Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8279667 .. 8280656

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1103500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCATAAGGTACTCCTCTTATTCAAGATCAAGGGTTGCACCCATTTTTACTGTGAAAAATGTATTGTTAAATTTGTTGAGTCCAACCTCGAATACAATGTCACAAACATTATGTGCCCCTTACCGGGCTGCCTCGGCATGTTAGACCTTGAGTATTGCCGTCCAATTCTCCCACGCGCCGTCATTGACAGGTGGTGCAATGCCTTGAGAAGAAAGAAGATTATTACATGGACGAGTAAATTGACTGACTACAAGTTCTTGTACTGCCCCTACGAGGATTGCTCAGCCCTGTCGTTGCTTCATAAGAATTATGATGGCACCAGATTGTCTTGTTATGTATGTTTTTATTGCAAGAGAGACTTCTGCGCTACTTGTAAGGTTCCTTGGCATACAGGATTTGATTGTACCAATAGCTATGAAGAGTGGATGGTGGAGGAGCTTGGGAAGAAAAGTAACTGGAAGAGGTGCGCAAGTTGCAATTACAACGTCGAAAAATCTGATGGGTGCGATAACATGAGATGCAGGTCAGCTATATATACACACTTCTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

185

Amino Acids

21.68

Weight (kDa)

8.51

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	83 - 135	4e-08	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	3 cut(s)	12, 263, 406
AfiI	CCNNNNNNNGG	3 cut(s)	124, 125, 274
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	3 cut(s)	414, 439, 530
AluI	AGCT	3 cut(s)	414, 439, 530
Alw26I	GTCTC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspLEI	GCGC	3 cut(s)	179, 368, 470
AsuC2I	CCSGG	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	3 cut(s)	308, 421, 494
BceAI	ACGGC	2 cut(s)	144, 164
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	130
BlpI	GCTNAGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	319, 381
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	509
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu1102I	GCTNAGC	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	170, 226
BpuMI	CCSGG	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	133, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 125, 274
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	133, 383
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	124, 125, 274
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	5, 449
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	124, 125, 274
BsmAI	GTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	319, 381
BspMI	ACCTGC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	133, 383
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	414, 455
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	179, 368, 470
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 474
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	513
CfoI	GCGC	3 cut(s)	179, 368, 470
Csp6I	GTAC	3 cut(s)	11, 262, 405
CviAII	CATG	3 cut(s)	139, 228, 514
CviJI	RGCY	5 cut(s)	129, 287, 414, 439, 530
CviKI_1	RGCY	5 cut(s)	129, 287, 414, 439, 530
CviQI	GTAC	3 cut(s)	11, 262, 405
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	414, 455
EarI	CTCTTC	2 cut(s)	414, 455
Eco130I	CCWWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	383
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	3 cut(s)	142, 231, 517
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	3 cut(s)	138, 227, 513
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	130
FspI	TGCGCA	1 cut(s)	469
GlaI	GCGC	3 cut(s)	178, 367, 469
GluI	GCNGC	1 cut(s)	130
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	3 cut(s)	179, 368, 470
Hin1II	CATG	3 cut(s)	142, 231, 517
Hin6I	GCGC	3 cut(s)	177, 366, 468
HinP1I	GCGC	3 cut(s)	177, 366, 468
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	6 cut(s)	4, 39, 198, 351, 477, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 474
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	142, 231, 517
HspAI	GCGC	3 cut(s)	177, 366, 468
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	7 cut(s)	138, 175, 302, 334, 378, 442, 508
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	509
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	100, 452
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	5 cut(s)	222, 229, 431, 457, 472
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	5 cut(s)	71, 165, 239, 307, 478
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	26, 98, 143, 268, 427, 456
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	69, 553
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	135, 474
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	142, 231, 517
NlaIV	GGNNCC	2 cut(s)	319, 381
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	100
NsbI	TGCGCA	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	319, 381
RsaI	GTAC	3 cut(s)	12, 263, 406
RsaNI	GTAC	3 cut(s)	11, 262, 405
SaqAI	TTAA	2 cut(s)	69, 553
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	149, 205
SmoI	CTYRAG	2 cut(s)	149, 205
Sse9I	AATT	5 cut(s)	71, 165, 239, 307, 478
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	2 cut(s)	90, 489
TasI	AATT	5 cut(s)	71, 165, 239, 307, 478
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	69, 553
Tru9I	TTAA	2 cut(s)	69, 553
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	290, 432
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.