Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

8784893 .. 8786956

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGCAATCCCTTCAAAAAGCTACCACTTTCCCAATTTTCTAGCTTCAAGCAAGCAGAATCTAAGCTTCAACAGTTCAACACTGTCCAATTTCTCCCCGTTAACTCGGTAGTGTCTAAAAGAGGAACCAATCAAGAGGACAATGTCACCACCATTGGGTGCCCTGTTCCTGACTGCAGGGGATCCCTGGAGCCAGAGCACTGTCTTTCGATTCTCCCACCGGAGTTGTTTCTCCTGTGGGGGAAGGCCTTGTGTGAGACTGTGTTTGCGGATTCGGATGAATATTGCAGGATCTTCTACTGTCCATTTAAGGATTGCTCGGCAATGTTGATTGAGGATGGGGTTGAAGAGGTTGATCTTGTGAGGGAATCGGACTGCCCACACTGCTGGAGGTTGTTCTGTGCTCGGTGTAGGGTTCCGTGGCACACGGATATCGATTGTGAGGAGTTTCAGGAGCTGAATAAGGATGAGAGGAGGAAAGAAGACTTCATGTTGATACAGCTTGCCAAGGATAAAAAGTGGAGAAGATGCCCCAAGTGTAGGTTCTATGTCGAACGATCGGAGGGTTGCAAGTTCATGAAGTGTAGGTGCAGAACAGCATTCTGCTACAGATGTGGGAGAATTTTAAGCAAGAATCATGGCCACTTTTGTCCCAGCTGTGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

222

Amino Acids

25.96

Weight (kDa)

7.36

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	98 - 147	1.1e-07	IBR domain, a half RING-finger domain
IBR	PF01485	161 - 208	4.6e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	159
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	3 cut(s)	177, 190, 299
AcoI	YGGCCR	1 cut(s)	640
AcsI	RAATTY	1 cut(s)	621
AfiI	CCNNNNNNNGG	2 cut(s)	156, 540
AgsI	TTSAA	5 cut(s)	16, 49, 71, 79, 347
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	6 cut(s)	22, 45, 67, 457, 502, 657
AluI	AGCT	6 cut(s)	22, 45, 67, 457, 502, 657
Alw21I	GWGCWC	2 cut(s)	201, 406
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	177, 190, 299
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	2 cut(s)	246, 640
ApoI	RAATTY	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	642
BamHI	GGATCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	2 cut(s)	201, 406
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	175, 607
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	5 cut(s)	127, 161, 184, 192, 417
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	2 cut(s)	209, 409
Bsa29I	ATCGAT	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	186, 419, 507
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 540
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	186, 419, 507
BseGI	GGATG	3 cut(s)	283, 343, 472
BseLI	CCNNNNNNNGG	2 cut(s)	156, 540
BseMI	GCAATG	1 cut(s)	330
BseRI	GAGGAG	2 cut(s)	458, 487
BseSI	GKGCMC	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	560
BshFI	GGCC	2 cut(s)	248, 642
BshNI	GGYRCC	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	560
BsiHKAI	GWGCWC	2 cut(s)	201, 406
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	156, 540
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	248, 642
Bsp1286I	GDGCHC	3 cut(s)	164, 201, 406
Bsp143I	GATC	4 cut(s)	182, 291, 355, 557
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	2 cut(s)	248, 642
BspDI	ATCGAT	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	5 cut(s)	127, 161, 184, 192, 417
BspMAI	CTGCAG	1 cut(s)	179
BspPI	GGATC	3 cut(s)	177, 190, 299
BspT107I	GGYRCC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	186, 419, 507
BssMI	GATC	4 cut(s)	182, 291, 355, 557
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	5 cut(s)	75, 85, 203, 262, 302
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	54, 504
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	283, 343, 472
BstKTI	GATC	4 cut(s)	185, 294, 358, 560
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	182, 291, 355, 557
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	175, 607
BstSLI	GKGCMC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	2 cut(s)	182, 291
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	2 cut(s)	182, 291
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	248, 642
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	283, 343, 472
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	81, 199, 382
Cac8I	GCNNGC	2 cut(s)	54, 504
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	576
ClaI	ATCGAT	1 cut(s)	435
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	3 cut(s)	490, 577, 638
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	4 cut(s)	184, 293, 357, 559
DpnII	GATC	4 cut(s)	182, 291, 355, 557
EaeI	YGGCCR	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	3 cut(s)	493, 580, 641
FaiI	YATR	4 cut(s)	491, 549, 578, 639
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	3 cut(s)	489, 576, 637
FokI	GGATG	3 cut(s)	290, 350, 479
FspBI	CTAG	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	657
GsuI	CTGGAG	2 cut(s)	209, 409
HaeIII	GGCC	2 cut(s)	248, 642
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	3 cut(s)	493, 580, 641
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	5 cut(s)	59, 211, 272, 368, 634
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	277, 373, 562
Hpy188III	TCNNGA	4 cut(s)	134, 170, 452, 577
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	22, 238
HpyCH4III	ACNGT	5 cut(s)	75, 85, 203, 262, 302
HpyCH4V	TGCA	5 cut(s)	6, 177, 288, 570, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	493, 580, 641
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	182, 291, 355, 557
LmnI	GCTCC	2 cut(s)	190, 454
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	184, 293, 357, 559
MboI	GATC	4 cut(s)	182, 291, 355, 557
MboII	GAAGA	4 cut(s)	286, 359, 494, 537
MflI	RGATCY	2 cut(s)	182, 291
MhlI	GDGCHC	3 cut(s)	164, 201, 406
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	3 cut(s)	35, 89, 621
MluNI	TGGCCA	1 cut(s)	642
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	3 cut(s)	102, 309, 626
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	4 cut(s)	182, 291, 355, 557
NlaIII	CATG	3 cut(s)	493, 580, 641
NlaIV	GGNNCC	5 cut(s)	127, 161, 184, 192, 417
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	576
PceI	AGGCCT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	5 cut(s)	59, 211, 272, 368, 634
PflFI	GACNNNGTC	1 cut(s)	143
Ple19I	CGATCG	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	5 cut(s)	127, 161, 184, 192, 417
PstI	CTGCAG	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	182, 291
PsyI	GACNNNGTC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	102, 309, 626
Sau3AI	GATC	4 cut(s)	182, 291, 355, 557
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	164, 201, 406
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	2 cut(s)	175, 607
Sse9I	AATT	3 cut(s)	35, 89, 621
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	5 cut(s)	75, 85, 203, 262, 302
TaqI	TCGA	3 cut(s)	209, 435, 552
TasI	AATT	3 cut(s)	35, 89, 621
TfiI	GAWTC	5 cut(s)	59, 211, 272, 368, 634
Tru1I	TTAA	3 cut(s)	102, 309, 626
Tru9I	TTAA	3 cut(s)	102, 309, 626
TscAI	CASTG	3 cut(s)	88, 206, 389
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	294, 478, 565, 593
TspGWI	ACGGA	2 cut(s)	408, 443
TspRI	CASTG	3 cut(s)	88, 206, 389
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	621
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.