Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

18224599 .. 18225867

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1224100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGCAACAAACTTTGCACAGGAGAAAAGTTGGGCGGCAAAGTTTTCACAGGAAACAAACTGGGGAGCAAAGTTTTCACAGGAAAATACATAAGGGGTAAGCACATCTCCTTCGTGACCAAACATATAGTACTGCATACGAAAACAAAGACGAAGCAACATGAACATGTTGTTGATATTGATATTGATCCAACTTTTGTATGTGACTTGTGTGATGCGAAAAGTCATCTCGAAAACTCATTTAACATCAAGGGTTGTGCCCATTTTTACTGTCGAGAGTGCGTTGTTCAATACGTAGCGTCCAATCTCCAAAACAATGTCACATCCGCTGTTATGTGCCCTGTACAAGGCTGCACTGGCGCTCTAGACCCTGACTACTGTCGTCCAATCCTCCCAGACGACGTCTTTGATGGGTGGGGCAATGCCTTATGCGAATCTGCACTTGCGGATGAGAGTGATGATATCGATTCAACTTTTGTATGTGACTTCTGTGTTGAGCCAGTTGATCTAAAAGACTCCTTTAACATTAAGGGTTGCTCCCACTTTTACTGTCAAGACTGCATTGTTAAATTTGTAGCATCCAAGCTTGATGACAATGTATCTTCCATTACATGCCCTGCACAAGGCTGCACGGGCACATTAGAACTTGACTACTGCCGTCCTATCCTCCCAACCGACCTCTTTGATAGGTGGGGCAAGGCCATATGTGAATCTGTGGTTATCGGGCCTCAGAAGAAGTACTTATACTGTCCCTTCGTCGGGTGCTCTGCGCTGTTAATCCACGAGGGGCCAGAGGATACCAATCAGGCTCCGTGTCCTCATTGCAAAAGAGAGTTTTGCGCCAAGTGTAAGGTTCCTTGGCATACCGAATTCAATTGCTCCATGTTTCAGAAACTGAGAGATAAGGGCGAAGACGAGATGCTGGAAGAGCTTGCCAAGAATAAGAACTGGAGGAGATGTCCACGTTGCAGTTACTATGTTGAAAGAATAGATGGGTGCAGCTACATGAAATGCAGGTGCGGGTTTGCTTTCTGTTACAGTTGTGGAATTCAGGCTGTCGAACATACCCGTTATTGTCAAAGCTGTAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

365

Amino Acids

40.92

Weight (kDa)

6.45

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	230 - 293	2.6e-11	IBR domain, a half RING-finger domain
IBR	PF01485	306 - 355	5.3e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1005
AatII	GACGTC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	1005
AciI	CCGC	4 cut(s)	36, 327, 446, 1020
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	3 cut(s)	569, 869, 1047
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	132, 345, 740
AfiI	CCNNNNNNNGG	4 cut(s)	347, 623, 758, 759
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	290, 471, 874, 983
AluBI	AGCT	4 cut(s)	586, 931, 1002, 1083
AluI	AGCT	4 cut(s)	586, 931, 1002, 1083
Alw21I	GWGCWC	1 cut(s)	767
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	895
AoxI	GGCC	3 cut(s)	699, 725, 788
ApeKI	GCWGC	3 cut(s)	351, 627, 999
ApoI	RAATTY	3 cut(s)	569, 869, 1047
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspLEI	GCGC	3 cut(s)	362, 772, 842
AspS9I	GGNCC	2 cut(s)	725, 788
BaeGI	GKGCMC	3 cut(s)	262, 341, 638
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
BauI	CACGAG	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	767
BbvI	GCAGC	3 cut(s)	338, 614, 1011
BccI	CCATC	2 cut(s)	404, 986
BceAI	ACGGC	1 cut(s)	642
BciVI	GTATCC	1 cut(s)	790
BfaI	CTAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	1005
BfuI	GTATCC	1 cut(s)	790
BisI	GCNGC	4 cut(s)	37, 352, 628, 1000
BlsI	GCNGC	4 cut(s)	38, 353, 629, 1001
BmcAI	AGTACT	2 cut(s)	132, 740
BmgT120I	GGNCC	2 cut(s)	725, 788
BmiI	GGNNCC	3 cut(s)	789, 810, 855
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	3 cut(s)	205, 587, 909
BmuI	ACTGGG	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	970
Bsa29I	ATCGAT	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	2 cut(s)	186, 801
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	857
BsaXI	ACNNNNNCTCC	2 cut(s)	943, 973
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 623, 758, 759
Bse1I	ACTGG	4 cut(s)	66, 361, 500, 953
Bse3DI	GCAATG	2 cut(s)	427, 820
Bse8I	GATNNNNATC	2 cut(s)	186, 801
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	857
BseGI	GGATG	3 cut(s)	323, 454, 578
BseJI	GATNNNNATC	2 cut(s)	186, 801
BseLI	CCNNNNNNNGG	4 cut(s)	347, 623, 758, 759
BseMI	GCAATG	2 cut(s)	427, 820
BseMII	CTCAG	2 cut(s)	743, 887
BseNI	ACTGG	4 cut(s)	66, 361, 500, 953
BseRI	GAGGAG	1 cut(s)	967
BseSI	GKGCMC	3 cut(s)	262, 341, 638
BseXI	GCAGC	3 cut(s)	338, 614, 1011
BsgI	GTGCAG	5 cut(s)	337, 423, 603, 613, 1018
BshFI	GGCC	3 cut(s)	701, 727, 790
BshVI	ATCGAT	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	4 cut(s)	347, 623, 758, 759
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	701, 727, 790
Bsp1286I	GDGCHC	4 cut(s)	262, 341, 638, 767
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	187, 505
BspACI	CCGC	4 cut(s)	36, 327, 446, 1020
BspANI	GGCC	3 cut(s)	701, 727, 790
BspCNI	CTCAG	2 cut(s)	742, 888
BspDI	ATCGAT	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	789, 810, 855
BspMI	ACCTGC	1 cut(s)	1005
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	921
BsrDI	GCAATG	2 cut(s)	427, 820
BsrGI	TGTACA	1 cut(s)	343
BsrI	ACTGG	4 cut(s)	66, 361, 500, 953
BssECI	CCNNGG	1 cut(s)	857
BssMI	GATC	2 cut(s)	187, 505
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	782
BssT1I	CCWWGG	1 cut(s)	857
Bst2BI	CACGAG	1 cut(s)	782
Bst4CI	ACNGT	5 cut(s)	272, 380, 551, 749, 1040
Bst6I	CTCTTC	1 cut(s)	921
BstACI	GRCGYC	1 cut(s)	402
BstAUI	TGTACA	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	933
BstDEI	CTNAG	2 cut(s)	729, 896
BstENI	CCTNNNNNAGG	2 cut(s)	345, 621
BstF5I	GGATG	3 cut(s)	323, 454, 578
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	3 cut(s)	362, 772, 842
BstKTI	GATC	2 cut(s)	190, 508
BstMBI	GATC	2 cut(s)	187, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 633, 928
BstNSI	RCATGY	2 cut(s)	170, 615
BstPAI	GACNNNNGTC	1 cut(s)	378
BstSLI	GKGCMC	3 cut(s)	262, 341, 638
BstSNI	TACGTA	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	338, 614, 1011
BstV2I	GAAGAC	1 cut(s)	918
Bsu15I	ATCGAT	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	3 cut(s)	701, 727, 790
BsuTUI	ATCGAT	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	323, 454, 578
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	1005
Cac8I	GCNNGC	1 cut(s)	933
CaiI	CAGNNNCTG	1 cut(s)	895
CfoI	GCGC	3 cut(s)	362, 772, 842
Cfr13I	GGNCC	2 cut(s)	725, 788
ClaI	ATCGAT	1 cut(s)	465
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	131, 344, 739
CviAII	CATG	5 cut(s)	161, 167, 612, 883, 1006
CviQI	GTAC	3 cut(s)	131, 344, 739
DdeI	CTNAG	2 cut(s)	729, 896
DpnI	GATC	2 cut(s)	189, 507
DpnII	GATC	2 cut(s)	187, 505
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
Eco105I	TACGTA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	857
Eco32I	GATATC	1 cut(s)	463
EcoNI	CCTNNNNNAGG	2 cut(s)	345, 621
EcoRI	GAATTC	2 cut(s)	869, 1047
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	857
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	5 cut(s)	164, 170, 615, 886, 1009
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	5 cut(s)	160, 166, 611, 882, 1005
FauI	CCCGC	1 cut(s)	1013
FauNDI	CATATG	1 cut(s)	704
Fnu4HI	GCNGC	4 cut(s)	37, 352, 628, 1000
FokI	GGATG	3 cut(s)	310, 461, 565
Fsp4HI	GCNGC	4 cut(s)	37, 352, 628, 1000
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	3 cut(s)	361, 771, 841
GluI	GCNGC	4 cut(s)	37, 352, 628, 1000
GsuI	CTGGAG	1 cut(s)	970
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	701, 727, 790
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	3 cut(s)	362, 772, 842
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	164, 170, 615, 886, 1009
Hin6I	GCGC	3 cut(s)	360, 770, 840
HinP1I	GCGC	3 cut(s)	360, 770, 840
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	4 cut(s)	434, 467, 515, 710
Hpy166II	GTNNAC	1 cut(s)	962
Hpy188I	TCNGA	2 cut(s)	732, 891
Hpy188III	TCNNGA	5 cut(s)	115, 230, 275, 365, 554
Hpy8I	GTNNAC	1 cut(s)	962
Hpy99I	CGWCG	2 cut(s)	404, 761
HpyAV	CCTTC	2 cut(s)	121, 763
HpyCH4III	ACNGT	5 cut(s)	272, 380, 551, 749, 1040
HpyCH4IV	ACGT	3 cut(s)	294, 402, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 633, 928
HpyF3I	CTNAG	2 cut(s)	729, 896
HpySE526I	ACGT	3 cut(s)	294, 402, 964
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	5 cut(s)	164, 170, 615, 886, 1009
HspAI	GCGC	3 cut(s)	360, 770, 840
Kzo9I	GATC	2 cut(s)	187, 505
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	4 cut(s)	66, 542, 814, 884
Lsp1109I	GCAGC	3 cut(s)	338, 614, 1011
LweI	GCATC	3 cut(s)	205, 587, 909
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	3 cut(s)	294, 402, 964
MaeIII	GTNAC	6 cut(s)	115, 203, 319, 482, 971, 1034
MalI	GATC	2 cut(s)	189, 507
MboI	GATC	2 cut(s)	187, 505
MboII	GAAGA	4 cut(s)	594, 745, 923, 938
MfeI	CAATTG	1 cut(s)	874
MhlI	GDGCHC	4 cut(s)	262, 341, 638, 767
MluCI	AATT	4 cut(s)	569, 869, 874, 1047
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	8 cut(s)	401, 677, 689, 738, 778, 787, 828, 945
MseI	TTAA	5 cut(s)	243, 522, 528, 567, 776
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	874
MwoI	GCNNNNNNNGC	3 cut(s)	357, 633, 928
NdeI	CATATG	1 cut(s)	704
NdeII	GATC	2 cut(s)	187, 505
NlaIII	CATG	5 cut(s)	164, 170, 615, 886, 1009
NlaIV	GGNNCC	3 cut(s)	789, 810, 855
NmuCI	GTSAC	4 cut(s)	115, 203, 319, 482
NspI	RCATGY	2 cut(s)	170, 615
PaqCI	CACCTGC	1 cut(s)	1005
PciI	ACATGT	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	921
PfeI	GAWTC	3 cut(s)	434, 467, 710
PflFI	GACNNNGTC	1 cut(s)	401
PkrI	GCNGC	4 cut(s)	38, 353, 629, 1001
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	789, 810, 855
PspPI	GGNCC	2 cut(s)	725, 788
PstNI	CAGNNNCTG	1 cut(s)	895
PsyI	GACNNNGTC	1 cut(s)	401
RsaI	GTAC	3 cut(s)	132, 345, 740
RsaNI	GTAC	3 cut(s)	131, 344, 739
RseI	CAYNNNNRTG	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	5 cut(s)	243, 522, 528, 567, 776
SatI	GCNGC	4 cut(s)	37, 352, 628, 1000
Sau3AI	GATC	2 cut(s)	187, 505
Sau96I	GGNCC	2 cut(s)	725, 788
ScaI	AGTACT	2 cut(s)	132, 740
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	4 cut(s)	262, 341, 638, 767
SfaNI	GCATC	3 cut(s)	205, 587, 909
SmiMI	CAYNNNNRTG	1 cut(s)	165
SnaBI	TACGTA	1 cut(s)	295
Sse9I	AATT	4 cut(s)	569, 869, 874, 1047
SsiI	CCGC	4 cut(s)	36, 327, 446, 1020
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	5 cut(s)	272, 380, 551, 749, 1040
TaiI	ACGT	3 cut(s)	297, 405, 967
TaqI	TCGA	4 cut(s)	231, 274, 465, 1059
TasI	AATT	4 cut(s)	569, 869, 874, 1047
TatI	WGTACW	3 cut(s)	130, 343, 738
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	434, 467, 710
Tru1I	TTAA	5 cut(s)	243, 522, 528, 567, 776
Tru9I	TTAA	5 cut(s)	243, 522, 528, 567, 776
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	4 cut(s)	115, 203, 319, 482
TseI	GCWGC	3 cut(s)	351, 627, 999
Tsp45I	GTSAC	4 cut(s)	115, 203, 319, 482
TspDTI	ATGAA	2 cut(s)	177, 1022
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	401
XagI	CCTNNNNNAGG	2 cut(s)	345, 621
XapI	RAATTY	3 cut(s)	569, 869, 1047
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	2 cut(s)	170, 615
XspI	CTAG	1 cut(s)	365
ZraI	GACGTC	1 cut(s)	403
ZrmI	AGTACT	2 cut(s)	132, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.