Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

7775974 .. 7787320

Gene Structure 11347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGAATCTTCAAATCCTGAAAGTAATAGTGCTGATACTGATTCATTCAAGAGTATTACTAGAACTAGTACTGGTTCATTCAAGAGTATTACCAGTACTGATGAGCAAAGTAGTACTTTCATATGTGGTATGTGTATTATGCCAAGTCATCTGGAAGACTATTTCAACGTCAAGGGTTGCAAGTTGCAACCATTTTTATTGTCGGCACTGCATTGTGAATTTCGTTGTGTCCAAGCTCCAAGACAATGTTACATCTATTGTGTGCCCAGAAAGAGGCTGTAGAGGAGTGTTAAAACCTGAGTGCTGTCGCTCAATCCTCCCAAACGAAATCTTTGATAGCTGGATCAATGCCTTATGGGATCAAAATGGGGAATCTTCAAATATAGACAGCAATAATACTTTCGAATGTGATTTATGTGTTGAAGCAATTCACCTGGAAGACTCATTTGACATCAAGGGTTGCAATCATTTTTACTGTCGCCAATGCATTGTTAATTATTTTGTATCGTCCAAGCTCCAGGAAAATGTTGCATCCATTGCGTGCCCTGAACCAGGCTGCAGGGGAGTGTTAGATCCTGAGTACTGTCGTCCAATCCTCCCAAACGATGTGTTTGATCAGTGGGGAAAAGCTGTTGTTGAAAATCTGATCGCTGGATCTGAGACTTTGAAGGCCTTCTACTGTCCCTTCAAGGATTGCTCAGCTATGTTGATTGATGATGGTAATAAGATTATACAGAAATCAGAATGTCCATATTGTAAGAAAGTGTTCTGCGCACAGTGTAAGGTCCCTTGGCACGCAAACATTGACTGTGTCGAGTTTCAGAAGTTGAATGAAGGTGAGAGGGAAAGGGAAGATATCATGTTGAGGAACCTTGCACAGAAGGAAAAATGGAGGAGGTGTCCAAGTTGCCAATATTATGTTGCAAAGAAAAGTAGCTGCTCATACATCAAATGTGTTGACTTTTTGTGTTTTTGCCGGTGCCGATTTGCTTTCTGCTGCCATTGTGGAAAAGCAGCTCCCGTAGTTTCTCGTACTCATATTTGTCCGAGCTGTAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

354

Amino Acids

40.38

Weight (kDa)

7.79

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	225 - 271	9.9e-11	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	981
AclWI	GGATC	4 cut(s)	353, 369, 569, 664
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	5 cut(s)	72, 99, 117, 584, 1036
AfiI	CCNNNNNNNGG	2 cut(s)	275, 554
AhlI	ACTAGT	1 cut(s)	67
AjnI	CCWGG	3 cut(s)	435, 519, 553
AluBI	AGCT	8 cut(s)	238, 342, 517, 632, 704, 939, 1019, 1053
AluI	AGCT	8 cut(s)	238, 342, 517, 632, 704, 939, 1019, 1053
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	4 cut(s)	353, 369, 569, 664
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	4 cut(s)	558, 939, 999, 1016
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	3 cut(s)	429, 674, 767
AspLEI	GCGC	1 cut(s)	776
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	2 cut(s)	425, 851
AsuII	TTCGAA	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	787
BaeGI	GKGCMC	2 cut(s)	269, 548
BanI	GGYRCC	1 cut(s)	981
BarI	GAAGNNNNNNTAC	2 cut(s)	662, 694
BbsI	GAAGAC	2 cut(s)	164, 447
BbvI	GCAGC	4 cut(s)	545, 926, 986, 1028
BccI	CCATC	1 cut(s)	713
BciT130I	CCWGG	3 cut(s)	437, 521, 555
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	656
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	2 cut(s)	62, 68
BfmI	CTRYAG	2 cut(s)	280, 559
BisI	GCNGC	4 cut(s)	559, 940, 1000, 1017
BlpI	GCTNAGC	1 cut(s)	700
BlsI	GCNGC	4 cut(s)	560, 941, 1001, 1018
BmcAI	AGTACT	4 cut(s)	72, 99, 117, 584
Bme1390I	CCNGG	3 cut(s)	437, 521, 555
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	3 cut(s)	789, 872, 983
BmrFI	CCNGG	3 cut(s)	437, 521, 555
BmsI	GCATC	1 cut(s)	542
BpiI	GAAGAC	2 cut(s)	164, 447
BpmI	CTGGAG	1 cut(s)	503
Bpu1102I	GCTNAGC	1 cut(s)	700
Bpu14I	TTCGAA	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	791
BsaXI	ACNNNNNCTCC	2 cut(s)	886, 916
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 554
Bse118I	RCCGGY	1 cut(s)	978
Bse1I	ACTGG	2 cut(s)	78, 95
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	3 cut(s)	437, 521, 555
BseDI	CCNNGG	1 cut(s)	791
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	2 cut(s)	275, 554
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	4 cut(s)	291, 570, 651, 714
BseNI	ACTGG	2 cut(s)	78, 95
BseRI	GAGGAG	2 cut(s)	300, 910
BseSI	GKGCMC	2 cut(s)	269, 548
BseXI	GCAGC	4 cut(s)	545, 926, 986, 1028
BshFI	GGCC	1 cut(s)	674
BshNI	GGYRCC	1 cut(s)	981
BsiSI	CCGG	1 cut(s)	979
BslFI	GGGAC	2 cut(s)	669, 773
BslI	CCNNNNNNNGG	2 cut(s)	275, 554
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	669, 773
BsnI	GGCC	1 cut(s)	674
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	269, 548
Bsp143I	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
Bsp1720I	GCTNAGC	1 cut(s)	700
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	4 cut(s)	292, 571, 652, 713
BspLI	GGNNCC	3 cut(s)	789, 872, 983
BspMAI	CTGCAG	1 cut(s)	563
BspPI	GGATC	4 cut(s)	353, 369, 569, 664
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	981
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	978
BsrI	ACTGG	2 cut(s)	78, 95
BssAI	RCCGGY	1 cut(s)	978
BssECI	CCNNGG	1 cut(s)	791
BssMI	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	3 cut(s)	437, 521, 555
Bst4CI	ACNGT	5 cut(s)	479, 587, 683, 780, 812
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	544, 798
BstDEI	CTNAG	4 cut(s)	300, 579, 660, 700
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	6 cut(s)	348, 364, 577, 619, 651, 659
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	3 cut(s)	437, 521, 555
BstSCI	CCNGG	3 cut(s)	435, 519, 553
BstSFI	CTRYAG	2 cut(s)	280, 559
BstSLI	GKGCMC	2 cut(s)	269, 548
BstV1I	GCAGC	4 cut(s)	545, 926, 986, 1028
BstV2I	GAAGAC	2 cut(s)	164, 447
BstX2I	RGATCY	2 cut(s)	574, 656
BstYI	RGATCY	2 cut(s)	574, 656
BsuRI	GGCC	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	533
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	208, 626, 785
Cac8I	GCNNGC	2 cut(s)	544, 798
CfoI	GCGC	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	978
Cfr13I	GGNCC	1 cut(s)	787
Csp6I	GTAC	5 cut(s)	71, 98, 116, 583, 1035
CviAII	CATG	1 cut(s)	862
CviQI	GTAC	5 cut(s)	71, 98, 116, 583, 1035
DdeI	CTNAG	4 cut(s)	300, 579, 660, 700
DpnI	GATC	6 cut(s)	347, 363, 576, 618, 650, 658
DpnII	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
Eco130I	CCWWGG	1 cut(s)	791
Eco147I	AGGCCT	1 cut(s)	674
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	435, 519, 553
EcoRV	GATATC	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	791
EcoT22I	ATGCAT	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	1 cut(s)	865
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	2 cut(s)	669, 773
FatI	CATG	1 cut(s)	861
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	4 cut(s)	559, 940, 1000, 1017
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	4 cut(s)	559, 940, 1000, 1017
FspBI	CTAG	2 cut(s)	62, 68
FspI	TGCGCA	1 cut(s)	775
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	4 cut(s)	559, 940, 1000, 1017
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	674
HapII	CCGG	1 cut(s)	979
HhaI	GCGC	1 cut(s)	776
Hin1II	CATG	1 cut(s)	865
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HinfI	GANTC	4 cut(s)	7, 43, 374, 443
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	2 cut(s)	425, 851
Hpy166II	GTNNAC	1 cut(s)	961
Hpy188I	TCNGA	5 cut(s)	648, 661, 745, 825, 1050
Hpy188III	TCNNGA	5 cut(s)	19, 51, 84, 154, 578
Hpy8I	GTNNAC	1 cut(s)	961
HpyAV	CCTTC	5 cut(s)	664, 685, 697, 830, 877
HpyCH4III	ACNGT	5 cut(s)	479, 587, 683, 780, 812
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	9 cut(s)	182, 189, 213, 465, 489, 533, 561, 878, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	4 cut(s)	300, 579, 660, 700
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	865
HspAI	GCGC	1 cut(s)	774
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
LmnI	GCTCC	3 cut(s)	243, 522, 1024
Lsp1109I	GCAGC	4 cut(s)	545, 926, 986, 1028
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	2 cut(s)	62, 68
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	250, 1055
MalI	GATC	6 cut(s)	347, 363, 576, 618, 650, 658
MboI	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
MboII	GAAGA	4 cut(s)	169, 369, 452, 866
MflI	RGATCY	2 cut(s)	574, 656
MhlI	GDGCHC	2 cut(s)	269, 548
MluCI	AATT	3 cut(s)	220, 429, 496
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	8 cut(s)	269, 278, 329, 608, 837, 861, 888, 891
Mph1103I	ATGCAT	1 cut(s)	491
MroXI	GAANNNNTTC	3 cut(s)	429, 674, 767
MseI	TTAA	3 cut(s)	293, 495, 1063
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	3 cut(s)	437, 521, 555
MvaI	CCWGG	3 cut(s)	437, 521, 555
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
NlaIII	CATG	1 cut(s)	865
NlaIV	GGNNCC	3 cut(s)	789, 872, 983
NsbI	TGCGCA	1 cut(s)	775
NsiI	ATGCAT	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	674
PdmI	GAANNNNTTC	3 cut(s)	429, 674, 767
PfeI	GAWTC	3 cut(s)	7, 43, 374
PflFI	GACNNNGTC	1 cut(s)	812
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	4 cut(s)	560, 941, 1001, 1018
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	787
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	3 cut(s)	435, 519, 553
PspGI	CCWGG	3 cut(s)	435, 519, 553
PspN4I	GGNNCC	3 cut(s)	789, 872, 983
PspPI	GGNCC	1 cut(s)	787
PspPPI	RGGWCCY	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	574, 656
PsyI	GACNNNGTC	1 cut(s)	812
RsaI	GTAC	5 cut(s)	72, 99, 117, 584, 1036
RsaNI	GTAC	5 cut(s)	71, 98, 116, 583, 1035
SaqAI	TTAA	3 cut(s)	293, 495, 1063
SatI	GCNGC	4 cut(s)	559, 940, 1000, 1017
Sau3AI	GATC	6 cut(s)	345, 361, 574, 616, 648, 656
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	4 cut(s)	72, 99, 117, 584
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	437, 521, 555
SduI	GDGCHC	2 cut(s)	269, 548
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	2 cut(s)	280, 559
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	1 cut(s)	787
SpeI	ACTAGT	1 cut(s)	67
Sse9I	AATT	3 cut(s)	220, 429, 496
SseBI	AGGCCT	1 cut(s)	674
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	2 cut(s)	62, 68
StuI	AGGCCT	1 cut(s)	674
StyD4I	CCNGG	3 cut(s)	435, 519, 553
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	5 cut(s)	479, 587, 683, 780, 812
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	405, 816
TasI	AATT	3 cut(s)	220, 429, 496
TatI	WGTACW	4 cut(s)	70, 97, 115, 582
TfiI	GAWTC	3 cut(s)	7, 43, 374
Tru1I	TTAA	3 cut(s)	293, 495, 1063
Tru9I	TTAA	3 cut(s)	293, 495, 1063
TscAI	CASTG	3 cut(s)	215, 626, 785
TseI	GCWGC	4 cut(s)	558, 939, 999, 1016
TspDTI	ATGAA	4 cut(s)	35, 68, 111, 849
TspRI	CASTG	3 cut(s)	215, 626, 785
Tth111I	GACNNNGTC	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	787
XagI	CCTNNNNNAGG	1 cut(s)	552
XapI	RAATTY	1 cut(s)	220
XmnI	GAANNNNTTC	3 cut(s)	429, 674, 767
XspI	CTAG	2 cut(s)	62, 68
ZrmI	AGTACT	4 cut(s)	72, 99, 117, 584
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.