MD02G1103000.v1.1

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
8255049 .. 8256492
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1103000.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGGCAACAAAATATGCAACGGAAACAAAAGGGGCACCAGCAACAAATTCGGTAAGCACCTTTCCAAAGTGGTAAAAAATGTATGCGACTTCTGTCTTCAGTCAATTCATCTCGAAAACTCATTCAACATCAAAGGGTGCACTCATTCTTACTGTCAACAGTGCATTGTTAAATTCATAGTGTCCAACCTCCAATTAAATGTCACTTCCATTACCTGCCCTGTACCGGGCTGTGCCGGTGTCTTAGACCCAGAGCACTGCCGCCAAATCCTCCCATCCGACGTCTTTGTTTCATGGAGCAATGCCTTATCTGAGTCTGTACTTTCCCCTGAGAGCGATATTGACTCAACCTTCATATGTGATTTCTGTGTTGAGCCAGTTAACCTGAAAGACTCATTTAACATAAGGGGTTGCACCCATTTTTACTGTCAAGGTTGCATTGTCAAATTCATAGCTTCCAAGCGCCAAGACAATGTCACTCGCATTATGTGCCCTGTACCAGGCTGCACCGGCACGTTAGACCTAGAATACTGTCGTGCAATTCTCCCGAAAGATGTTTGTGATCGGTGGGGAAAGGCCTTATGTGAATCTGTGGTTATGGCCCTTATGGGGACTGGGAAGAAGTACTTATACTGTCCCTTCAATGCGTGCTCGGCGCTGTTGATTCATGAGGATCCGGAGGGTACCACTCAGTCTGTGTGTCCTCATTGCAAAAGAGAATTTTGCGCCAAGTGTAAGGTTCCTTGGCATACCGAATTTGATTGTGCCAATTTTCAGAAACTGGAAAAGAGGGGTGAAGACAAGATGCTGGAAGAGCTTGCCAAGAGGAAGAGGTGGAGGAGGTGTCCAAATTGCAAGTACTATGTTGAAAGAAAATCTGGGTGCAGCTACATGAAATGCAGGTGTCAATATATATTTTGTTACAAATGTGGAGCAAAAAGATCAGATGCTTTTCACCACTGTTCTAAAAATCCCCGCCTAGCGCCGCCTAGGCCCCCCCTTGCGCCGCCTAGGCCTCGCCTAGCACAACCTAGGCGCTAG

Protein Analysis

347

Amino Acids

39.22

Weight (kDa)

8.94

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 204 - 255 2.5e-10 IBR domain, a half RING-finger domain
IBR PF01485 266 - 314 9.4e-08 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 891
AatII GACGTC 1 cut(s) 285
Acc36I ACCTGC 2 cut(s) 224, 891
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 2 cut(s) 35, 683
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 4 cut(s) 262, 976, 986, 1007
AclWI GGATC 2 cut(s) 668, 681
AcsI RAATTY 5 cut(s) 47, 173, 446, 719, 755
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 6 cut(s) 225, 321, 498, 626, 685, 860
AfiI CCNNNNNNNGG 4 cut(s) 226, 227, 500, 609
AgsI TTSAA 3 cut(s) 127, 643, 869
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 3 cut(s) 455, 817, 888
AluI AGCT 3 cut(s) 455, 817, 888
Alw21I GWGCWC 3 cut(s) 143, 258, 653
Alw44I GTGCAC 1 cut(s) 139
AlwI GGATC 2 cut(s) 668, 681
AlwNI CAGNNNCTG 1 cut(s) 781
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 4 cut(s) 576, 600, 992, 1013
ApaLI GTGCAC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 504, 885
ApoI RAATTY 5 cut(s) 47, 173, 446, 719, 755
Asp718I GGTACC 1 cut(s) 683
AspA2I CCTAGG 3 cut(s) 989, 1010, 1031
AspLEI GCGC 6 cut(s) 465, 658, 728, 985, 1006, 1038
AspS9I GGNCC 2 cut(s) 601, 993
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 806, 947
AvrII CCTAGG 3 cut(s) 989, 1010, 1031
BaeGI GKGCMC 3 cut(s) 38, 143, 494
BamHI GGATCC 1 cut(s) 673
BanI GGYRCC 2 cut(s) 35, 683
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
BbsI GAAGAC 2 cut(s) 89, 804
Bbv12I GWGCWC 3 cut(s) 143, 258, 653
BbvI GCAGC 2 cut(s) 491, 897
BccI CCATC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 501
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 7 cut(s) 524, 980, 990, 1011, 1022, 1032, 1039
BfoI RGCGCY 4 cut(s) 466, 659, 986, 1039
BfuAI ACCTGC 2 cut(s) 224, 891
BglI GCCNNNNNGGC 2 cut(s) 991, 1012
BisI GCNGC 5 cut(s) 262, 505, 886, 986, 1007
BlnI CCTAGG 3 cut(s) 989, 1010, 1031
BlsI GCNGC 5 cut(s) 263, 506, 887, 987, 1008
BmcAI AGTACT 2 cut(s) 626, 860
Bme1390I CCNGG 2 cut(s) 228, 501
BmgT120I GGNCC 2 cut(s) 601, 993
BmiI GGNNCC 5 cut(s) 37, 675, 685, 741, 995
BmrFI CCNGG 2 cut(s) 228, 501
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 795, 937
BmuI ACTGGG 1 cut(s) 624
BoxI GACNNNNGTC 1 cut(s) 93
BpiI GAAGAC 2 cut(s) 89, 804
BpuMI CCSGG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 4 cut(s) 743, 989, 1010, 1031
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 227, 500, 609
Bse118I RCCGGY 2 cut(s) 236, 509
Bse1I ACTGG 3 cut(s) 377, 619, 786
Bse3DI GCAATG 2 cut(s) 307, 706
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 4 cut(s) 743, 989, 1010, 1031
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 4 cut(s) 226, 227, 500, 609
BseMI GCAATG 2 cut(s) 307, 706
BseMII CTCAG 3 cut(s) 303, 321, 704
BseNI ACTGG 3 cut(s) 377, 619, 786
BseRI GAGGAG 1 cut(s) 853
BseSI GKGCMC 3 cut(s) 38, 143, 494
BseXI GCAGC 2 cut(s) 491, 897
BsgI GTGCAG 2 cut(s) 490, 904
BshFI GGCC 4 cut(s) 578, 602, 994, 1015
BshNI GGYRCC 2 cut(s) 35, 683
BsiHKAI GWGCWC 3 cut(s) 143, 258, 653
BsiSI CCGG 4 cut(s) 227, 237, 510, 677
BslFI GGGAC 2 cut(s) 621, 625
BslI CCNNNNNNNGG 4 cut(s) 226, 227, 500, 609
BsmFI GGGAC 2 cut(s) 621, 625
BsnI GGCC 4 cut(s) 578, 602, 994, 1015
Bsp1286I GDGCHC 5 cut(s) 38, 143, 258, 494, 653
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 3 cut(s) 562, 673, 941
BspACI CCGC 4 cut(s) 262, 976, 986, 1007
BspANI GGCC 4 cut(s) 578, 602, 994, 1015
BspCNI CTCAG 3 cut(s) 304, 322, 703
BspEI TCCGGA 1 cut(s) 676
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 5 cut(s) 37, 675, 685, 741, 995
BspMI ACCTGC 2 cut(s) 224, 891
BspPI GGATC 2 cut(s) 668, 681
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 2 cut(s) 35, 683
BsrDI GCAATG 2 cut(s) 307, 706
BsrFI RCCGGY 2 cut(s) 236, 509
BsrI ACTGG 3 cut(s) 377, 619, 786
BssAI RCCGGY 2 cut(s) 236, 509
BssECI CCNNGG 4 cut(s) 743, 989, 1010, 1031
BssMI GATC 3 cut(s) 562, 673, 941
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 4 cut(s) 743, 989, 1010, 1031
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 6 cut(s) 155, 162, 428, 533, 635, 962
Bst6I CTCTTC 2 cut(s) 807, 824
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 649, 819
BstDEI CTNAG 4 cut(s) 244, 312, 330, 690
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 275
BstH2I RGCGCY 4 cut(s) 466, 659, 986, 1039
BstHHI GCGC 6 cut(s) 465, 658, 728, 985, 1006, 1038
BstKTI GATC 3 cut(s) 565, 676, 944
BstMBI GATC 3 cut(s) 562, 673, 941
BstMWI GCNNNNNNNGC 6 cut(s) 489, 510, 653, 814, 991, 1012
BstNI CCWGG 1 cut(s) 501
BstPAI GACNNNNGTC 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 226, 499
BstSLI GKGCMC 3 cut(s) 38, 143, 494
BstV1I GCAGC 2 cut(s) 491, 897
BstV2I GAAGAC 2 cut(s) 89, 804
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 4 cut(s) 578, 602, 994, 1015
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 167, 256, 958
BveI ACCTGC 2 cut(s) 224, 891
Cac8I GCNNGC 2 cut(s) 649, 819
CaiI CAGNNNCTG 1 cut(s) 781
CciI TCATGA 1 cut(s) 667
CfoI GCGC 6 cut(s) 465, 658, 728, 985, 1006, 1038
Cfr10I RCCGGY 2 cut(s) 236, 509
Cfr13I GGNCC 2 cut(s) 601, 993
Csp6I GTAC 6 cut(s) 224, 320, 497, 625, 684, 859
CviAII CATG 3 cut(s) 294, 668, 892
CviQI GTAC 6 cut(s) 224, 320, 497, 625, 684, 859
DdeI CTNAG 4 cut(s) 244, 312, 330, 690
DpnI GATC 3 cut(s) 564, 675, 943
DpnII GATC 3 cut(s) 562, 673, 941
Eam1104I CTCTTC 2 cut(s) 807, 824
EarI CTCTTC 2 cut(s) 807, 824
Eco130I CCWWGG 4 cut(s) 743, 989, 1010, 1031
Eco147I AGGCCT 2 cut(s) 578, 1015
Eco57I CTGAAG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 993
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 4 cut(s) 743, 989, 1010, 1031
ErhI CCWWGG 4 cut(s) 743, 989, 1010, 1031
FaeI CATG 3 cut(s) 297, 671, 895
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 2 cut(s) 621, 625
FatI CATG 3 cut(s) 293, 667, 891
FauI CCCGC 1 cut(s) 983
FauNDI CATATG 1 cut(s) 356
Fnu4HI GCNGC 5 cut(s) 262, 505, 886, 986, 1007
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 5 cut(s) 262, 505, 886, 986, 1007
FspBI CTAG 7 cut(s) 524, 980, 990, 1011, 1022, 1032, 1039
GlaI GCGC 6 cut(s) 464, 657, 727, 984, 1005, 1037
GluI GCNGC 5 cut(s) 262, 505, 886, 986, 1007
HaeII RGCGCY 4 cut(s) 466, 659, 986, 1039
HaeIII GGCC 4 cut(s) 578, 602, 994, 1015
HapII CCGG 4 cut(s) 227, 237, 510, 677
HhaI GCGC 6 cut(s) 465, 658, 728, 985, 1006, 1038
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 297, 671, 895
Hin6I GCGC 6 cut(s) 463, 656, 726, 983, 1004, 1036
HinP1I GCGC 6 cut(s) 463, 656, 726, 983, 1004, 1036
HincII GTYRAC 2 cut(s) 158, 382
HindII GTYRAC 2 cut(s) 158, 382
HinfI GANTC 5 cut(s) 314, 344, 392, 587, 664
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 4 cut(s) 227, 237, 510, 677
HphI GGTGA 2 cut(s) 806, 947
Hpy166II GTNNAC 3 cut(s) 141, 158, 382
Hpy188I TCNGA 4 cut(s) 280, 313, 777, 946
Hpy188III TCNNGA 4 cut(s) 113, 547, 668, 677
Hpy8I GTNNAC 3 cut(s) 141, 158, 382
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 361, 649
HpyCH4III ACNGT 6 cut(s) 155, 162, 428, 533, 635, 962
HpyCH4IV ACGT 2 cut(s) 282, 515
HpyF10VI GCNNNNNNNGC 6 cut(s) 489, 510, 653, 814, 991, 1012
HpyF3I CTNAG 4 cut(s) 244, 312, 330, 690
HpySE526I ACGT 2 cut(s) 282, 515
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 297, 671, 895
HspAI GCGC 6 cut(s) 463, 656, 726, 983, 1004, 1036
Kpn2I TCCGGA 1 cut(s) 676
KpnI GGTACC 1 cut(s) 687
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 562, 673, 941
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 2 cut(s) 297, 932
Lsp1109I GCAGC 2 cut(s) 491, 897
LweI GCATC 2 cut(s) 795, 937
MaeI CTAG 7 cut(s) 524, 980, 990, 1011, 1022, 1032, 1039
MaeII ACGT 2 cut(s) 282, 515
MaeIII GTNAC 3 cut(s) 202, 475, 920
MalI GATC 3 cut(s) 564, 675, 943
MboI GATC 3 cut(s) 562, 673, 941
MboII GAAGA 5 cut(s) 89, 631, 809, 824, 841
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 5 cut(s) 38, 143, 258, 494, 653
MlyI GAGTC 3 cut(s) 323, 338, 386
MmeI TCCRAC 2 cut(s) 210, 303
MroI TCCGGA 1 cut(s) 676
MseI TTAA 4 cut(s) 171, 197, 381, 399
MspI CCGG 4 cut(s) 227, 237, 510, 677
MspR9I CCNGG 2 cut(s) 228, 501
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 6 cut(s) 489, 510, 653, 814, 991, 1012
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 356
NdeII GATC 3 cut(s) 562, 673, 941
NlaIII CATG 3 cut(s) 297, 671, 895
NlaIV GGNNCC 5 cut(s) 37, 675, 685, 741, 995
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 2 cut(s) 202, 475
PagI TCATGA 1 cut(s) 667
PaqCI CACCTGC 1 cut(s) 891
PceI AGGCCT 2 cut(s) 578, 1015
PciSI GCTCTTC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 587, 664
PflFI GACNNNGTC 1 cut(s) 473
PkrI GCNGC 5 cut(s) 263, 506, 887, 987, 1008
PleI GAGTC 3 cut(s) 322, 338, 386
PpsI GAGTC 3 cut(s) 322, 338, 386
PshAI GACNNNNGTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 5 cut(s) 37, 675, 685, 741, 995
PspPI GGNCC 2 cut(s) 601, 993
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 673
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 6 cut(s) 225, 321, 498, 626, 685, 860
RsaNI GTAC 6 cut(s) 224, 320, 497, 625, 684, 859
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 4 cut(s) 171, 197, 381, 399
SatI GCNGC 5 cut(s) 262, 505, 886, 986, 1007
Sau3AI GATC 3 cut(s) 562, 673, 941
Sau96I GGNCC 2 cut(s) 601, 993
ScaI AGTACT 2 cut(s) 626, 860
SchI GAGTC 3 cut(s) 323, 338, 386
ScrFI CCNGG 2 cut(s) 228, 501
SduI GDGCHC 5 cut(s) 38, 143, 258, 494, 653
SfaNI GCATC 2 cut(s) 795, 937
SseBI AGGCCT 2 cut(s) 578, 1015
SsiI CCGC 4 cut(s) 262, 976, 986, 1007
SspMI CTAG 7 cut(s) 524, 980, 990, 1011, 1022, 1032, 1039
StuI AGGCCT 2 cut(s) 578, 1015
StyD4I CCNGG 2 cut(s) 226, 499
StyI CCWWGG 4 cut(s) 743, 989, 1010, 1031
TaaI ACNGT 6 cut(s) 155, 162, 428, 533, 635, 962
TaiI ACGT 2 cut(s) 285, 518
TaqI TCGA 1 cut(s) 114
TatI WGTACW 3 cut(s) 319, 624, 858
TauI GCSGC 3 cut(s) 264, 988, 1009
TfiI GAWTC 2 cut(s) 587, 664
Tru1I TTAA 4 cut(s) 171, 197, 381, 399
Tru9I TTAA 4 cut(s) 171, 197, 381, 399
TscAI CASTG 3 cut(s) 167, 263, 965
TseFI GTSAC 2 cut(s) 202, 475
TseI GCWGC 2 cut(s) 504, 885
Tsp45I GTSAC 2 cut(s) 202, 475
TspDTI ATGAA 7 cut(s) 98, 166, 282, 343, 439, 656, 908
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 167, 263, 965
Tth111I GACNNNGTC 1 cut(s) 473
VneI GTGCAC 1 cut(s) 139
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 5 cut(s) 47, 173, 446, 719, 755
XmaJI CCTAGG 3 cut(s) 989, 1010, 1031
XspI CTAG 7 cut(s) 524, 980, 990, 1011, 1022, 1032, 1039
ZraI GACGTC 1 cut(s) 283
ZrmI AGTACT 2 cut(s) 626, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.