E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53690 |
| fragaria_vesca | FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930 |
| malus_domestica | MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1 |
| prunus_persica | Prupe.7G191400_v2.0.a1 |
| pyrus_communis | pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830 |
| rosa_chinensis | RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031 |
| rosa_laevigata | RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629 |
| rosa_multiflora | Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900 |
| rosa_rugosa | Rorug02G0055500 Rorug02G0055900 |
| rosa_samantha | Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900 |
| rosa_wichuraiana | Rw2G007880 Rw2G007930 Rw2G007940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 975 |
| AatII | GACGTC | 2 cut(s) | 378, 651 |
| Acc36I | ACCTGC | 1 cut(s) | 975 |
| AccI | GTMKAC | 1 cut(s) | 991 |
| AciI | CCGC | 1 cut(s) | 603 |
| AclWI | GGATC | 1 cut(s) | 158 |
| AcsI | RAATTY | 3 cut(s) | 115, 803, 839 |
| AcuI | CTGAAG | 1 cut(s) | 176 |
| AcyI | GRCGYC | 2 cut(s) | 375, 648 |
| AfaI | GTAC | 5 cut(s) | 318, 414, 591, 623, 710 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 319, 592 |
| AflIII | ACRYGT | 1 cut(s) | 151 |
| AgsI | TTSAA | 2 cut(s) | 220, 953 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| AleI | CACNNNNGTG | 1 cut(s) | 1011 |
| AluBI | AGCT | 5 cut(s) | 548, 556, 865, 972, 1059 |
| AluI | AGCT | 5 cut(s) | 548, 556, 865, 972, 1059 |
| Alw21I | GWGCWC | 2 cut(s) | 260, 737 |
| Alw26I | GTCTC | 2 cut(s) | 280, 287 |
| Alw44I | GTGCAC | 1 cut(s) | 256 |
| AlwI | GGATC | 1 cut(s) | 158 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 865 |
| AoxI | GGCC | 1 cut(s) | 669 |
| ApaLI | GTGCAC | 1 cut(s) | 256 |
| ApeKI | GCWGC | 7 cut(s) | 36, 39, 42, 45, 528, 556, 600 |
| ApoI | RAATTY | 3 cut(s) | 115, 803, 839 |
| AseI | ATTAAT | 1 cut(s) | 750 |
| AspLEI | GCGC | 2 cut(s) | 742, 812 |
| AspS9I | GGNCC | 1 cut(s) | 694 |
| AsuC2I | CCSGG | 1 cut(s) | 641 |
| AvaII | GGWCC | 1 cut(s) | 694 |
| BaeGI | GKGCMC | 3 cut(s) | 260, 314, 587 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 698, 730 |
| BauI | CACGAG | 1 cut(s) | 730 |
| BbsI | GAAGAC | 3 cut(s) | 182, 651, 888 |
| Bbv12I | GWGCWC | 2 cut(s) | 260, 737 |
| BbvI | GCAGC | 7 cut(s) | 48, 51, 54, 57, 515, 543, 612 |
| BccI | CCATC | 1 cut(s) | 376 |
| BceAI | ACGGC | 2 cut(s) | 339, 612 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BciVI | GTATCC | 1 cut(s) | 760 |
| BcnI | CCSGG | 1 cut(s) | 641 |
| BcoDI | GTCTC | 2 cut(s) | 280, 287 |
| BfmI | CTRYAG | 1 cut(s) | 598 |
| BfoI | RGCGCY | 1 cut(s) | 743 |
| BfuAI | ACCTGC | 1 cut(s) | 975 |
| BfuI | GTATCC | 1 cut(s) | 760 |
| BglII | AGATCT | 1 cut(s) | 132 |
| BisI | GCNGC | 8 cut(s) | 37, 40, 43, 46, 529, 557, 601, 604 |
| BlsI | GCNGC | 8 cut(s) | 38, 41, 44, 47, 530, 558, 602, 605 |
| BmcAI | AGTACT | 2 cut(s) | 623, 710 |
| Bme1390I | CCNGG | 2 cut(s) | 329, 641 |
| Bme18I | GGWCC | 1 cut(s) | 694 |
| BmgT120I | GGNCC | 1 cut(s) | 694 |
| BmiI | GGNNCC | 3 cut(s) | 696, 759, 825 |
| BmrFI | CCNGG | 2 cut(s) | 329, 641 |
| BoxI | GACNNNNGTC | 1 cut(s) | 186 |
| BpiI | GAAGAC | 3 cut(s) | 182, 651, 888 |
| BpmI | CTGGAG | 2 cut(s) | 262, 940 |
| BpuMI | CCSGG | 1 cut(s) | 641 |
| BsaAI | YACGTR | 2 cut(s) | 271, 582 |
| BsaHI | GRCGYC | 2 cut(s) | 375, 648 |
| BsaJI | CCNNGG | 3 cut(s) | 328, 698, 827 |
| BsaWI | WCCGGW | 2 cut(s) | 319, 592 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 260, 290, 913, 943 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 319, 592 |
| Bse1I | ACTGG | 4 cut(s) | 279, 470, 771, 923 |
| Bse3DI | GCAATG | 2 cut(s) | 400, 790 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseDI | CCNNGG | 3 cut(s) | 328, 698, 827 |
| BseGI | GGATG | 1 cut(s) | 299 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 319, 592 |
| BseMI | GCAATG | 2 cut(s) | 400, 790 |
| BseMII | CTCAG | 2 cut(s) | 143, 414 |
| BseNI | ACTGG | 4 cut(s) | 279, 470, 771, 923 |
| BseRI | GAGGAG | 1 cut(s) | 937 |
| BseSI | GKGCMC | 3 cut(s) | 260, 314, 587 |
| BseXI | GCAGC | 7 cut(s) | 48, 51, 54, 57, 515, 543, 612 |
| BshFI | GGCC | 1 cut(s) | 671 |
| BsiHKAI | GWGCWC | 2 cut(s) | 260, 737 |
| BsiSI | CCGG | 3 cut(s) | 320, 593, 641 |
| BslFI | GGGAC | 1 cut(s) | 705 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 319, 592 |
| BsmAI | GTCTC | 2 cut(s) | 280, 287 |
| BsmFI | GGGAC | 1 cut(s) | 705 |
| BsnI | GGCC | 1 cut(s) | 671 |
| Bsp1286I | GDGCHC | 4 cut(s) | 260, 314, 587, 737 |
| Bsp143I | GATC | 4 cut(s) | 132, 163, 346, 655 |
| BspACI | CCGC | 1 cut(s) | 603 |
| BspANI | GGCC | 1 cut(s) | 671 |
| BspCNI | CTCAG | 2 cut(s) | 142, 415 |
| BspLI | GGNNCC | 3 cut(s) | 696, 759, 825 |
| BspMAI | CTGCAG | 1 cut(s) | 602 |
| BspMI | ACCTGC | 1 cut(s) | 975 |
| BspPI | GGATC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 2 cut(s) | 400, 790 |
| BsrI | ACTGG | 4 cut(s) | 279, 470, 771, 923 |
| BssECI | CCNNGG | 3 cut(s) | 328, 698, 827 |
| BssMI | GATC | 4 cut(s) | 132, 163, 346, 655 |
| BssNI | GRCGYC | 2 cut(s) | 375, 648 |
| BssSI | CACGAG | 1 cut(s) | 730 |
| BssT1I | CCWWGG | 1 cut(s) | 827 |
| Bst2BI | CACGAG | 1 cut(s) | 730 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| Bst4CI | ACNGT | 4 cut(s) | 29, 248, 521, 719 |
| BstACI | GRCGYC | 2 cut(s) | 375, 648 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 582 |
| BstBAI | YACGTR | 2 cut(s) | 271, 582 |
| BstC8I | GCNNGC | 2 cut(s) | 62, 903 |
| BstDEI | CTNAG | 3 cut(s) | 129, 337, 423 |
| BstF5I | GGATG | 1 cut(s) | 299 |
| BstH2I | RGCGCY | 1 cut(s) | 743 |
| BstHHI | GCGC | 2 cut(s) | 742, 812 |
| BstKTI | GATC | 4 cut(s) | 135, 166, 349, 658 |
| BstMAI | GTCTC | 2 cut(s) | 280, 287 |
| BstMBI | GATC | 4 cut(s) | 132, 163, 346, 655 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 42, 45, 582 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstNSI | RCATGY | 2 cut(s) | 155, 998 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 186 |
| BstSCI | CCNGG | 2 cut(s) | 327, 639 |
| BstSFI | CTRYAG | 1 cut(s) | 598 |
| BstSLI | GKGCMC | 3 cut(s) | 260, 314, 587 |
| BstSNI | TACGTA | 1 cut(s) | 271 |
| BstV1I | GCAGC | 7 cut(s) | 48, 51, 54, 57, 515, 543, 612 |
| BstV2I | GAAGAC | 3 cut(s) | 182, 651, 888 |
| BstX2I | RGATCY | 1 cut(s) | 132 |
| BstYI | RGATCY | 1 cut(s) | 132 |
| BsuI | GTATCC | 1 cut(s) | 760 |
| BsuRI | GGCC | 1 cut(s) | 671 |
| BtsCI | GGATG | 1 cut(s) | 299 |
| BtsI | GCAGTG | 1 cut(s) | 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 349 |
| BveI | ACCTGC | 1 cut(s) | 975 |
| Cac8I | GCNNGC | 2 cut(s) | 62, 903 |
| CaiI | CAGNNNCTG | 1 cut(s) | 865 |
| CfoI | GCGC | 2 cut(s) | 742, 812 |
| Cfr13I | GGNCC | 1 cut(s) | 694 |
| Csp6I | GTAC | 5 cut(s) | 317, 413, 590, 622, 709 |
| CviAII | CATG | 4 cut(s) | 152, 814, 853, 995 |
| CviJI | RGCY | 9 cut(s) | 469, 528, 548, 556, 671, 865, 972, 1025, 1059 |
| CviKI_1 | RGCY | 9 cut(s) | 469, 528, 548, 556, 671, 865, 972, 1025, 1059 |
| CviQI | GTAC | 5 cut(s) | 317, 413, 590, 622, 709 |
| DdeI | CTNAG | 3 cut(s) | 129, 337, 423 |
| DpnI | GATC | 4 cut(s) | 134, 165, 348, 657 |
| DpnII | GATC | 4 cut(s) | 132, 163, 346, 655 |
| DraI | TTTAAA | 1 cut(s) | 265 |
| Eco105I | TACGTA | 1 cut(s) | 271 |
| Eco130I | CCWWGG | 1 cut(s) | 827 |
| Eco147I | AGGCCT | 1 cut(s) | 671 |
| Eco47I | GGWCC | 1 cut(s) | 694 |
| Eco57I | CTGAAG | 1 cut(s) | 176 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| EcoT14I | CCWWGG | 1 cut(s) | 827 |
| ErhI | CCWWGG | 1 cut(s) | 827 |
| FaeI | CATG | 4 cut(s) | 155, 817, 856, 998 |
| FaqI | GGGAC | 1 cut(s) | 705 |
| FatI | CATG | 4 cut(s) | 151, 813, 852, 994 |
| FauNDI | CATATG | 1 cut(s) | 449 |
| FblI | GTMKAC | 1 cut(s) | 991 |
| Fnu4HI | GCNGC | 8 cut(s) | 37, 40, 43, 46, 529, 557, 601, 604 |
| FokI | GGATG | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 8 cut(s) | 37, 40, 43, 46, 529, 557, 601, 604 |
| GlaI | GCGC | 2 cut(s) | 741, 811 |
| GluI | GCNGC | 8 cut(s) | 37, 40, 43, 46, 529, 557, 601, 604 |
| GsuI | CTGGAG | 2 cut(s) | 262, 940 |
| HaeII | RGCGCY | 1 cut(s) | 743 |
| HaeIII | GGCC | 1 cut(s) | 671 |
| HapII | CCGG | 3 cut(s) | 320, 593, 641 |
| HhaI | GCGC | 2 cut(s) | 742, 812 |
| Hin1I | GRCGYC | 2 cut(s) | 375, 648 |
| Hin1II | CATG | 4 cut(s) | 155, 817, 856, 998 |
| Hin6I | GCGC | 2 cut(s) | 740, 810 |
| HinP1I | GCGC | 2 cut(s) | 740, 810 |
| HincII | GTYRAC | 2 cut(s) | 475, 992 |
| HindII | GTYRAC | 2 cut(s) | 475, 992 |
| HinfI | GANTC | 5 cut(s) | 199, 407, 437, 485, 680 |
| HpaI | GTTAAC | 1 cut(s) | 475 |
| HpaII | CCGG | 3 cut(s) | 320, 593, 641 |
| Hpy166II | GTNNAC | 3 cut(s) | 258, 475, 992 |
| Hpy188I | TCNGA | 6 cut(s) | 77, 132, 287, 373, 702, 861 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 251 |
| Hpy8I | GTNNAC | 3 cut(s) | 258, 475, 992 |
| HpyAV | CCTTC | 4 cut(s) | 100, 374, 454, 868 |
| HpyCH4III | ACNGT | 4 cut(s) | 29, 248, 521, 719 |
| HpyCH4IV | ACGT | 6 cut(s) | 66, 270, 375, 581, 648, 948 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 42, 45, 582 |
| HpyF3I | CTNAG | 3 cut(s) | 129, 337, 423 |
| HpySE526I | ACGT | 6 cut(s) | 66, 270, 375, 581, 648, 948 |
| Hsp92I | GRCGYC | 2 cut(s) | 375, 648 |
| Hsp92II | CATG | 4 cut(s) | 155, 817, 856, 998 |
| HspAI | GCGC | 2 cut(s) | 740, 810 |
| KspAI | GTTAAC | 1 cut(s) | 475 |
| Kzo9I | GATC | 4 cut(s) | 132, 163, 346, 655 |
| LmnI | GCTCC | 1 cut(s) | 33 |
| Lsp1109I | GCAGC | 7 cut(s) | 48, 51, 54, 57, 515, 543, 612 |
| MaeII | ACGT | 6 cut(s) | 66, 270, 375, 581, 648, 948 |
| MaeIII | GTNAC | 5 cut(s) | 179, 295, 568, 1004, 1030 |
| MalI | GATC | 4 cut(s) | 134, 165, 348, 657 |
| MboI | GATC | 4 cut(s) | 132, 163, 346, 655 |
| MboII | GAAGA | 4 cut(s) | 154, 182, 656, 893 |
| MfeI | CAATTG | 1 cut(s) | 1009 |
| MflI | RGATCY | 1 cut(s) | 132 |
| MhlI | GDGCHC | 4 cut(s) | 260, 314, 587, 737 |
| MluCI | AATT | 7 cut(s) | 53, 115, 633, 803, 839, 940, 1009 |
| MlyI | GAGTC | 2 cut(s) | 416, 479 |
| MmeI | TCCRAC | 3 cut(s) | 42, 191, 873 |
| MseI | TTAA | 5 cut(s) | 264, 474, 492, 537, 750 |
| MslI | CAYNNNNRTG | 2 cut(s) | 175, 1011 |
| MspA1I | CMGCKG | 1 cut(s) | 603 |
| MspI | CCGG | 3 cut(s) | 320, 593, 641 |
| MspR9I | CCNGG | 2 cut(s) | 329, 641 |
| MunI | CAATTG | 1 cut(s) | 1009 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 42, 45, 582 |
| NciI | CCSGG | 1 cut(s) | 641 |
| NdeI | CATATG | 1 cut(s) | 449 |
| NdeII | GATC | 4 cut(s) | 132, 163, 346, 655 |
| NlaIII | CATG | 4 cut(s) | 155, 817, 856, 998 |
| NlaIV | GGNNCC | 3 cut(s) | 696, 759, 825 |
| NmeAIII | GCCGAG | 1 cut(s) | 716 |
| NmuCI | GTSAC | 4 cut(s) | 179, 295, 568, 1004 |
| NspI | RCATGY | 2 cut(s) | 155, 998 |
| OliI | CACNNNNGTG | 1 cut(s) | 1011 |
| PaqCI | CACCTGC | 1 cut(s) | 975 |
| PceI | AGGCCT | 1 cut(s) | 671 |
| PciI | ACATGT | 1 cut(s) | 151 |
| PfeI | GAWTC | 3 cut(s) | 199, 437, 680 |
| PflFI | GACNNNGTC | 1 cut(s) | 566 |
| PfoI | TCCNGGA | 1 cut(s) | 639 |
| PkrI | GCNGC | 8 cut(s) | 38, 41, 44, 47, 530, 558, 602, 605 |
| PleI | GAGTC | 2 cut(s) | 415, 479 |
| PpsI | GAGTC | 2 cut(s) | 415, 479 |
| Ppu21I | YACGTR | 2 cut(s) | 271, 582 |
| PscI | ACATGT | 1 cut(s) | 151 |
| PshAI | GACNNNNGTC | 1 cut(s) | 186 |
| PshBI | ATTAAT | 1 cut(s) | 750 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 3 cut(s) | 696, 759, 825 |
| PspPI | GGNCC | 1 cut(s) | 694 |
| PstI | CTGCAG | 1 cut(s) | 602 |
| PstNI | CAGNNNCTG | 1 cut(s) | 865 |
| PsuI | RGATCY | 1 cut(s) | 132 |
| PsyI | GACNNNGTC | 1 cut(s) | 566 |
| RsaI | GTAC | 5 cut(s) | 318, 414, 591, 623, 710 |
| RsaNI | GTAC | 5 cut(s) | 317, 413, 590, 622, 709 |
| RseI | CAYNNNNRTG | 2 cut(s) | 175, 1011 |
| SalI | GTCGAC | 1 cut(s) | 990 |
| SaqAI | TTAA | 5 cut(s) | 264, 474, 492, 537, 750 |
| SatI | GCNGC | 8 cut(s) | 37, 40, 43, 46, 529, 557, 601, 604 |
| Sau3AI | GATC | 4 cut(s) | 132, 163, 346, 655 |
| Sau96I | GGNCC | 1 cut(s) | 694 |
| ScaI | AGTACT | 2 cut(s) | 623, 710 |
| SchI | GAGTC | 2 cut(s) | 416, 479 |
| ScrFI | CCNGG | 2 cut(s) | 329, 641 |
| SduI | GDGCHC | 4 cut(s) | 260, 314, 587, 737 |
| SfcI | CTRYAG | 1 cut(s) | 598 |
| SinI | GGWCC | 1 cut(s) | 694 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 175, 1011 |
| SnaBI | TACGTA | 1 cut(s) | 271 |
| Sse9I | AATT | 7 cut(s) | 53, 115, 633, 803, 839, 940, 1009 |
| SseBI | AGGCCT | 1 cut(s) | 671 |
| SsiI | CCGC | 1 cut(s) | 603 |
| StuI | AGGCCT | 1 cut(s) | 671 |
| StyD4I | CCNGG | 2 cut(s) | 327, 639 |
| StyI | CCWWGG | 1 cut(s) | 827 |
| TaaI | ACNGT | 4 cut(s) | 29, 248, 521, 719 |
| TaiI | ACGT | 6 cut(s) | 69, 273, 378, 584, 651, 951 |
| TaqI | TCGA | 3 cut(s) | 440, 618, 991 |
| TasI | AATT | 7 cut(s) | 53, 115, 633, 803, 839, 940, 1009 |
| TatI | WGTACW | 3 cut(s) | 412, 621, 708 |
| TauI | GCSGC | 1 cut(s) | 606 |
| TfiI | GAWTC | 3 cut(s) | 199, 437, 680 |
| Tru1I | TTAA | 5 cut(s) | 264, 474, 492, 537, 750 |
| Tru9I | TTAA | 5 cut(s) | 264, 474, 492, 537, 750 |
| TscAI | CASTG | 1 cut(s) | 356 |
| TseFI | GTSAC | 4 cut(s) | 179, 295, 568, 1004 |
| TseI | GCWGC | 7 cut(s) | 36, 39, 42, 45, 528, 556, 600 |
| Tsp45I | GTSAC | 4 cut(s) | 179, 295, 568, 1004 |
| TspDTI | ATGAA | 2 cut(s) | 191, 436 |
| TspGWI | ACGGA | 3 cut(s) | 36, 61, 1018 |
| TspRI | CASTG | 1 cut(s) | 356 |
| Tth111I | GACNNNGTC | 1 cut(s) | 566 |
| VneI | GTGCAC | 1 cut(s) | 256 |
| VpaK11BI | GGWCC | 1 cut(s) | 694 |
| VspI | ATTAAT | 1 cut(s) | 750 |
| XapI | RAATTY | 3 cut(s) | 115, 803, 839 |
| XceI | RCATGY | 2 cut(s) | 155, 998 |
| XmiI | GTMKAC | 1 cut(s) | 991 |
| ZraI | GACGTC | 2 cut(s) | 376, 649 |
| ZrmI | AGTACT | 2 cut(s) | 623, 710 |