Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8971884 .. 8972981

Gene Structure 1098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAAAAGGGTGCAGAACGACTCAAGGTAATCGGTGCCGTACTGCGTAGCCTCAATTCCATCTTACGTAAACTCTCACTAAGCCGGAAAATAACCAAGTCTCCGTCGCCGTCGTTGGAGAACCAACCCCATCATCATCATCACACCGTTGATCACGATCACGATCACGATCACATGAACCCCCTAATCTTCTCCAATGGACAATCTTCCACTAGTACTAGTTTTGATATTCCTAGTAGTACTTTCATATGCGGTTTGTGTCTTAAGCCTATTCAACTCGAAGACTCATTCGACTTCAAGGGCTGTCCCCACTTTTATTGTACTCCATGCATTGTGAACTTTGTAGTCTCCAAGCTCCAAGACAATGCCGATTGGGCTCTGCAATGCCCTATGACAACCTGTACCGGAACACTAGACCCTGACTACTGCCGGCCAATCCTTCCGAGACAGGTTTTTGATTCGTGGATGAATGCATTGTGTTATCAGATTGAGCAATCTTCTTATGGTGCCGAAAGCAGTAATAGTGGTACTACTTTTACATGTGATTTTTGTGTTGAGGAAAAGCATCTGAGTGACTCGTTTAGTGTCAAAGATTGCAGCCATTTTTACTGCCACCAATGCATCGTCAATTTTGTGGTGTCAAAGCTGGAGGACAATGTGACCTCCATTGTGTGCCCCGAGCCAGGCTGCAGAGGAGTGCTAGACCTGCAGTACTGTCAGCCAATTCTCCCGAAAGATGTTCTTGATTGGTGGGGGAAGGCCTTGTGTGAAAATGTTATTTTGGGGTCGGAGAACAATGACAAGTATTTCTACTGTCCCTTCAAGGATTGCTCGGCACTGCTGGTTGTTGATGATCCGGAGGATGAGCATGACATATACAAGTCTCGGTGTCCTCATTGCAAAAGAGAGGTATGCTTGAATTGCAAGGTTCCTTGGCATACGGAGTTCAACTGCGACAAGTTTCAGAAATTGAGAGACAAGGGTGAAGATGAGATGGTGAAGGAGCTTGCCAAGAAAAAGAAGTGGAGCAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAAGAGGGGTGCACTTACATTAAATGCAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

365

Amino Acids

41.79

Weight (kDa)

6.34

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	264 - 318	1.3e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	714, 1080
AccB1I	GGYRCC	2 cut(s)	35, 506
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	431
AfaI	GTAC	7 cut(s)	42, 217, 241, 322, 403, 529, 713
AfiI	CCNNNNNNNGG	1 cut(s)	683
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	5 cut(s)	275, 298, 823, 919, 949
AhlI	ACTAGT	2 cut(s)	212, 218
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	3 cut(s)	355, 646, 1006
AluI	AGCT	3 cut(s)	355, 646, 1006
Alw21I	GWGCWC	1 cut(s)	1076
Alw26I	GTCTC	5 cut(s)	105, 352, 439, 888, 969
Alw44I	GTGCAC	1 cut(s)	1072
AlwI	GGATC	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	677
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	2 cut(s)	431, 759
ApaLI	GTGCAC	1 cut(s)	1072
ApeKI	GCWGC	2 cut(s)	597, 687
AsuHPI	GGTGA	2 cut(s)	995, 1009
AvaI	CYCGRG	1 cut(s)	677
BaeGI	GKGCMC	3 cut(s)	677, 1037, 1076
BanI	GGYRCC	2 cut(s)	35, 506
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	1076
BbvI	GCAGC	2 cut(s)	609, 674
BccI	CCATC	3 cut(s)	68, 138, 988
BceAI	ACGGC	2 cut(s)	23, 94
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	5 cut(s)	105, 352, 439, 888, 969
BcuI	ACTAGT	2 cut(s)	212, 218
BfaI	CTAG	5 cut(s)	213, 219, 234, 413, 701
BfmI	CTRYAG	2 cut(s)	688, 707
BfrI	CTTAAG	1 cut(s)	263
BfuAI	ACCTGC	2 cut(s)	714, 1080
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	598, 688
BlsI	GCNGC	2 cut(s)	599, 689
BmcAI	AGTACT	3 cut(s)	217, 241, 713
Bme1390I	CCNGG	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	677
BmiI	GGNNCC	3 cut(s)	37, 508, 930
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	574, 630
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	68
BsaBI	GATNNNNATC	3 cut(s)	156, 162, 168
BsaJI	CCNNGG	1 cut(s)	932
BsaWI	WCCGGW	2 cut(s)	404, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	389, 895
Bse8I	GATNNNNATC	3 cut(s)	156, 162, 168
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	932
BseGI	GGATG	2 cut(s)	471, 868
BseJI	GATNNNNATC	3 cut(s)	156, 162, 168
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	2 cut(s)	389, 895
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	708
BseSI	GKGCMC	3 cut(s)	677, 1037, 1076
BseXI	GCAGC	2 cut(s)	609, 674
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	433, 761
BshNI	GGYRCC	2 cut(s)	35, 506
BsiHKAI	GWGCWC	1 cut(s)	1076
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	4 cut(s)	85, 405, 430, 857
BslFI	GGGAC	2 cut(s)	291, 801
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	5 cut(s)	105, 352, 439, 888, 969
BsmFI	GGGAC	2 cut(s)	291, 801
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	433, 761
BsoBI	CYCGRG	1 cut(s)	677
Bsp1286I	GDGCHC	4 cut(s)	379, 677, 1037, 1076
Bsp13I	TCCGGA	1 cut(s)	856
Bsp143I	GATC	5 cut(s)	151, 157, 163, 169, 853
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	433, 761
BspCNI	CTCAG	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	856
BspLI	GGNNCC	3 cut(s)	37, 508, 930
BspMAI	CTGCAG	2 cut(s)	692, 711
BspMI	ACCTGC	2 cut(s)	714, 1080
BspPI	GGATC	1 cut(s)	848
BspT107I	GGYRCC	2 cut(s)	35, 506
BspTI	CTTAAG	1 cut(s)	263
BsrDI	GCAATG	2 cut(s)	389, 895
BsrFI	RCCGGY	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	932
BssMI	GATC	5 cut(s)	151, 157, 163, 169, 853
BssT1I	CCWWGG	1 cut(s)	932
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	3 cut(s)	148, 716, 815
BstAFI	CTTAAG	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	431, 1008
BstDEI	CTNAG	2 cut(s)	80, 569
BstF5I	GGATG	2 cut(s)	471, 868
BstKTI	GATC	5 cut(s)	154, 160, 166, 172, 856
BstMAI	GTCTC	5 cut(s)	105, 352, 439, 888, 969
BstMBI	GATC	5 cut(s)	151, 157, 163, 169, 853
BstMWI	GCNNNNNNNGC	5 cut(s)	374, 618, 706, 921, 1041
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	2 cut(s)	688, 707
BstSLI	GKGCMC	3 cut(s)	677, 1037, 1076
BstSNI	TACGTA	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	609, 674
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	433, 761
BtsCI	GGATG	2 cut(s)	471, 868
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	1 cut(s)	836
BveI	ACCTGC	2 cut(s)	714, 1080
Cac8I	GCNNGC	2 cut(s)	431, 1008
Cfr10I	RCCGGY	1 cut(s)	429
Csp6I	GTAC	7 cut(s)	41, 216, 240, 321, 402, 528, 712
CspCI	CAANNNNNGTGG	2 cut(s)	299, 334
CviAII	CATG	4 cut(s)	175, 327, 540, 869
CviQI	GTAC	7 cut(s)	41, 216, 240, 321, 402, 528, 712
DdeI	CTNAG	2 cut(s)	80, 569
DpnI	GATC	5 cut(s)	153, 159, 165, 171, 855
DpnII	GATC	5 cut(s)	151, 157, 163, 169, 853
EaeI	YGGCCR	1 cut(s)	431
Eco105I	TACGTA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	932
Eco147I	AGGCCT	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	932
EcoT22I	ATGCAT	3 cut(s)	332, 475, 623
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	4 cut(s)	178, 330, 543, 872
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	2 cut(s)	291, 801
FatI	CATG	4 cut(s)	174, 326, 539, 868
FauNDI	CATATG	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	598, 688
FokI	GGATG	2 cut(s)	478, 875
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	2 cut(s)	598, 688
FspBI	CTAG	5 cut(s)	213, 219, 234, 413, 701
GluI	GCNGC	2 cut(s)	598, 688
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	2 cut(s)	433, 761
HapII	CCGG	4 cut(s)	85, 405, 430, 857
Hin1II	CATG	4 cut(s)	178, 330, 543, 872
HinfI	GANTC	4 cut(s)	21, 284, 458, 575
HpaII	CCGG	4 cut(s)	85, 405, 430, 857
HphI	GGTGA	2 cut(s)	995, 1009
Hpy166II	GTNNAC	3 cut(s)	71, 337, 1074
Hpy188I	TCNGA	5 cut(s)	444, 486, 570, 790, 966
Hpy188III	TCNNGA	6 cut(s)	155, 161, 167, 730, 743, 857
Hpy8I	GTNNAC	3 cut(s)	71, 337, 1074
Hpy99I	CGWCG	2 cut(s)	109, 115
HpyAV	CCTTC	4 cut(s)	449, 751, 829, 994
HpyCH4III	ACNGT	3 cut(s)	148, 716, 815
HpyCH4IV	ACGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	5 cut(s)	374, 618, 706, 921, 1041
HpyF3I	CTNAG	2 cut(s)	80, 569
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	178, 330, 543, 872
Kpn2I	TCCGGA	1 cut(s)	856
KroI	GCCGGC	1 cut(s)	429
KroNI	GCCGGC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	151, 157, 163, 169, 853
LmnI	GCTCC	3 cut(s)	360, 1003, 1026
Lsp1109I	GCAGC	2 cut(s)	609, 674
LweI	GCATC	2 cut(s)	574, 630
MaeI	CTAG	5 cut(s)	213, 219, 234, 413, 701
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	572, 658
MalI	GATC	5 cut(s)	153, 159, 165, 171, 855
MboI	GATC	5 cut(s)	151, 157, 163, 169, 853
MboII	GAAGA	5 cut(s)	181, 198, 293, 489, 998
MhlI	GDGCHC	4 cut(s)	379, 677, 1037, 1076
MluCI	AATT	5 cut(s)	55, 628, 723, 919, 968
MlyI	GAGTC	3 cut(s)	15, 278, 569
MmeI	TCCRAC	2 cut(s)	96, 768
MnlI	CCTC	9 cut(s)	62, 550, 643, 673, 686, 853, 901, 903, 1060
Mph1103I	ATGCAT	3 cut(s)	332, 475, 623
MroI	TCCGGA	1 cut(s)	856
MroNI	GCCGGC	1 cut(s)	429
MseI	TTAA	2 cut(s)	264, 1083
MslI	CAYNNNNRTG	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	4 cut(s)	85, 405, 430, 857
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	5 cut(s)	374, 618, 706, 921, 1041
NaeI	GCCGGC	1 cut(s)	431
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	5 cut(s)	151, 157, 163, 169, 853
NgoMIV	GCCGGC	1 cut(s)	429
NlaIII	CATG	4 cut(s)	178, 330, 543, 872
NlaIV	GGNNCC	3 cut(s)	37, 508, 930
NmeAIII	GCCGAG	1 cut(s)	812
NmuCI	GTSAC	2 cut(s)	572, 658
NsiI	ATGCAT	3 cut(s)	332, 475, 623
NspI	RCATGY	1 cut(s)	543
PceI	AGGCCT	1 cut(s)	761
PciI	ACATGT	1 cut(s)	539
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	599, 689
PleI	GAGTC	3 cut(s)	15, 278, 569
PpsI	GAGTC	3 cut(s)	15, 278, 569
Ppu21I	YACGTR	1 cut(s)	68
PscI	ACATGT	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	37, 508, 930
PstI	CTGCAG	2 cut(s)	692, 711
RsaI	GTAC	7 cut(s)	42, 217, 241, 322, 403, 529, 713
RsaNI	GTAC	7 cut(s)	41, 216, 240, 321, 402, 528, 712
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	264, 1083
SatI	GCNGC	2 cut(s)	598, 688
Sau3AI	GATC	5 cut(s)	151, 157, 163, 169, 853
ScaI	AGTACT	3 cut(s)	217, 241, 713
SchI	GAGTC	3 cut(s)	15, 278, 569
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	4 cut(s)	379, 677, 1037, 1076
SfaNI	GCATC	2 cut(s)	574, 630
SfcI	CTRYAG	2 cut(s)	688, 707
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	23, 263
SmoI	CTYRAG	2 cut(s)	23, 263
SnaBI	TACGTA	1 cut(s)	68
SpeI	ACTAGT	2 cut(s)	212, 218
Sse9I	AATT	5 cut(s)	55, 628, 723, 919, 968
SseBI	AGGCCT	1 cut(s)	761
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	5 cut(s)	213, 219, 234, 413, 701
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	3 cut(s)	148, 716, 815
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	279, 291
TasI	AATT	5 cut(s)	55, 628, 723, 919, 968
TatI	WGTACW	4 cut(s)	215, 239, 320, 711
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	264, 1083
Tru9I	TTAA	2 cut(s)	264, 1083
TscAI	CASTG	1 cut(s)	843
TseFI	GTSAC	2 cut(s)	572, 658
TseI	GCWGC	2 cut(s)	597, 687
Tsp45I	GTSAC	2 cut(s)	572, 658
TspDTI	ATGAA	4 cut(s)	17, 191, 235, 482
TspGWI	ACGGA	2 cut(s)	93, 956
TspRI	CASTG	1 cut(s)	843
Vha464I	CTTAAG	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	1072
XceI	RCATGY	1 cut(s)	543
XspI	CTAG	5 cut(s)	213, 219, 234, 413, 701
ZrmI	AGTACT	3 cut(s)	217, 241, 713
Zsp2I	ATGCAT	3 cut(s)	332, 475, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.