Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8628129 .. 8629484

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATGAAGAACTATCACCAGATGAAAAAGGGTGCAGAACGACTCAAGGTAATCGGTGCCGTACTGCGTAGCCTCAATTCCATCTTACGTAAACTCTCACTAAGCCGGAAAATAACCAAGTCTCCGTCGCCGTCGTTGGAGAACCAACCCCATCATCATCATCACACCGTTGATCACGATCACGATCACGATCACATGAACCCCCTAATCTTCTCCAATGGACAATCTTCCACTAGTACTAGTTTTGATATTCCTAGTAGTACTTTCATATGCGGTTTGTGTCTTAAGCCTATTCAACTCGAAGACTCATTCGACTTCAAGGGCTGTCCCCACTTTTATTGTACTCCATGCATTGTGAACTTTGTAGTCTCCAAGCTCCAAGACAATGCCGATTGGGCTCTGCAATGCCCTATGACAACCTGTACCGGAACACTAGACCCTGACTACTGCCGGCCAATCCTTCCGAGACAGGTTTTTGATTCGTGGATGAATGCATTGTGTTATCAGATTGAGCAATCTTCTTATGGTGCCGAAAGCAGTAATAGTGGTACTACTTTTACATGTGATTTTTGTGTTGAGGAAAAGCATCTGAGTGACTCGTTTAGTGTCAAAGATTGCAGCCATTTTTACTGCCACCAATGCATCGTCAATTTTGTGGTGTCAAAGCTGGAGGACAATGTGACCTCCATTGTGTGCCCCGAGCCAGGCTGCAGAGGAGTGCTAGACCTGCAGTACTGTCAGCCAATTCTCCCGAAAGATGTTCTTGATTGGTGGGGGAAGGCCTTGTGTGAAAATGTTATTTTGGGGTCGGAGAACAATGACAAGTATTTCTACTGTCCCTTCAAGGATTGCTCGGCACTGCTGGTTGTTGATGATCCGGAGGATGAGCATGACATATACAAGTCTCGGTGTCCTCATTGCAAAAGAGAGGTATGCTTGAATTGCAAGGTTCCTTGGCATACGGAGTTCAACTGCGACAAGTTTCAGAAATTGAGAGACAAGGGTGAAGATGAGATGGTGAAGGAGCTTGCCAAGAAAAAGAAGTGGAGCAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAAGAGGGGTGCACTTACATTAAATGCAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

372

Amino Acids

42.72

Weight (kDa)

6.48

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	271 - 325	1.3e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	735, 1101
AccB1I	GGYRCC	2 cut(s)	56, 527
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	452
AfaI	GTAC	7 cut(s)	63, 238, 262, 343, 424, 550, 734
AfiI	CCNNNNNNNGG	1 cut(s)	704
AflII	CTTAAG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	5 cut(s)	296, 319, 844, 940, 970
AhlI	ACTAGT	2 cut(s)	233, 239
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	3 cut(s)	376, 667, 1027
AluI	AGCT	3 cut(s)	376, 667, 1027
Alw21I	GWGCWC	1 cut(s)	1097
Alw26I	GTCTC	5 cut(s)	126, 373, 460, 909, 990
Alw44I	GTGCAC	1 cut(s)	1093
AlwI	GGATC	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	2 cut(s)	452, 780
ApaLI	GTGCAC	1 cut(s)	1093
ApeKI	GCWGC	2 cut(s)	618, 708
AsuHPI	GGTGA	3 cut(s)	8, 1016, 1030
AvaI	CYCGRG	1 cut(s)	698
BaeGI	GKGCMC	3 cut(s)	698, 1058, 1097
BanI	GGYRCC	2 cut(s)	56, 527
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	1097
BbvI	GCAGC	2 cut(s)	630, 695
BccI	CCATC	3 cut(s)	89, 159, 1009
BceAI	ACGGC	2 cut(s)	44, 115
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	5 cut(s)	126, 373, 460, 909, 990
BcuI	ACTAGT	2 cut(s)	233, 239
BfaI	CTAG	5 cut(s)	234, 240, 255, 434, 722
BfmI	CTRYAG	2 cut(s)	709, 728
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	2 cut(s)	735, 1101
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	619, 709
BlsI	GCNGC	2 cut(s)	620, 710
BmcAI	AGTACT	3 cut(s)	238, 262, 734
Bme1390I	CCNGG	1 cut(s)	705
BmeT110I	CYCGRG	1 cut(s)	698
BmiI	GGNNCC	3 cut(s)	58, 529, 951
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	595, 651
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	3 cut(s)	177, 183, 189
BsaJI	CCNNGG	1 cut(s)	953
BsaWI	WCCGGW	2 cut(s)	425, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse118I	RCCGGY	1 cut(s)	450
Bse3DI	GCAATG	2 cut(s)	410, 916
Bse8I	GATNNNNATC	3 cut(s)	177, 183, 189
BseAI	TCCGGA	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	953
BseGI	GGATG	2 cut(s)	492, 889
BseJI	GATNNNNATC	3 cut(s)	177, 183, 189
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	2 cut(s)	410, 916
BseMII	CTCAG	1 cut(s)	581
BseRI	GAGGAG	1 cut(s)	729
BseSI	GKGCMC	3 cut(s)	698, 1058, 1097
BseXI	GCAGC	2 cut(s)	630, 695
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	454, 782
BshNI	GGYRCC	2 cut(s)	56, 527
BsiHKAI	GWGCWC	1 cut(s)	1097
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	4 cut(s)	106, 426, 451, 878
BslFI	GGGAC	2 cut(s)	312, 822
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	5 cut(s)	126, 373, 460, 909, 990
BsmFI	GGGAC	2 cut(s)	312, 822
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	454, 782
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	4 cut(s)	400, 698, 1058, 1097
Bsp13I	TCCGGA	1 cut(s)	877
Bsp143I	GATC	5 cut(s)	172, 178, 184, 190, 874
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	454, 782
BspCNI	CTCAG	1 cut(s)	582
BspEI	TCCGGA	1 cut(s)	877
BspLI	GGNNCC	3 cut(s)	58, 529, 951
BspMAI	CTGCAG	2 cut(s)	713, 732
BspMI	ACCTGC	2 cut(s)	735, 1101
BspPI	GGATC	1 cut(s)	869
BspT107I	GGYRCC	2 cut(s)	56, 527
BspTI	CTTAAG	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	410, 916
BsrFI	RCCGGY	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	953
BssMI	GATC	5 cut(s)	172, 178, 184, 190, 874
BssT1I	CCWWGG	1 cut(s)	953
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	3 cut(s)	169, 737, 836
BstAFI	CTTAAG	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	452, 1029
BstDEI	CTNAG	2 cut(s)	101, 590
BstF5I	GGATG	2 cut(s)	492, 889
BstKTI	GATC	5 cut(s)	175, 181, 187, 193, 877
BstMAI	GTCTC	5 cut(s)	126, 373, 460, 909, 990
BstMBI	GATC	5 cut(s)	172, 178, 184, 190, 874
BstMWI	GCNNNNNNNGC	5 cut(s)	395, 639, 727, 942, 1062
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	2 cut(s)	709, 728
BstSLI	GKGCMC	3 cut(s)	698, 1058, 1097
BstSNI	TACGTA	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	630, 695
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	454, 782
BtsCI	GGATG	2 cut(s)	492, 889
BtsI	GCAGTG	1 cut(s)	857
BtsIMutI	CAGTG	1 cut(s)	857
BveI	ACCTGC	2 cut(s)	735, 1101
Cac8I	GCNNGC	2 cut(s)	452, 1029
Cfr10I	RCCGGY	1 cut(s)	450
Csp6I	GTAC	7 cut(s)	62, 237, 261, 342, 423, 549, 733
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	4 cut(s)	196, 348, 561, 890
CviQI	GTAC	7 cut(s)	62, 237, 261, 342, 423, 549, 733
DdeI	CTNAG	2 cut(s)	101, 590
DpnI	GATC	5 cut(s)	174, 180, 186, 192, 876
DpnII	GATC	5 cut(s)	172, 178, 184, 190, 874
EaeI	YGGCCR	1 cut(s)	452
Eco105I	TACGTA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	953
Eco147I	AGGCCT	1 cut(s)	782
Eco24I	GRGCYC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	953
EcoT22I	ATGCAT	3 cut(s)	353, 496, 644
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	953
FaeI	CATG	4 cut(s)	199, 351, 564, 893
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	312, 822
FatI	CATG	4 cut(s)	195, 347, 560, 889
FauNDI	CATATG	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	619, 709
FokI	GGATG	2 cut(s)	499, 896
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	619, 709
FspBI	CTAG	5 cut(s)	234, 240, 255, 434, 722
GluI	GCNGC	2 cut(s)	619, 709
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	2 cut(s)	454, 782
HapII	CCGG	4 cut(s)	106, 426, 451, 878
Hin1II	CATG	4 cut(s)	199, 351, 564, 893
HinfI	GANTC	4 cut(s)	42, 305, 479, 596
HpaII	CCGG	4 cut(s)	106, 426, 451, 878
HphI	GGTGA	3 cut(s)	8, 1016, 1030
Hpy166II	GTNNAC	3 cut(s)	92, 358, 1095
Hpy188I	TCNGA	5 cut(s)	465, 507, 591, 811, 987
Hpy188III	TCNNGA	6 cut(s)	176, 182, 188, 751, 764, 878
Hpy8I	GTNNAC	3 cut(s)	92, 358, 1095
Hpy99I	CGWCG	2 cut(s)	130, 136
HpyAV	CCTTC	4 cut(s)	470, 772, 850, 1015
HpyCH4III	ACNGT	3 cut(s)	169, 737, 836
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	5 cut(s)	395, 639, 727, 942, 1062
HpyF3I	CTNAG	2 cut(s)	101, 590
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	4 cut(s)	199, 351, 564, 893
Kpn2I	TCCGGA	1 cut(s)	877
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	172, 178, 184, 190, 874
LmnI	GCTCC	3 cut(s)	381, 1024, 1047
Lsp1109I	GCAGC	2 cut(s)	630, 695
LweI	GCATC	2 cut(s)	595, 651
MaeI	CTAG	5 cut(s)	234, 240, 255, 434, 722
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	593, 679
MalI	GATC	5 cut(s)	174, 180, 186, 192, 876
MboI	GATC	5 cut(s)	172, 178, 184, 190, 874
MboII	GAAGA	6 cut(s)	19, 202, 219, 314, 510, 1019
MhlI	GDGCHC	4 cut(s)	400, 698, 1058, 1097
MluCI	AATT	5 cut(s)	76, 649, 744, 940, 989
MlyI	GAGTC	3 cut(s)	36, 299, 590
MmeI	TCCRAC	2 cut(s)	117, 789
MnlI	CCTC	9 cut(s)	83, 571, 664, 694, 707, 874, 922, 924, 1081
Mph1103I	ATGCAT	3 cut(s)	353, 496, 644
MroI	TCCGGA	1 cut(s)	877
MroNI	GCCGGC	1 cut(s)	450
MseI	TTAA	2 cut(s)	285, 1104
MslI	CAYNNNNRTG	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	4 cut(s)	106, 426, 451, 878
MspR9I	CCNGG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	5 cut(s)	395, 639, 727, 942, 1062
NaeI	GCCGGC	1 cut(s)	452
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	5 cut(s)	172, 178, 184, 190, 874
NgoMIV	GCCGGC	1 cut(s)	450
NlaIII	CATG	4 cut(s)	199, 351, 564, 893
NlaIV	GGNNCC	3 cut(s)	58, 529, 951
NmeAIII	GCCGAG	1 cut(s)	833
NmuCI	GTSAC	2 cut(s)	593, 679
NsiI	ATGCAT	3 cut(s)	353, 496, 644
NspI	RCATGY	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	782
PciI	ACATGT	1 cut(s)	560
PctI	GAATGC	1 cut(s)	496
PdiI	GCCGGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	620, 710
PleI	GAGTC	3 cut(s)	36, 299, 590
PpsI	GAGTC	3 cut(s)	36, 299, 590
Ppu21I	YACGTR	1 cut(s)	89
PscI	ACATGT	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	58, 529, 951
PstI	CTGCAG	2 cut(s)	713, 732
RsaI	GTAC	7 cut(s)	63, 238, 262, 343, 424, 550, 734
RsaNI	GTAC	7 cut(s)	62, 237, 261, 342, 423, 549, 733
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	285, 1104
SatI	GCNGC	2 cut(s)	619, 709
Sau3AI	GATC	5 cut(s)	172, 178, 184, 190, 874
ScaI	AGTACT	3 cut(s)	238, 262, 734
SchI	GAGTC	3 cut(s)	36, 299, 590
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	4 cut(s)	400, 698, 1058, 1097
SfaNI	GCATC	2 cut(s)	595, 651
SfcI	CTRYAG	2 cut(s)	709, 728
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	44, 284
SmoI	CTYRAG	2 cut(s)	44, 284
SnaBI	TACGTA	1 cut(s)	89
SpeI	ACTAGT	2 cut(s)	233, 239
Sse9I	AATT	5 cut(s)	76, 649, 744, 940, 989
SseBI	AGGCCT	1 cut(s)	782
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	5 cut(s)	234, 240, 255, 434, 722
StuI	AGGCCT	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	1 cut(s)	953
TaaI	ACNGT	3 cut(s)	169, 737, 836
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	300, 312
TasI	AATT	5 cut(s)	76, 649, 744, 940, 989
TatI	WGTACW	4 cut(s)	236, 260, 341, 732
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	285, 1104
Tru9I	TTAA	2 cut(s)	285, 1104
TscAI	CASTG	1 cut(s)	864
TseFI	GTSAC	2 cut(s)	593, 679
TseI	GCWGC	2 cut(s)	618, 708
Tsp45I	GTSAC	2 cut(s)	593, 679
TspDTI	ATGAA	5 cut(s)	20, 38, 212, 256, 503
TspGWI	ACGGA	2 cut(s)	114, 977
TspRI	CASTG	1 cut(s)	864
Vha464I	CTTAAG	1 cut(s)	284
VneI	GTGCAC	1 cut(s)	1093
XceI	RCATGY	1 cut(s)	564
XspI	CTAG	5 cut(s)	234, 240, 255, 434, 722
ZrmI	AGTACT	3 cut(s)	238, 262, 734
Zsp2I	ATGCAT	3 cut(s)	353, 496, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.