Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8978230 .. 8979081

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGCAAAGTAGTACTTTCATATGTGGTATGTGTATTATGCCAAGTCATCGGGAAGACTCTTTCAACGTCAAGGGTTGCAAGTTGCAACCATTTTTATTGTCGGCACTGCATTGTGAATTTCGTAGTGTCCAAGCTCCAAGACAATGTTACATCTATTGTGTGCCCAGAAAGAGGCTGCAGAGGAGTGTTAAAACCTGAGTGCCGTCGCTCAATCCTCCCAAACGAAATCTTTGATAGCTGGATCAATGCCTTATGGGATCAAAATGGGGAATCTTCAAATATAGACAGCAATAATACTTTCGAATGTGATTTATGTGTTGAAGCAATTCACCTGGAAGACTCATTTGACATCAAGGGTTGCAATCATTTTTACTGTCGCCAATGCATTGTTAATTATTTTTTATCGTCCAAGCTCCAGGAAAATGTTGCATCCATTGCGTGCCCTGAACCAGGCTGCAGGGGAGTGTTAGATCCTGAGTACTGTCGTCCAATCCTCCCAAACGATGTGTTTGATCGGTGGGGAAAAGCTGTTGTTGAAAATCTGATCGCTGGATCTGAGACTTTGAAGGCCTTCTACTGTCCCTTCAAGGATTGCTCAGCTATGTTGATTGATGATGGTAATAAGATTATACAGAAATCAGAATGTCCATATTGTAAGAAAGTGTTCTGCGTCCCTTGGCACGCAAACATTGACTGTGTCGAGTTTCAGAAGTTGAATGAAGGTGAGAGGGAAAGGGAAGATATCATGTTGAGGAACCTTGCACAGAAGGAAAAATGGAGGAGGTGTCCAAGTTGCCAATATTATGTTGCAAAGAAAAGTGGCTGCTCATACATCAAATGCAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

283

Amino Acids

32.32

Weight (kDa)

7.31

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
AclWI	GGATC	4 cut(s)	251, 267, 467, 562
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	2 cut(s)	15, 482
AfiI	CCNNNNNNNGG	2 cut(s)	173, 452
AgsI	TTSAA	7 cut(s)	66, 279, 323, 539, 568, 589, 718
AjnI	CCWGG	3 cut(s)	333, 417, 451
AluBI	AGCT	5 cut(s)	136, 240, 415, 530, 602
AluI	AGCT	5 cut(s)	136, 240, 415, 530, 602
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	4 cut(s)	251, 267, 467, 562
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	3 cut(s)	177, 456, 825
ApoI	RAATTY	1 cut(s)	118
Asp700I	GAANNNNTTC	3 cut(s)	327, 572, 665
AsuHPI	GGTGA	2 cut(s)	323, 737
AsuII	TTCGAA	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	167, 446
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbsI	GAAGAC	2 cut(s)	62, 345
BbvI	GCAGC	3 cut(s)	164, 443, 812
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	3 cut(s)	335, 419, 453
BcoDI	GTCTC	1 cut(s)	554
BfmI	CTRYAG	2 cut(s)	178, 457
BfuAI	ACCTGC	1 cut(s)	834
BisI	GCNGC	3 cut(s)	178, 457, 826
BlpI	GCTNAGC	1 cut(s)	598
BlsI	GCNGC	3 cut(s)	179, 458, 827
BmcAI	AGTACT	2 cut(s)	15, 482
Bme1390I	CCNGG	3 cut(s)	335, 419, 453
BmiI	GGNNCC	1 cut(s)	758
BmrFI	CCNGG	3 cut(s)	335, 419, 453
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	2 cut(s)	62, 345
BpmI	CTGGAG	1 cut(s)	401
Bpu1102I	GCTNAGC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	677
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 452
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	335, 419, 453
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	173, 452
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	4 cut(s)	189, 468, 549, 612
BseRI	GAGGAG	2 cut(s)	198, 796
BseSI	GKGCMC	2 cut(s)	167, 446
BseXI	GCAGC	3 cut(s)	164, 443, 812
BshFI	GGCC	1 cut(s)	572
BslFI	GGGAC	2 cut(s)	567, 659
BslI	CCNNNNNNNGG	2 cut(s)	173, 452
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	567, 659
BsnI	GGCC	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	167, 446
Bsp143I	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
Bsp1720I	GCTNAGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	4 cut(s)	190, 469, 550, 611
BspHI	TCATGA	1 cut(s)	848
BspLI	GGNNCC	1 cut(s)	758
BspMAI	CTGCAG	2 cut(s)	182, 461
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	4 cut(s)	251, 267, 467, 562
BspT104I	TTCGAA	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
BssT1I	CCWWGG	1 cut(s)	677
Bst2UI	CCWGG	3 cut(s)	335, 419, 453
Bst4CI	ACNGT	4 cut(s)	377, 485, 581, 698
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	442, 684
BstDEI	CTNAG	4 cut(s)	198, 477, 558, 598
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	431
BstKTI	GATC	6 cut(s)	246, 262, 475, 517, 549, 557
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	3 cut(s)	335, 419, 453
BstSCI	CCNGG	3 cut(s)	333, 417, 451
BstSFI	CTRYAG	2 cut(s)	178, 457
BstSLI	GKGCMC	2 cut(s)	167, 446
BstV1I	GCAGC	3 cut(s)	164, 443, 812
BstV2I	GAAGAC	2 cut(s)	62, 345
BstX2I	RGATCY	2 cut(s)	472, 554
BstYI	RGATCY	2 cut(s)	472, 554
BsuRI	GGCC	1 cut(s)	572
BtsCI	GGATG	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	2 cut(s)	442, 684
CciI	TCATGA	1 cut(s)	848
CseI	GACGC	1 cut(s)	661
Csp6I	GTAC	2 cut(s)	14, 481
CviAII	CATG	2 cut(s)	748, 849
CviJI	RGCY	9 cut(s)	136, 177, 240, 415, 456, 530, 572, 602, 825
CviKI_1	RGCY	9 cut(s)	136, 177, 240, 415, 456, 530, 572, 602, 825
CviQI	GTAC	2 cut(s)	14, 481
DdeI	CTNAG	4 cut(s)	198, 477, 558, 598
DpnI	GATC	6 cut(s)	245, 261, 474, 516, 548, 556
DpnII	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
Eco130I	CCWWGG	1 cut(s)	677
Eco147I	AGGCCT	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	745
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoRII	CCWGG	3 cut(s)	333, 417, 451
EcoRV	GATATC	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	677
EcoT22I	ATGCAT	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	677
FaeI	CATG	2 cut(s)	751, 852
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	567, 659
FatI	CATG	2 cut(s)	747, 848
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	178, 457, 826
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	178, 457, 826
GluI	GCNGC	3 cut(s)	178, 457, 826
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	572
HgaI	GACGC	1 cut(s)	661
Hin1II	CATG	2 cut(s)	751, 852
HinfI	GANTC	3 cut(s)	58, 272, 341
HphI	GGTGA	2 cut(s)	323, 737
Hpy188I	TCNGA	4 cut(s)	546, 559, 643, 711
Hpy188III	TCNNGA	3 cut(s)	52, 476, 849
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	5 cut(s)	562, 583, 595, 716, 763
HpyCH4III	ACNGT	4 cut(s)	377, 485, 581, 698
HpyCH4IV	ACGT	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	4 cut(s)	198, 477, 558, 598
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	751, 852
Kzo9I	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
LmnI	GCTCC	2 cut(s)	141, 420
Lsp1109I	GCAGC	3 cut(s)	164, 443, 812
LweI	GCATC	1 cut(s)	440
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	6 cut(s)	245, 261, 474, 516, 548, 556
MboI	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
MboII	GAAGA	4 cut(s)	67, 267, 350, 752
MflI	RGATCY	2 cut(s)	472, 554
MhlI	GDGCHC	2 cut(s)	167, 446
MluCI	AATT	3 cut(s)	118, 327, 394
MlyI	GAGTC	2 cut(s)	52, 335
MnlI	CCTC	8 cut(s)	167, 176, 227, 506, 723, 747, 774, 777
Mph1103I	ATGCAT	1 cut(s)	389
MroXI	GAANNNNTTC	3 cut(s)	327, 572, 665
MseI	TTAA	2 cut(s)	191, 393
MspR9I	CCNGG	3 cut(s)	335, 419, 453
MvaI	CCWGG	3 cut(s)	335, 419, 453
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
NlaIII	CATG	2 cut(s)	751, 852
NlaIV	GGNNCC	1 cut(s)	758
NsiI	ATGCAT	1 cut(s)	389
NspV	TTCGAA	1 cut(s)	303
PagI	TCATGA	1 cut(s)	848
PceI	AGGCCT	1 cut(s)	572
PdmI	GAANNNNTTC	3 cut(s)	327, 572, 665
PfeI	GAWTC	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	698
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	3 cut(s)	179, 458, 827
PleI	GAGTC	2 cut(s)	52, 335
PpsI	GAGTC	2 cut(s)	52, 335
Psp6I	CCWGG	3 cut(s)	333, 417, 451
PspGI	CCWGG	3 cut(s)	333, 417, 451
PspN4I	GGNNCC	1 cut(s)	758
PstI	CTGCAG	2 cut(s)	182, 461
PsuI	RGATCY	2 cut(s)	472, 554
PsyI	GACNNNGTC	1 cut(s)	698
RsaI	GTAC	2 cut(s)	15, 482
RsaNI	GTAC	2 cut(s)	14, 481
SaqAI	TTAA	2 cut(s)	191, 393
SatI	GCNGC	3 cut(s)	178, 457, 826
Sau3AI	GATC	6 cut(s)	243, 259, 472, 514, 546, 554
ScaI	AGTACT	2 cut(s)	15, 482
SchI	GAGTC	2 cut(s)	52, 335
ScrFI	CCNGG	3 cut(s)	335, 419, 453
SduI	GDGCHC	2 cut(s)	167, 446
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	2 cut(s)	178, 457
SfuI	TTCGAA	1 cut(s)	303
Sse9I	AATT	3 cut(s)	118, 327, 394
SseBI	AGGCCT	1 cut(s)	572
SspI	AATATT	1 cut(s)	803
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	333, 417, 451
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	4 cut(s)	377, 485, 581, 698
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	303, 702
TasI	AATT	3 cut(s)	118, 327, 394
TatI	WGTACW	2 cut(s)	13, 480
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	191, 393
Tru9I	TTAA	2 cut(s)	191, 393
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	3 cut(s)	177, 456, 825
TspDTI	ATGAA	2 cut(s)	9, 735
TspRI	CASTG	1 cut(s)	113
Tth111I	GACNNNGTC	1 cut(s)	698
XagI	CCTNNNNNAGG	1 cut(s)	450
XapI	RAATTY	1 cut(s)	118
XmnI	GAANNNNTTC	3 cut(s)	327, 572, 665
ZrmI	AGTACT	2 cut(s)	15, 482
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.