E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53690 |
| fragaria_vesca | FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930 |
| malus_domestica | MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1 |
| prunus_persica | Prupe.7G191400_v2.0.a1 |
| pyrus_communis | pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830 |
| rosa_chinensis | RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031 |
| rosa_laevigata | RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629 |
| rosa_multiflora | Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900 |
| rosa_rugosa | Rorug02G0055500 Rorug02G0055900 |
| rosa_samantha | Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900 |
| rosa_wichuraiana | Rw2G007880 Rw2G007930 Rw2G007940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1104 |
| Acc36I | ACCTGC | 2 cut(s) | 738, 1104 |
| AccB1I | GGYRCC | 1 cut(s) | 56 |
| AccIII | TCCGGA | 1 cut(s) | 880 |
| AclWI | GGATC | 1 cut(s) | 872 |
| AcoI | YGGCCR | 1 cut(s) | 455 |
| AfaI | GTAC | 7 cut(s) | 63, 241, 265, 427, 553, 737, 1168 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 706, 707 |
| AflII | CTTAAG | 1 cut(s) | 287 |
| AflIII | ACRYGT | 1 cut(s) | 563 |
| AgsI | TTSAA | 6 cut(s) | 299, 322, 770, 847, 943, 973 |
| AhlI | ACTAGT | 2 cut(s) | 236, 242 |
| AluBI | AGCT | 5 cut(s) | 379, 670, 1030, 1154, 1191 |
| AluI | AGCT | 5 cut(s) | 379, 670, 1030, 1154, 1191 |
| Alw21I | GWGCWC | 2 cut(s) | 349, 1100 |
| Alw26I | GTCTC | 6 cut(s) | 126, 138, 376, 463, 912, 993 |
| Alw44I | GTGCAC | 1 cut(s) | 1096 |
| AlwI | GGATC | 1 cut(s) | 872 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 142 |
| Ama87I | CYCGRG | 1 cut(s) | 701 |
| Aor13HI | TCCGGA | 1 cut(s) | 880 |
| AoxI | GGCC | 2 cut(s) | 455, 783 |
| ApaLI | GTGCAC | 1 cut(s) | 1096 |
| ApeKI | GCWGC | 5 cut(s) | 530, 621, 711, 1151, 1154 |
| AsuC2I | CCSGG | 1 cut(s) | 708 |
| AsuHPI | GGTGA | 3 cut(s) | 8, 1019, 1033 |
| AvaI | CYCGRG | 1 cut(s) | 701 |
| BaeGI | GKGCMC | 3 cut(s) | 701, 1061, 1100 |
| BanI | GGYRCC | 1 cut(s) | 56 |
| BanII | GRGCYC | 1 cut(s) | 403 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| Bbv12I | GWGCWC | 2 cut(s) | 349, 1100 |
| BbvI | GCAGC | 5 cut(s) | 517, 633, 698, 1141, 1163 |
| BccI | CCATC | 3 cut(s) | 171, 1012, 1157 |
| BceAI | ACGGC | 3 cut(s) | 44, 115, 1142 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcnI | CCSGG | 1 cut(s) | 708 |
| BcoDI | GTCTC | 6 cut(s) | 126, 138, 376, 463, 912, 993 |
| BcuI | ACTAGT | 2 cut(s) | 236, 242 |
| BfaI | CTAG | 5 cut(s) | 237, 243, 258, 437, 725 |
| BfmI | CTRYAG | 2 cut(s) | 712, 731 |
| BfrI | CTTAAG | 1 cut(s) | 287 |
| BfuAI | ACCTGC | 2 cut(s) | 738, 1104 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 398 |
| BisI | GCNGC | 5 cut(s) | 531, 622, 712, 1152, 1155 |
| BlsI | GCNGC | 5 cut(s) | 532, 623, 713, 1153, 1156 |
| BmcAI | AGTACT | 3 cut(s) | 241, 265, 737 |
| Bme1390I | CCNGG | 1 cut(s) | 708 |
| BmeT110I | CYCGRG | 1 cut(s) | 701 |
| BmiI | GGNNCC | 2 cut(s) | 58, 954 |
| BmrFI | CCNGG | 1 cut(s) | 708 |
| BmsI | GCATC | 2 cut(s) | 598, 654 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| BpmI | CTGGAG | 1 cut(s) | 692 |
| BpuMI | CCSGG | 1 cut(s) | 708 |
| BsaAI | YACGTR | 1 cut(s) | 89 |
| BsaBI | GATNNNNATC | 2 cut(s) | 186, 192 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 220, 956 |
| BsaWI | WCCGGW | 2 cut(s) | 428, 880 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 106, 136 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 706, 707 |
| Bse118I | RCCGGY | 1 cut(s) | 453 |
| Bse3DI | GCAATG | 2 cut(s) | 413, 919 |
| Bse8I | GATNNNNATC | 2 cut(s) | 186, 192 |
| BseAI | TCCGGA | 1 cut(s) | 880 |
| BseDI | CCNNGG | 3 cut(s) | 45, 220, 956 |
| BseGI | GGATG | 1 cut(s) | 892 |
| BseJI | GATNNNNATC | 2 cut(s) | 186, 192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 706, 707 |
| BseMI | GCAATG | 2 cut(s) | 413, 919 |
| BseMII | CTCAG | 2 cut(s) | 149, 584 |
| BseRI | GAGGAG | 1 cut(s) | 732 |
| BseSI | GKGCMC | 3 cut(s) | 701, 1061, 1100 |
| BseXI | GCAGC | 5 cut(s) | 517, 633, 698, 1141, 1163 |
| BsgI | GTGCAG | 1 cut(s) | 54 |
| BshFI | GGCC | 2 cut(s) | 457, 785 |
| BshNI | GGYRCC | 1 cut(s) | 56 |
| BsiHKAI | GWGCWC | 2 cut(s) | 349, 1100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 701 |
| BsiSI | CCGG | 5 cut(s) | 106, 429, 454, 707, 881 |
| BslFI | GGGAC | 2 cut(s) | 315, 825 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 706, 707 |
| BsmAI | GTCTC | 6 cut(s) | 126, 138, 376, 463, 912, 993 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 2 cut(s) | 315, 825 |
| BsnI | GGCC | 2 cut(s) | 457, 785 |
| BsoBI | CYCGRG | 1 cut(s) | 701 |
| Bsp1286I | GDGCHC | 5 cut(s) | 349, 403, 701, 1061, 1100 |
| Bsp13I | TCCGGA | 1 cut(s) | 880 |
| Bsp143I | GATC | 4 cut(s) | 181, 187, 193, 877 |
| Bsp19I | CCATGG | 1 cut(s) | 220 |
| BspANI | GGCC | 2 cut(s) | 457, 785 |
| BspCNI | CTCAG | 2 cut(s) | 148, 585 |
| BspEI | TCCGGA | 1 cut(s) | 880 |
| BspLI | GGNNCC | 2 cut(s) | 58, 954 |
| BspMAI | CTGCAG | 2 cut(s) | 716, 735 |
| BspMI | ACCTGC | 2 cut(s) | 738, 1104 |
| BspPI | GGATC | 1 cut(s) | 872 |
| BspT107I | GGYRCC | 1 cut(s) | 56 |
| BspTI | CTTAAG | 1 cut(s) | 287 |
| BsrDI | GCAATG | 2 cut(s) | 413, 919 |
| BsrFI | RCCGGY | 1 cut(s) | 453 |
| BssAI | RCCGGY | 1 cut(s) | 453 |
| BssECI | CCNNGG | 3 cut(s) | 45, 220, 956 |
| BssMI | GATC | 4 cut(s) | 181, 187, 193, 877 |
| BssT1I | CCWWGG | 3 cut(s) | 45, 220, 956 |
| Bst4CI | ACNGT | 4 cut(s) | 178, 740, 839, 1142 |
| BstAFI | CTTAAG | 1 cut(s) | 287 |
| BstBAI | YACGTR | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 455, 1032, 1125 |
| BstDEI | CTNAG | 3 cut(s) | 101, 135, 593 |
| BstDSI | CCRYGG | 1 cut(s) | 220 |
| BstF5I | GGATG | 1 cut(s) | 892 |
| BstKTI | GATC | 4 cut(s) | 184, 190, 196, 880 |
| BstMAI | GTCTC | 6 cut(s) | 126, 138, 376, 463, 912, 993 |
| BstMBI | GATC | 4 cut(s) | 181, 187, 193, 877 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 136, 398, 642, 730, 945, 1065 |
| BstNSI | RCATGY | 2 cut(s) | 567, 1127 |
| BstSCI | CCNGG | 1 cut(s) | 706 |
| BstSFI | CTRYAG | 2 cut(s) | 712, 731 |
| BstSLI | GKGCMC | 3 cut(s) | 701, 1061, 1100 |
| BstSNI | TACGTA | 1 cut(s) | 89 |
| BstV1I | GCAGC | 5 cut(s) | 517, 633, 698, 1141, 1163 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| BsuRI | GGCC | 2 cut(s) | 457, 785 |
| BtgI | CCRYGG | 1 cut(s) | 220 |
| BtsCI | GGATG | 1 cut(s) | 892 |
| BtsI | GCAGTG | 1 cut(s) | 860 |
| BtsIMutI | CAGTG | 1 cut(s) | 860 |
| BveI | ACCTGC | 2 cut(s) | 738, 1104 |
| Cac8I | GCNNGC | 3 cut(s) | 455, 1032, 1125 |
| CaiI | CAGNNNCTG | 1 cut(s) | 142 |
| Cfr10I | RCCGGY | 1 cut(s) | 453 |
| Csp6I | GTAC | 7 cut(s) | 62, 240, 264, 426, 552, 736, 1167 |
| CviAII | CATG | 6 cut(s) | 199, 221, 351, 564, 893, 1124 |
| CviQI | GTAC | 7 cut(s) | 62, 240, 264, 426, 552, 736, 1167 |
| DdeI | CTNAG | 3 cut(s) | 101, 135, 593 |
| DpnI | GATC | 4 cut(s) | 183, 189, 195, 879 |
| DpnII | GATC | 4 cut(s) | 181, 187, 193, 877 |
| EaeI | YGGCCR | 1 cut(s) | 455 |
| Eco105I | TACGTA | 1 cut(s) | 89 |
| Eco130I | CCWWGG | 3 cut(s) | 45, 220, 956 |
| Eco147I | AGGCCT | 1 cut(s) | 785 |
| Eco24I | GRGCYC | 1 cut(s) | 403 |
| Eco88I | CYCGRG | 1 cut(s) | 701 |
| EcoT14I | CCWWGG | 3 cut(s) | 45, 220, 956 |
| EcoT22I | ATGCAT | 3 cut(s) | 356, 499, 647 |
| EcoT38I | GRGCYC | 1 cut(s) | 403 |
| ErhI | CCWWGG | 3 cut(s) | 45, 220, 956 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 6 cut(s) | 202, 224, 354, 567, 896, 1127 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 750, 782 |
| FaqI | GGGAC | 2 cut(s) | 315, 825 |
| FatI | CATG | 6 cut(s) | 198, 220, 350, 563, 892, 1123 |
| FauNDI | CATATG | 1 cut(s) | 272 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 5 cut(s) | 531, 622, 712, 1152, 1155 |
| FokI | GGATG | 1 cut(s) | 899 |
| FriOI | GRGCYC | 1 cut(s) | 403 |
| Fsp4HI | GCNGC | 5 cut(s) | 531, 622, 712, 1152, 1155 |
| FspBI | CTAG | 5 cut(s) | 237, 243, 258, 437, 725 |
| GluI | GCNGC | 5 cut(s) | 531, 622, 712, 1152, 1155 |
| GsuI | CTGGAG | 1 cut(s) | 692 |
| HaeIII | GGCC | 2 cut(s) | 457, 785 |
| HapII | CCGG | 5 cut(s) | 106, 429, 454, 707, 881 |
| Hin1II | CATG | 6 cut(s) | 202, 224, 354, 567, 896, 1127 |
| HinfI | GANTC | 3 cut(s) | 308, 482, 599 |
| HpaII | CCGG | 5 cut(s) | 106, 429, 454, 707, 881 |
| HphI | GGTGA | 3 cut(s) | 8, 1019, 1033 |
| Hpy166II | GTNNAC | 4 cut(s) | 92, 361, 1098, 1169 |
| Hpy188I | TCNGA | 6 cut(s) | 144, 468, 510, 594, 814, 990 |
| Hpy188III | TCNNGA | 5 cut(s) | 185, 191, 754, 767, 881 |
| Hpy8I | GTNNAC | 4 cut(s) | 92, 361, 1098, 1169 |
| Hpy99I | CGWCG | 1 cut(s) | 130 |
| HpyAV | CCTTC | 4 cut(s) | 473, 775, 853, 1018 |
| HpyCH4III | ACNGT | 4 cut(s) | 178, 740, 839, 1142 |
| HpyCH4IV | ACGT | 1 cut(s) | 88 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 136, 398, 642, 730, 945, 1065 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 135, 593 |
| HpySE526I | ACGT | 1 cut(s) | 88 |
| Hsp92II | CATG | 6 cut(s) | 202, 224, 354, 567, 896, 1127 |
| Kpn2I | TCCGGA | 1 cut(s) | 880 |
| KroI | GCCGGC | 1 cut(s) | 453 |
| KroNI | GCCGGC | 1 cut(s) | 455 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 4 cut(s) | 181, 187, 193, 877 |
| LmnI | GCTCC | 3 cut(s) | 352, 384, 1027 |
| Lsp1109I | GCAGC | 5 cut(s) | 517, 633, 698, 1141, 1163 |
| LweI | GCATC | 2 cut(s) | 598, 654 |
| MaeI | CTAG | 5 cut(s) | 237, 243, 258, 437, 725 |
| MaeII | ACGT | 1 cut(s) | 88 |
| MaeIII | GTNAC | 3 cut(s) | 596, 682, 1133 |
| MalI | GATC | 4 cut(s) | 183, 189, 195, 879 |
| MboI | GATC | 4 cut(s) | 181, 187, 193, 877 |
| MboII | GAAGA | 6 cut(s) | 19, 205, 222, 317, 513, 1022 |
| MhlI | GDGCHC | 5 cut(s) | 349, 403, 701, 1061, 1100 |
| MluCI | AATT | 4 cut(s) | 652, 747, 943, 992 |
| MlyI | GAGTC | 2 cut(s) | 302, 593 |
| MmeI | TCCRAC | 2 cut(s) | 129, 792 |
| Mph1103I | ATGCAT | 3 cut(s) | 356, 499, 647 |
| MroI | TCCGGA | 1 cut(s) | 880 |
| MroNI | GCCGGC | 1 cut(s) | 453 |
| MseI | TTAA | 2 cut(s) | 288, 1107 |
| MslI | CAYNNNNRTG | 1 cut(s) | 594 |
| MspA1I | CMGCKG | 1 cut(s) | 1154 |
| MspCI | CTTAAG | 1 cut(s) | 287 |
| MspI | CCGG | 5 cut(s) | 106, 429, 454, 707, 881 |
| MspR9I | CCNGG | 1 cut(s) | 708 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 136, 398, 642, 730, 945, 1065 |
| NaeI | GCCGGC | 1 cut(s) | 455 |
| NciI | CCSGG | 1 cut(s) | 708 |
| NcoI | CCATGG | 1 cut(s) | 220 |
| NdeI | CATATG | 1 cut(s) | 272 |
| NdeII | GATC | 4 cut(s) | 181, 187, 193, 877 |
| NgoMIV | GCCGGC | 1 cut(s) | 453 |
| NlaIII | CATG | 6 cut(s) | 202, 224, 354, 567, 896, 1127 |
| NlaIV | GGNNCC | 2 cut(s) | 58, 954 |
| NmeAIII | GCCGAG | 1 cut(s) | 836 |
| NmuCI | GTSAC | 2 cut(s) | 596, 682 |
| NsiI | ATGCAT | 3 cut(s) | 356, 499, 647 |
| NspI | RCATGY | 2 cut(s) | 567, 1127 |
| PaeI | GCATGC | 1 cut(s) | 1127 |
| PaqCI | CACCTGC | 1 cut(s) | 1104 |
| PceI | AGGCCT | 1 cut(s) | 785 |
| PciI | ACATGT | 1 cut(s) | 563 |
| PdiI | GCCGGC | 1 cut(s) | 455 |
| PfeI | GAWTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 5 cut(s) | 532, 623, 713, 1153, 1156 |
| PleI | GAGTC | 2 cut(s) | 302, 593 |
| PpsI | GAGTC | 2 cut(s) | 302, 593 |
| Ppu21I | YACGTR | 1 cut(s) | 89 |
| PscI | ACATGT | 1 cut(s) | 563 |
| PspN4I | GGNNCC | 2 cut(s) | 58, 954 |
| PstI | CTGCAG | 2 cut(s) | 716, 735 |
| PstNI | CAGNNNCTG | 1 cut(s) | 142 |
| PvuII | CAGCTG | 1 cut(s) | 1154 |
| RsaI | GTAC | 7 cut(s) | 63, 241, 265, 427, 553, 737, 1168 |
| RsaNI | GTAC | 7 cut(s) | 62, 240, 264, 426, 552, 736, 1167 |
| RseI | CAYNNNNRTG | 1 cut(s) | 594 |
| SaqAI | TTAA | 2 cut(s) | 288, 1107 |
| SatI | GCNGC | 5 cut(s) | 531, 622, 712, 1152, 1155 |
| Sau3AI | GATC | 4 cut(s) | 181, 187, 193, 877 |
| ScaI | AGTACT | 3 cut(s) | 241, 265, 737 |
| SchI | GAGTC | 2 cut(s) | 302, 593 |
| ScrFI | CCNGG | 1 cut(s) | 708 |
| SduI | GDGCHC | 5 cut(s) | 349, 403, 701, 1061, 1100 |
| SfaNI | GCATC | 2 cut(s) | 598, 654 |
| SfcI | CTRYAG | 2 cut(s) | 712, 731 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 594 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| SnaBI | TACGTA | 1 cut(s) | 89 |
| SpeI | ACTAGT | 2 cut(s) | 236, 242 |
| SphI | GCATGC | 1 cut(s) | 1127 |
| Sse9I | AATT | 4 cut(s) | 652, 747, 943, 992 |
| SseBI | AGGCCT | 1 cut(s) | 785 |
| SspMI | CTAG | 5 cut(s) | 237, 243, 258, 437, 725 |
| StuI | AGGCCT | 1 cut(s) | 785 |
| StyD4I | CCNGG | 1 cut(s) | 706 |
| StyI | CCWWGG | 3 cut(s) | 45, 220, 956 |
| TaaI | ACNGT | 4 cut(s) | 178, 740, 839, 1142 |
| TaiI | ACGT | 1 cut(s) | 91 |
| TaqI | TCGA | 2 cut(s) | 303, 315 |
| TasI | AATT | 4 cut(s) | 652, 747, 943, 992 |
| TatI | WGTACW | 3 cut(s) | 239, 263, 735 |
| TfiI | GAWTC | 1 cut(s) | 482 |
| Tru1I | TTAA | 2 cut(s) | 288, 1107 |
| Tru9I | TTAA | 2 cut(s) | 288, 1107 |
| TscAI | CASTG | 1 cut(s) | 867 |
| TseFI | GTSAC | 2 cut(s) | 596, 682 |
| TseI | GCWGC | 5 cut(s) | 530, 621, 711, 1151, 1154 |
| Tsp45I | GTSAC | 2 cut(s) | 596, 682 |
| TspDTI | ATGAA | 4 cut(s) | 20, 38, 215, 259 |
| TspGWI | ACGGA | 2 cut(s) | 114, 980 |
| TspRI | CASTG | 1 cut(s) | 867 |
| Vha464I | CTTAAG | 1 cut(s) | 287 |
| VneI | GTGCAC | 1 cut(s) | 1096 |
| XceI | RCATGY | 2 cut(s) | 567, 1127 |
| XspI | CTAG | 5 cut(s) | 237, 243, 258, 437, 725 |
| ZrmI | AGTACT | 3 cut(s) | 241, 265, 737 |
| Zsp2I | ATGCAT | 3 cut(s) | 356, 499, 647 |