Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010976.1

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

56263 .. 57331

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010976.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgtcatatctattcaggggagtattaaaccctgggcactgtcgtcatatcctccctaatgatatctatgctaggtgggttcatgccttatttgatcacaatggagaatcttcaaatcctgaaagtaatagtgctggtactgattcattcaagagtattactagaactagtactggttcattcaagagtattaccagtactgatgagcaaagtagtactttcatatgtgaaagaggctacagaggagtgttaaaacctgagtgctgtcgctcaatcctcccaaacgaaatctttgatagctggatcaatgccttatgggatcaaaatggggaatattcaaatatagacagcaataatactttcgaatgtgatttatgtgttgaagcaattcacctggaagactcatttgacatcaatggttgcaatcatttttactgtcgccactgcattgttaattattttgtatcgtccaagctccaggaaaatgttgcatccattgcgtgccctgaaccaggctgcgggggagtgttagatcctgagtactgtcatccaatcctcccaaacgatgtgtttgatcagtggggaaaagctgttgttgaaaatctgatcgctggatctgagactttgaaggccttctactgtcccttcaaggattgctcagctatgttgattgatgatggtaataagattatgcagaaatcagaatgtccatattgtaagaaagtgttctgcgcacagtgtaaggtcccttggcacgcaaacattgactgtgtcgagtttcagaagttgaatgaaggtgagagggaaagggaagatatcatgttgaggaaccttgcacagaaggaaaaatggaggaggtgtccaagttgccaatattatgttgcaaagaaaagtagctgctcatacatcaaatgtgttgacttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

308

Amino Acids

35.03

Weight (kDa)

5.41

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	733
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	4 cut(s)	311, 327, 527, 622
AfaI	GTAC	5 cut(s)	139, 172, 199, 217, 542
AfiI	CCNNNNNNNGG	2 cut(s)	512, 518
AgsI	TTSAA	9 cut(s)	114, 151, 184, 339, 383, 599, 628, 649, 790
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	4 cut(s)	31, 393, 477, 511
AluBI	AGCT	5 cut(s)	300, 475, 590, 662, 897
AluI	AGCT	5 cut(s)	300, 475, 590, 662, 897
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	4 cut(s)	311, 327, 527, 622
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	2 cut(s)	516, 897
Asp700I	GAANNNNTTC	3 cut(s)	387, 632, 725
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	745
AsuHPI	GGTGA	2 cut(s)	383, 809
AsuII	TTCGAA	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	745
BaeGI	GKGCMC	2 cut(s)	39, 506
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	503, 884
BccI	CCATC	1 cut(s)	671
BciT130I	CCWGG	4 cut(s)	33, 395, 479, 513
BclI	TGATCA	2 cut(s)	94, 574
BcoDI	GTCTC	1 cut(s)	614
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	3 cut(s)	72, 162, 168
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	517, 898
BlpI	GCTNAGC	1 cut(s)	658
BlsI	GCNGC	2 cut(s)	518, 899
BmcAI	AGTACT	4 cut(s)	172, 199, 217, 542
Bme1390I	CCNGG	4 cut(s)	33, 395, 479, 513
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	2 cut(s)	747, 830
BmrFI	CCNGG	4 cut(s)	33, 395, 479, 513
BmsI	GCATC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	658
Bpu14I	TTCGAA	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	31, 32, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 518
Bse1I	ACTGG	2 cut(s)	178, 195
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	4 cut(s)	33, 395, 479, 513
BseDI	CCNNGG	3 cut(s)	31, 32, 749
BseGI	GGATG	2 cut(s)	491, 547
BseLI	CCNNNNNNNGG	2 cut(s)	512, 518
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	4 cut(s)	249, 528, 609, 672
BseNI	ACTGG	2 cut(s)	178, 195
BseRI	GAGGAG	2 cut(s)	258, 868
BseSI	GKGCMC	2 cut(s)	39, 506
BseXI	GCAGC	2 cut(s)	503, 884
BshFI	GGCC	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	627, 731
BslI	CCNNNNNNNGG	2 cut(s)	512, 518
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	2 cut(s)	627, 731
BsnI	GGCC	1 cut(s)	632
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	39, 506
Bsp143I	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
Bsp1720I	GCTNAGC	1 cut(s)	658
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	4 cut(s)	250, 529, 610, 671
BspLI	GGNNCC	2 cut(s)	747, 830
BspPI	GGATC	4 cut(s)	311, 327, 527, 622
BspT104I	TTCGAA	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	178, 195
BssECI	CCNNGG	3 cut(s)	31, 32, 749
BssMI	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	4 cut(s)	33, 395, 479, 513
Bst4CI	ACNGT	6 cut(s)	41, 437, 545, 641, 738, 770
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	502, 756
BstDEI	CTNAG	4 cut(s)	258, 537, 618, 658
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	491, 547
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	7 cut(s)	97, 306, 322, 535, 577, 609, 617
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	4 cut(s)	33, 395, 479, 513
BstSCI	CCNGG	4 cut(s)	31, 393, 477, 511
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	2 cut(s)	39, 506
BstV1I	GCAGC	2 cut(s)	503, 884
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	532, 614
BstYI	RGATCY	2 cut(s)	532, 614
BsuRI	GGCC	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	491, 547
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	4 cut(s)	37, 442, 584, 743
Cac8I	GCNNGC	2 cut(s)	502, 756
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	745
Csp6I	GTAC	5 cut(s)	138, 171, 198, 216, 541
CviAII	CATG	2 cut(s)	83, 820
CviJI	RGCY	8 cut(s)	237, 300, 475, 516, 590, 632, 662, 897
CviKI_1	RGCY	8 cut(s)	237, 300, 475, 516, 590, 632, 662, 897
CviQI	GTAC	5 cut(s)	138, 171, 198, 216, 541
DdeI	CTNAG	4 cut(s)	258, 537, 618, 658
DpnI	GATC	7 cut(s)	96, 305, 321, 534, 576, 608, 616
DpnII	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
Eco130I	CCWWGG	1 cut(s)	749
Eco147I	AGGCCT	1 cut(s)	632
Eco32I	GATATC	2 cut(s)	64, 817
Eco47I	GGWCC	1 cut(s)	745
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	4 cut(s)	31, 393, 477, 511
EcoRV	GATATC	2 cut(s)	64, 817
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	2 cut(s)	86, 823
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FaqI	GGGAC	2 cut(s)	627, 731
FatI	CATG	2 cut(s)	82, 819
FauI	CCCGC	1 cut(s)	512
FauNDI	CATATG	1 cut(s)	224
FbaI	TGATCA	2 cut(s)	94, 574
Fnu4HI	GCNGC	2 cut(s)	517, 898
FokI	GGATG	2 cut(s)	478, 534
Fsp4HI	GCNGC	2 cut(s)	517, 898
FspBI	CTAG	3 cut(s)	72, 162, 168
FspI	TGCGCA	1 cut(s)	733
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	2 cut(s)	517, 898
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	632
HhaI	GCGC	1 cut(s)	734
Hin1II	CATG	2 cut(s)	86, 823
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HinfI	GANTC	3 cut(s)	107, 143, 401
HphI	GGTGA	2 cut(s)	383, 809
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	4 cut(s)	606, 619, 703, 783
Hpy188III	TCNNGA	4 cut(s)	119, 151, 184, 536
Hpy8I	GTNNAC	1 cut(s)	919
HpyAV	CCTTC	5 cut(s)	622, 643, 655, 788, 835
HpyCH4III	ACNGT	6 cut(s)	41, 437, 545, 641, 738, 770
HpyCH4V	TGCA	6 cut(s)	423, 447, 491, 694, 836, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	4 cut(s)	258, 537, 618, 658
Hsp92II	CATG	2 cut(s)	86, 823
HspAI	GCGC	1 cut(s)	732
Ksp22I	TGATCA	2 cut(s)	94, 574
Kzo9I	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	2 cut(s)	503, 884
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	3 cut(s)	72, 162, 168
MalI	GATC	7 cut(s)	96, 305, 321, 534, 576, 608, 616
MboI	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
MboII	GAAGA	3 cut(s)	102, 410, 824
MflI	RGATCY	2 cut(s)	532, 614
MhlI	GDGCHC	2 cut(s)	39, 506
MluCI	AATT	2 cut(s)	387, 454
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	9 cut(s)	62, 227, 236, 287, 566, 795, 819, 846, 849
MroXI	GAANNNNTTC	3 cut(s)	387, 632, 725
MseI	TTAA	3 cut(s)	26, 251, 453
MspR9I	CCNGG	4 cut(s)	33, 395, 479, 513
MvaI	CCWGG	4 cut(s)	33, 395, 479, 513
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeI	CATATG	1 cut(s)	224
NdeII	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
NlaIII	CATG	2 cut(s)	86, 823
NlaIV	GGNNCC	2 cut(s)	747, 830
NsbI	TGCGCA	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	363
PasI	CCCWGGG	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	632
PdmI	GAANNNNTTC	3 cut(s)	387, 632, 725
PfeI	GAWTC	2 cut(s)	107, 143
PflFI	GACNNNGTC	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	518, 899
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	745
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	4 cut(s)	31, 393, 477, 511
PspGI	CCWGG	4 cut(s)	31, 393, 477, 511
PspN4I	GGNNCC	2 cut(s)	747, 830
PspPI	GGNCC	1 cut(s)	745
PspPPI	RGGWCCY	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	532, 614
PsyI	GACNNNGTC	1 cut(s)	770
RsaI	GTAC	5 cut(s)	139, 172, 199, 217, 542
RsaNI	GTAC	5 cut(s)	138, 171, 198, 216, 541
SaqAI	TTAA	3 cut(s)	26, 251, 453
SatI	GCNGC	2 cut(s)	517, 898
Sau3AI	GATC	7 cut(s)	94, 303, 319, 532, 574, 606, 614
Sau96I	GGNCC	1 cut(s)	745
ScaI	AGTACT	4 cut(s)	172, 199, 217, 542
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	4 cut(s)	33, 395, 479, 513
SduI	GDGCHC	2 cut(s)	39, 506
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	1 cut(s)	745
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	2 cut(s)	387, 454
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	1 cut(s)	519
SspI	AATATT	2 cut(s)	335, 875
SspMI	CTAG	3 cut(s)	72, 162, 168
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	4 cut(s)	31, 393, 477, 511
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	6 cut(s)	41, 437, 545, 641, 738, 770
TaqI	TCGA	2 cut(s)	363, 774
TasI	AATT	2 cut(s)	387, 454
TatI	WGTACW	4 cut(s)	170, 197, 215, 540
TfiI	GAWTC	2 cut(s)	107, 143
Tru1I	TTAA	3 cut(s)	26, 251, 453
Tru9I	TTAA	3 cut(s)	26, 251, 453
TscAI	CASTG	4 cut(s)	44, 449, 584, 743
TseI	GCWGC	2 cut(s)	516, 897
TspDTI	ATGAA	5 cut(s)	71, 135, 168, 211, 807
TspRI	CASTG	4 cut(s)	44, 449, 584, 743
Tth111I	GACNNNGTC	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	745
XagI	CCTNNNNNAGG	1 cut(s)	510
XmnI	GAANNNNTTC	3 cut(s)	387, 632, 725
XspI	CTAG	3 cut(s)	72, 162, 168
ZrmI	AGTACT	4 cut(s)	172, 199, 217, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.