Rw2G007930

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
7764063 .. 7765426
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007930.1

Sequence Viewer

Length: 1203 bp
ATGATGAAGAACTATCACCAGATGAAAAAGGGTGCAGAACGACCCAAGGAAATCGGTGCCGTACTGCGTAGCCTCAAATCCATTTTACGTAAACTCTCACTAAGCCGGAAAATAACCAAGTCTCCGTCGCCGTCTCAGCCTCTGATGTTGGAGAACCAACCCCATCATCATCACACCGTTGATCACGATCACGATCACATGAACCCCCTAATCTTCTCCCATGGACAATCTTCCACTAGTACTAGTTTTGATATTCCTAGTAGTACTTTCATATGTGGTTTGTGTCTTAAGCCTATTCAACTCGAAGACTCATTCGACTTCAAGGGCTGTCCCCATTTTTATTGTGCTCCATGCATTGTGAACTTTGTAGTCTCCAAGCTCCAAGACAATGCCGATTGGGCTCTGCAATGCCCTATGCCAACCTGTACCGGAACACTAGACCCTGACTACTGCCGGCCAATCCTTCCGAGACAGGTTTTTGATTCGTGGATAAATGCATTGTGTTATCAGATTGAGCAATCTTCTTATGCTGCCGAAAGCAGTAATAGTGGTACTACTTTTACATGTGATATTTGTGTTGAGGAAAAGCATCTGAGTGACTCGTTTAGTGTCAAAGATTGCAGCCATTTTTACTGCCACCAATGCATCGTCAATTTTGTGGTGTCAAAGCTGGAGGACAATGTGACCTCCATTGTGTGCCCCGAGCCGGGCTGCAGAGGAGTGCTAGACCTGCAGTACTGTCAGCCAATTCTCCCGAAAGATGTTCTTGAATGGTGGGGGAAGGCCTTGTGCGAAAATGTTATTTTGGGGTCGGAGAACAATGACAAGTATTTCTACTGTCCCTTCAAGGATTGCTCGGCACTGCTGGTTGTTGATGATCCGGAGGATGAGCATGACATATACAAGTCTCGGTGTCCTCATTGCAAGAGAGAGGTTTGCTTGAATTGCAAGGTTCCTTGGCATACGGAGTTCAACTGCGACAAGTTTCAGAAATTGAGAGACAAGGGTGAAGATGAGATGGTGAAGGAGCTTGCCAAGAAAAAGAAGTGGAGGAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAAGAGGGGTGCACTTACATTAAATGCAGGTGTAGGCATGCTTTCTGTTACAACTGTGGAATAGCAGCTGCCGTTGATGGTACACATACATATCATTGTCCAAGCTGTAAAAAGTAA

Protein Analysis

400

Amino Acids

45.79

Weight (kDa)

7.18

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 272 - 326 9.9e-10 IBR domain, a half RING-finger domain
IBR PF01485 340 - 383 6.5e-06 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1104
Acc36I ACCTGC 2 cut(s) 738, 1104
AccB1I GGYRCC 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 880
AclWI GGATC 1 cut(s) 872
AcoI YGGCCR 1 cut(s) 455
AfaI GTAC 7 cut(s) 63, 241, 265, 427, 553, 737, 1168
AfiI CCNNNNNNNGG 2 cut(s) 706, 707
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 6 cut(s) 299, 322, 770, 847, 943, 973
AhlI ACTAGT 2 cut(s) 236, 242
AluBI AGCT 5 cut(s) 379, 670, 1030, 1154, 1191
AluI AGCT 5 cut(s) 379, 670, 1030, 1154, 1191
Alw21I GWGCWC 2 cut(s) 349, 1100
Alw26I GTCTC 6 cut(s) 126, 138, 376, 463, 912, 993
Alw44I GTGCAC 1 cut(s) 1096
AlwI GGATC 1 cut(s) 872
AlwNI CAGNNNCTG 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 880
AoxI GGCC 2 cut(s) 455, 783
ApaLI GTGCAC 1 cut(s) 1096
ApeKI GCWGC 5 cut(s) 530, 621, 711, 1151, 1154
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 3 cut(s) 8, 1019, 1033
AvaI CYCGRG 1 cut(s) 701
BaeGI GKGCMC 3 cut(s) 701, 1061, 1100
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 349, 1100
BbvI GCAGC 5 cut(s) 517, 633, 698, 1141, 1163
BccI CCATC 3 cut(s) 171, 1012, 1157
BceAI ACGGC 3 cut(s) 44, 115, 1142
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 6 cut(s) 126, 138, 376, 463, 912, 993
BcuI ACTAGT 2 cut(s) 236, 242
BfaI CTAG 5 cut(s) 237, 243, 258, 437, 725
BfmI CTRYAG 2 cut(s) 712, 731
BfrI CTTAAG 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 738, 1104
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 5 cut(s) 531, 622, 712, 1152, 1155
BlsI GCNGC 5 cut(s) 532, 623, 713, 1153, 1156
BmcAI AGTACT 3 cut(s) 241, 265, 737
Bme1390I CCNGG 1 cut(s) 708
BmeT110I CYCGRG 1 cut(s) 701
BmiI GGNNCC 2 cut(s) 58, 954
BmrFI CCNGG 1 cut(s) 708
BmsI GCATC 2 cut(s) 598, 654
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 692
BpuMI CCSGG 1 cut(s) 708
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 2 cut(s) 186, 192
BsaJI CCNNGG 3 cut(s) 45, 220, 956
BsaWI WCCGGW 2 cut(s) 428, 880
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 706, 707
Bse118I RCCGGY 1 cut(s) 453
Bse3DI GCAATG 2 cut(s) 413, 919
Bse8I GATNNNNATC 2 cut(s) 186, 192
BseAI TCCGGA 1 cut(s) 880
BseDI CCNNGG 3 cut(s) 45, 220, 956
BseGI GGATG 1 cut(s) 892
BseJI GATNNNNATC 2 cut(s) 186, 192
BseLI CCNNNNNNNGG 2 cut(s) 706, 707
BseMI GCAATG 2 cut(s) 413, 919
BseMII CTCAG 2 cut(s) 149, 584
BseRI GAGGAG 1 cut(s) 732
BseSI GKGCMC 3 cut(s) 701, 1061, 1100
BseXI GCAGC 5 cut(s) 517, 633, 698, 1141, 1163
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 2 cut(s) 457, 785
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 349, 1100
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 5 cut(s) 106, 429, 454, 707, 881
BslFI GGGAC 2 cut(s) 315, 825
BslI CCNNNNNNNGG 2 cut(s) 706, 707
BsmAI GTCTC 6 cut(s) 126, 138, 376, 463, 912, 993
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 315, 825
BsnI GGCC 2 cut(s) 457, 785
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 5 cut(s) 349, 403, 701, 1061, 1100
Bsp13I TCCGGA 1 cut(s) 880
Bsp143I GATC 4 cut(s) 181, 187, 193, 877
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 2 cut(s) 457, 785
BspCNI CTCAG 2 cut(s) 148, 585
BspEI TCCGGA 1 cut(s) 880
BspLI GGNNCC 2 cut(s) 58, 954
BspMAI CTGCAG 2 cut(s) 716, 735
BspMI ACCTGC 2 cut(s) 738, 1104
BspPI GGATC 1 cut(s) 872
BspT107I GGYRCC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 413, 919
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 3 cut(s) 45, 220, 956
BssMI GATC 4 cut(s) 181, 187, 193, 877
BssT1I CCWWGG 3 cut(s) 45, 220, 956
Bst4CI ACNGT 4 cut(s) 178, 740, 839, 1142
BstAFI CTTAAG 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 455, 1032, 1125
BstDEI CTNAG 3 cut(s) 101, 135, 593
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 892
BstKTI GATC 4 cut(s) 184, 190, 196, 880
BstMAI GTCTC 6 cut(s) 126, 138, 376, 463, 912, 993
BstMBI GATC 4 cut(s) 181, 187, 193, 877
BstMWI GCNNNNNNNGC 6 cut(s) 136, 398, 642, 730, 945, 1065
BstNSI RCATGY 2 cut(s) 567, 1127
BstSCI CCNGG 1 cut(s) 706
BstSFI CTRYAG 2 cut(s) 712, 731
BstSLI GKGCMC 3 cut(s) 701, 1061, 1100
BstSNI TACGTA 1 cut(s) 89
BstV1I GCAGC 5 cut(s) 517, 633, 698, 1141, 1163
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 457, 785
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 892
BtsI GCAGTG 1 cut(s) 860
BtsIMutI CAGTG 1 cut(s) 860
BveI ACCTGC 2 cut(s) 738, 1104
Cac8I GCNNGC 3 cut(s) 455, 1032, 1125
CaiI CAGNNNCTG 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 453
Csp6I GTAC 7 cut(s) 62, 240, 264, 426, 552, 736, 1167
CviAII CATG 6 cut(s) 199, 221, 351, 564, 893, 1124
CviQI GTAC 7 cut(s) 62, 240, 264, 426, 552, 736, 1167
DdeI CTNAG 3 cut(s) 101, 135, 593
DpnI GATC 4 cut(s) 183, 189, 195, 879
DpnII GATC 4 cut(s) 181, 187, 193, 877
EaeI YGGCCR 1 cut(s) 455
Eco105I TACGTA 1 cut(s) 89
Eco130I CCWWGG 3 cut(s) 45, 220, 956
Eco147I AGGCCT 1 cut(s) 785
Eco24I GRGCYC 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 701
EcoT14I CCWWGG 3 cut(s) 45, 220, 956
EcoT22I ATGCAT 3 cut(s) 356, 499, 647
EcoT38I GRGCYC 1 cut(s) 403
ErhI CCWWGG 3 cut(s) 45, 220, 956
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 6 cut(s) 202, 224, 354, 567, 896, 1127
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 315, 825
FatI CATG 6 cut(s) 198, 220, 350, 563, 892, 1123
FauNDI CATATG 1 cut(s) 272
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 531, 622, 712, 1152, 1155
FokI GGATG 1 cut(s) 899
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 5 cut(s) 531, 622, 712, 1152, 1155
FspBI CTAG 5 cut(s) 237, 243, 258, 437, 725
GluI GCNGC 5 cut(s) 531, 622, 712, 1152, 1155
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 2 cut(s) 457, 785
HapII CCGG 5 cut(s) 106, 429, 454, 707, 881
Hin1II CATG 6 cut(s) 202, 224, 354, 567, 896, 1127
HinfI GANTC 3 cut(s) 308, 482, 599
HpaII CCGG 5 cut(s) 106, 429, 454, 707, 881
HphI GGTGA 3 cut(s) 8, 1019, 1033
Hpy166II GTNNAC 4 cut(s) 92, 361, 1098, 1169
Hpy188I TCNGA 6 cut(s) 144, 468, 510, 594, 814, 990
Hpy188III TCNNGA 5 cut(s) 185, 191, 754, 767, 881
Hpy8I GTNNAC 4 cut(s) 92, 361, 1098, 1169
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 473, 775, 853, 1018
HpyCH4III ACNGT 4 cut(s) 178, 740, 839, 1142
HpyCH4IV ACGT 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 398, 642, 730, 945, 1065
HpyF3I CTNAG 3 cut(s) 101, 135, 593
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 6 cut(s) 202, 224, 354, 567, 896, 1127
Kpn2I TCCGGA 1 cut(s) 880
KroI GCCGGC 1 cut(s) 453
KroNI GCCGGC 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 4 cut(s) 181, 187, 193, 877
LmnI GCTCC 3 cut(s) 352, 384, 1027
Lsp1109I GCAGC 5 cut(s) 517, 633, 698, 1141, 1163
LweI GCATC 2 cut(s) 598, 654
MaeI CTAG 5 cut(s) 237, 243, 258, 437, 725
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 596, 682, 1133
MalI GATC 4 cut(s) 183, 189, 195, 879
MboI GATC 4 cut(s) 181, 187, 193, 877
MboII GAAGA 6 cut(s) 19, 205, 222, 317, 513, 1022
MhlI GDGCHC 5 cut(s) 349, 403, 701, 1061, 1100
MluCI AATT 4 cut(s) 652, 747, 943, 992
MlyI GAGTC 2 cut(s) 302, 593
MmeI TCCRAC 2 cut(s) 129, 792
Mph1103I ATGCAT 3 cut(s) 356, 499, 647
MroI TCCGGA 1 cut(s) 880
MroNI GCCGGC 1 cut(s) 453
MseI TTAA 2 cut(s) 288, 1107
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 1154
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 5 cut(s) 106, 429, 454, 707, 881
MspR9I CCNGG 1 cut(s) 708
MwoI GCNNNNNNNGC 6 cut(s) 136, 398, 642, 730, 945, 1065
NaeI GCCGGC 1 cut(s) 455
NciI CCSGG 1 cut(s) 708
NcoI CCATGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 272
NdeII GATC 4 cut(s) 181, 187, 193, 877
NgoMIV GCCGGC 1 cut(s) 453
NlaIII CATG 6 cut(s) 202, 224, 354, 567, 896, 1127
NlaIV GGNNCC 2 cut(s) 58, 954
NmeAIII GCCGAG 1 cut(s) 836
NmuCI GTSAC 2 cut(s) 596, 682
NsiI ATGCAT 3 cut(s) 356, 499, 647
NspI RCATGY 2 cut(s) 567, 1127
PaeI GCATGC 1 cut(s) 1127
PaqCI CACCTGC 1 cut(s) 1104
PceI AGGCCT 1 cut(s) 785
PciI ACATGT 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 482
PkrI GCNGC 5 cut(s) 532, 623, 713, 1153, 1156
PleI GAGTC 2 cut(s) 302, 593
PpsI GAGTC 2 cut(s) 302, 593
Ppu21I YACGTR 1 cut(s) 89
PscI ACATGT 1 cut(s) 563
PspN4I GGNNCC 2 cut(s) 58, 954
PstI CTGCAG 2 cut(s) 716, 735
PstNI CAGNNNCTG 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 7 cut(s) 63, 241, 265, 427, 553, 737, 1168
RsaNI GTAC 7 cut(s) 62, 240, 264, 426, 552, 736, 1167
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 2 cut(s) 288, 1107
SatI GCNGC 5 cut(s) 531, 622, 712, 1152, 1155
Sau3AI GATC 4 cut(s) 181, 187, 193, 877
ScaI AGTACT 3 cut(s) 241, 265, 737
SchI GAGTC 2 cut(s) 302, 593
ScrFI CCNGG 1 cut(s) 708
SduI GDGCHC 5 cut(s) 349, 403, 701, 1061, 1100
SfaNI GCATC 2 cut(s) 598, 654
SfcI CTRYAG 2 cut(s) 712, 731
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SnaBI TACGTA 1 cut(s) 89
SpeI ACTAGT 2 cut(s) 236, 242
SphI GCATGC 1 cut(s) 1127
Sse9I AATT 4 cut(s) 652, 747, 943, 992
SseBI AGGCCT 1 cut(s) 785
SspMI CTAG 5 cut(s) 237, 243, 258, 437, 725
StuI AGGCCT 1 cut(s) 785
StyD4I CCNGG 1 cut(s) 706
StyI CCWWGG 3 cut(s) 45, 220, 956
TaaI ACNGT 4 cut(s) 178, 740, 839, 1142
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 303, 315
TasI AATT 4 cut(s) 652, 747, 943, 992
TatI WGTACW 3 cut(s) 239, 263, 735
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 2 cut(s) 288, 1107
Tru9I TTAA 2 cut(s) 288, 1107
TscAI CASTG 1 cut(s) 867
TseFI GTSAC 2 cut(s) 596, 682
TseI GCWGC 5 cut(s) 530, 621, 711, 1151, 1154
Tsp45I GTSAC 2 cut(s) 596, 682
TspDTI ATGAA 4 cut(s) 20, 38, 215, 259
TspGWI ACGGA 2 cut(s) 114, 980
TspRI CASTG 1 cut(s) 867
Vha464I CTTAAG 1 cut(s) 287
VneI GTGCAC 1 cut(s) 1096
XceI RCATGY 2 cut(s) 567, 1127
XspI CTAG 5 cut(s) 237, 243, 258, 437, 725
ZrmI AGTACT 3 cut(s) 241, 265, 737
Zsp2I ATGCAT 3 cut(s) 356, 499, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.