MD02G1103400.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
8275329 .. 8276786
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1103400.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGGCAACAAAGTTTCCAACGGAAACAGTAGGAGCAGCAGCAGCAGCAAGAAATTGAGCAAGCACGTTTCCGTCAGAACCAAACACATAGGAGGATTACATACGAAGGAAATAAATTTGGGTTTCGCTCAGATCTTGGAGAAGAACCAACATGTTTATACTGATCCAACATTTGTATGTGACTTCTGTCTTCAGTTGATTCATCTGGAAAACTCATTCAACATCAAGGGTTGCACCCATTTTTACTGTCAAGAGTGCACTTTTAAATACGTAGTCTCCAGTCTCCGAATAAATGTCACATCCATTGTGTGCCCTGTACCGGACTGCCAGGGTGTCTTAGACCCAGATCACTGCCGTCAAATCCTTCCATCTGACGTCTTTGTTTCGTGGGGCAATGCTTTATATGAGTCTGTACTTGCCCCTGAGAGCGATATTGATTCGACCTTCATATGTGATTTCTGTGTTGAGCCAGTTAACCTGAAAGACTCATTTAACATAAAGGGTTGCACCCATTTTTACTGTCAAGGCTGCATTGTTAAACTCATAGCTTCCAAGCTGCAAGACAATGTCACTTGCATTACGTGCCCTGTACCGGACTGCAGCGGCGAGTTAGACATCGAGTACTGCCGTCCAATTATCCCGGAAGACGTCTTTGATCGGTGGGGAAAGGCCTTATGTGAATCTGTGGTTATGGACCCTCGGAGGAAGTACTTATACTGTCCCTACAACTCGTGCTCGGCGCTGTTGATTAATGAGGAACCAGAGGATACCAGTCAGTCTGTGTGTCCTCATTGCAATAGAGAATTTTGCGCCATGTGTAAGGTTCCTTGGCATACCGAATTTGATTGTGCCATGTTTCAGAAGCTGAAAGAGAAGGGCGAAGACGAGATGTTGGAAGTGCTTGCCAAGAATAAGAACTGGAGGAGGTGTCCAAAGTGCAATTATTACGTTGAAAGAAATGAGGGGTGTAGCTACATTTTATGCAGGTGTCGACATGCTTTCTGTCACAATTGTGGAGTAGAAGCCTCCGTAACTTCTCATACCCGTCTTTGTCCAAGCTGTAATGAATAA

Protein Analysis

357

Amino Acids

40.42

Weight (kDa)

6.12

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 220 - 283 1.2e-11 IBR domain, a half RING-finger domain
IBR PF01485 299 - 342 2e-06 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 975
AatII GACGTC 2 cut(s) 378, 651
Acc36I ACCTGC 1 cut(s) 975
AccI GTMKAC 1 cut(s) 991
AciI CCGC 1 cut(s) 603
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 3 cut(s) 115, 803, 839
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 2 cut(s) 375, 648
AfaI GTAC 5 cut(s) 318, 414, 591, 623, 710
AfiI CCNNNNNNNGG 2 cut(s) 319, 592
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 220, 953
AjnI CCWGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 1011
AluBI AGCT 5 cut(s) 548, 556, 865, 972, 1059
AluI AGCT 5 cut(s) 548, 556, 865, 972, 1059
Alw21I GWGCWC 2 cut(s) 260, 737
Alw26I GTCTC 2 cut(s) 280, 287
Alw44I GTGCAC 1 cut(s) 256
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 865
AoxI GGCC 1 cut(s) 669
ApaLI GTGCAC 1 cut(s) 256
ApeKI GCWGC 7 cut(s) 36, 39, 42, 45, 528, 556, 600
ApoI RAATTY 3 cut(s) 115, 803, 839
AseI ATTAAT 1 cut(s) 750
AspLEI GCGC 2 cut(s) 742, 812
AspS9I GGNCC 1 cut(s) 694
AsuC2I CCSGG 1 cut(s) 641
AvaII GGWCC 1 cut(s) 694
BaeGI GKGCMC 3 cut(s) 260, 314, 587
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
BauI CACGAG 1 cut(s) 730
BbsI GAAGAC 3 cut(s) 182, 651, 888
Bbv12I GWGCWC 2 cut(s) 260, 737
BbvI GCAGC 7 cut(s) 48, 51, 54, 57, 515, 543, 612
BccI CCATC 1 cut(s) 376
BceAI ACGGC 2 cut(s) 339, 612
BciT130I CCWGG 1 cut(s) 329
BciVI GTATCC 1 cut(s) 760
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 280, 287
BfmI CTRYAG 1 cut(s) 598
BfoI RGCGCY 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 975
BfuI GTATCC 1 cut(s) 760
BglII AGATCT 1 cut(s) 132
BisI GCNGC 8 cut(s) 37, 40, 43, 46, 529, 557, 601, 604
BlsI GCNGC 8 cut(s) 38, 41, 44, 47, 530, 558, 602, 605
BmcAI AGTACT 2 cut(s) 623, 710
Bme1390I CCNGG 2 cut(s) 329, 641
Bme18I GGWCC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 3 cut(s) 696, 759, 825
BmrFI CCNGG 2 cut(s) 329, 641
BoxI GACNNNNGTC 1 cut(s) 186
BpiI GAAGAC 3 cut(s) 182, 651, 888
BpmI CTGGAG 2 cut(s) 262, 940
BpuMI CCSGG 1 cut(s) 641
BsaAI YACGTR 2 cut(s) 271, 582
BsaHI GRCGYC 2 cut(s) 375, 648
BsaJI CCNNGG 3 cut(s) 328, 698, 827
BsaWI WCCGGW 2 cut(s) 319, 592
BsaXI ACNNNNNCTCC 4 cut(s) 260, 290, 913, 943
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 592
Bse1I ACTGG 4 cut(s) 279, 470, 771, 923
Bse3DI GCAATG 2 cut(s) 400, 790
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 328, 698, 827
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 319, 592
BseMI GCAATG 2 cut(s) 400, 790
BseMII CTCAG 2 cut(s) 143, 414
BseNI ACTGG 4 cut(s) 279, 470, 771, 923
BseRI GAGGAG 1 cut(s) 937
BseSI GKGCMC 3 cut(s) 260, 314, 587
BseXI GCAGC 7 cut(s) 48, 51, 54, 57, 515, 543, 612
BshFI GGCC 1 cut(s) 671
BsiHKAI GWGCWC 2 cut(s) 260, 737
BsiSI CCGG 3 cut(s) 320, 593, 641
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 2 cut(s) 319, 592
BsmAI GTCTC 2 cut(s) 280, 287
BsmFI GGGAC 1 cut(s) 705
BsnI GGCC 1 cut(s) 671
Bsp1286I GDGCHC 4 cut(s) 260, 314, 587, 737
Bsp143I GATC 4 cut(s) 132, 163, 346, 655
BspACI CCGC 1 cut(s) 603
BspANI GGCC 1 cut(s) 671
BspCNI CTCAG 2 cut(s) 142, 415
BspLI GGNNCC 3 cut(s) 696, 759, 825
BspMAI CTGCAG 1 cut(s) 602
BspMI ACCTGC 1 cut(s) 975
BspPI GGATC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 400, 790
BsrI ACTGG 4 cut(s) 279, 470, 771, 923
BssECI CCNNGG 3 cut(s) 328, 698, 827
BssMI GATC 4 cut(s) 132, 163, 346, 655
BssNI GRCGYC 2 cut(s) 375, 648
BssSI CACGAG 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 827
Bst2BI CACGAG 1 cut(s) 730
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 4 cut(s) 29, 248, 521, 719
BstACI GRCGYC 2 cut(s) 375, 648
BstAPI GCANNNNNTGC 1 cut(s) 582
BstBAI YACGTR 2 cut(s) 271, 582
BstC8I GCNNGC 2 cut(s) 62, 903
BstDEI CTNAG 3 cut(s) 129, 337, 423
BstF5I GGATG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 2 cut(s) 742, 812
BstKTI GATC 4 cut(s) 135, 166, 349, 658
BstMAI GTCTC 2 cut(s) 280, 287
BstMBI GATC 4 cut(s) 132, 163, 346, 655
BstMWI GCNNNNNNNGC 3 cut(s) 42, 45, 582
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 155, 998
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 327, 639
BstSFI CTRYAG 1 cut(s) 598
BstSLI GKGCMC 3 cut(s) 260, 314, 587
BstSNI TACGTA 1 cut(s) 271
BstV1I GCAGC 7 cut(s) 48, 51, 54, 57, 515, 543, 612
BstV2I GAAGAC 3 cut(s) 182, 651, 888
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 1 cut(s) 671
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 975
Cac8I GCNNGC 2 cut(s) 62, 903
CaiI CAGNNNCTG 1 cut(s) 865
CfoI GCGC 2 cut(s) 742, 812
Cfr13I GGNCC 1 cut(s) 694
Csp6I GTAC 5 cut(s) 317, 413, 590, 622, 709
CviAII CATG 4 cut(s) 152, 814, 853, 995
CviJI RGCY 9 cut(s) 469, 528, 548, 556, 671, 865, 972, 1025, 1059
CviKI_1 RGCY 9 cut(s) 469, 528, 548, 556, 671, 865, 972, 1025, 1059
CviQI GTAC 5 cut(s) 317, 413, 590, 622, 709
DdeI CTNAG 3 cut(s) 129, 337, 423
DpnI GATC 4 cut(s) 134, 165, 348, 657
DpnII GATC 4 cut(s) 132, 163, 346, 655
DraI TTTAAA 1 cut(s) 265
Eco105I TACGTA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 827
Eco147I AGGCCT 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 827
FaeI CATG 4 cut(s) 155, 817, 856, 998
FaqI GGGAC 1 cut(s) 705
FatI CATG 4 cut(s) 151, 813, 852, 994
FauNDI CATATG 1 cut(s) 449
FblI GTMKAC 1 cut(s) 991
Fnu4HI GCNGC 8 cut(s) 37, 40, 43, 46, 529, 557, 601, 604
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 8 cut(s) 37, 40, 43, 46, 529, 557, 601, 604
GlaI GCGC 2 cut(s) 741, 811
GluI GCNGC 8 cut(s) 37, 40, 43, 46, 529, 557, 601, 604
GsuI CTGGAG 2 cut(s) 262, 940
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 1 cut(s) 671
HapII CCGG 3 cut(s) 320, 593, 641
HhaI GCGC 2 cut(s) 742, 812
Hin1I GRCGYC 2 cut(s) 375, 648
Hin1II CATG 4 cut(s) 155, 817, 856, 998
Hin6I GCGC 2 cut(s) 740, 810
HinP1I GCGC 2 cut(s) 740, 810
HincII GTYRAC 2 cut(s) 475, 992
HindII GTYRAC 2 cut(s) 475, 992
HinfI GANTC 5 cut(s) 199, 407, 437, 485, 680
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 3 cut(s) 320, 593, 641
Hpy166II GTNNAC 3 cut(s) 258, 475, 992
Hpy188I TCNGA 6 cut(s) 77, 132, 287, 373, 702, 861
Hpy188III TCNNGA 2 cut(s) 206, 251
Hpy8I GTNNAC 3 cut(s) 258, 475, 992
HpyAV CCTTC 4 cut(s) 100, 374, 454, 868
HpyCH4III ACNGT 4 cut(s) 29, 248, 521, 719
HpyCH4IV ACGT 6 cut(s) 66, 270, 375, 581, 648, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 45, 582
HpyF3I CTNAG 3 cut(s) 129, 337, 423
HpySE526I ACGT 6 cut(s) 66, 270, 375, 581, 648, 948
Hsp92I GRCGYC 2 cut(s) 375, 648
Hsp92II CATG 4 cut(s) 155, 817, 856, 998
HspAI GCGC 2 cut(s) 740, 810
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 4 cut(s) 132, 163, 346, 655
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 7 cut(s) 48, 51, 54, 57, 515, 543, 612
MaeII ACGT 6 cut(s) 66, 270, 375, 581, 648, 948
MaeIII GTNAC 5 cut(s) 179, 295, 568, 1004, 1030
MalI GATC 4 cut(s) 134, 165, 348, 657
MboI GATC 4 cut(s) 132, 163, 346, 655
MboII GAAGA 4 cut(s) 154, 182, 656, 893
MfeI CAATTG 1 cut(s) 1009
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 4 cut(s) 260, 314, 587, 737
MluCI AATT 7 cut(s) 53, 115, 633, 803, 839, 940, 1009
MlyI GAGTC 2 cut(s) 416, 479
MmeI TCCRAC 3 cut(s) 42, 191, 873
MseI TTAA 5 cut(s) 264, 474, 492, 537, 750
MslI CAYNNNNRTG 2 cut(s) 175, 1011
MspA1I CMGCKG 1 cut(s) 603
MspI CCGG 3 cut(s) 320, 593, 641
MspR9I CCNGG 2 cut(s) 329, 641
MunI CAATTG 1 cut(s) 1009
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 42, 45, 582
NciI CCSGG 1 cut(s) 641
NdeI CATATG 1 cut(s) 449
NdeII GATC 4 cut(s) 132, 163, 346, 655
NlaIII CATG 4 cut(s) 155, 817, 856, 998
NlaIV GGNNCC 3 cut(s) 696, 759, 825
NmeAIII GCCGAG 1 cut(s) 716
NmuCI GTSAC 4 cut(s) 179, 295, 568, 1004
NspI RCATGY 2 cut(s) 155, 998
OliI CACNNNNGTG 1 cut(s) 1011
PaqCI CACCTGC 1 cut(s) 975
PceI AGGCCT 1 cut(s) 671
PciI ACATGT 1 cut(s) 151
PfeI GAWTC 3 cut(s) 199, 437, 680
PflFI GACNNNGTC 1 cut(s) 566
PfoI TCCNGGA 1 cut(s) 639
PkrI GCNGC 8 cut(s) 38, 41, 44, 47, 530, 558, 602, 605
PleI GAGTC 2 cut(s) 415, 479
PpsI GAGTC 2 cut(s) 415, 479
Ppu21I YACGTR 2 cut(s) 271, 582
PscI ACATGT 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 186
PshBI ATTAAT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 696, 759, 825
PspPI GGNCC 1 cut(s) 694
PstI CTGCAG 1 cut(s) 602
PstNI CAGNNNCTG 1 cut(s) 865
PsuI RGATCY 1 cut(s) 132
PsyI GACNNNGTC 1 cut(s) 566
RsaI GTAC 5 cut(s) 318, 414, 591, 623, 710
RsaNI GTAC 5 cut(s) 317, 413, 590, 622, 709
RseI CAYNNNNRTG 2 cut(s) 175, 1011
SalI GTCGAC 1 cut(s) 990
SaqAI TTAA 5 cut(s) 264, 474, 492, 537, 750
SatI GCNGC 8 cut(s) 37, 40, 43, 46, 529, 557, 601, 604
Sau3AI GATC 4 cut(s) 132, 163, 346, 655
Sau96I GGNCC 1 cut(s) 694
ScaI AGTACT 2 cut(s) 623, 710
SchI GAGTC 2 cut(s) 416, 479
ScrFI CCNGG 2 cut(s) 329, 641
SduI GDGCHC 4 cut(s) 260, 314, 587, 737
SfcI CTRYAG 1 cut(s) 598
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 2 cut(s) 175, 1011
SnaBI TACGTA 1 cut(s) 271
Sse9I AATT 7 cut(s) 53, 115, 633, 803, 839, 940, 1009
SseBI AGGCCT 1 cut(s) 671
SsiI CCGC 1 cut(s) 603
StuI AGGCCT 1 cut(s) 671
StyD4I CCNGG 2 cut(s) 327, 639
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 4 cut(s) 29, 248, 521, 719
TaiI ACGT 6 cut(s) 69, 273, 378, 584, 651, 951
TaqI TCGA 3 cut(s) 440, 618, 991
TasI AATT 7 cut(s) 53, 115, 633, 803, 839, 940, 1009
TatI WGTACW 3 cut(s) 412, 621, 708
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 3 cut(s) 199, 437, 680
Tru1I TTAA 5 cut(s) 264, 474, 492, 537, 750
Tru9I TTAA 5 cut(s) 264, 474, 492, 537, 750
TscAI CASTG 1 cut(s) 356
TseFI GTSAC 4 cut(s) 179, 295, 568, 1004
TseI GCWGC 7 cut(s) 36, 39, 42, 45, 528, 556, 600
Tsp45I GTSAC 4 cut(s) 179, 295, 568, 1004
TspDTI ATGAA 2 cut(s) 191, 436
TspGWI ACGGA 3 cut(s) 36, 61, 1018
TspRI CASTG 1 cut(s) 356
Tth111I GACNNNGTC 1 cut(s) 566
VneI GTGCAC 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 694
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 3 cut(s) 115, 803, 839
XceI RCATGY 2 cut(s) 155, 998
XmiI GTMKAC 1 cut(s) 991
ZraI GACGTC 2 cut(s) 376, 649
ZrmI AGTACT 2 cut(s) 623, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.