Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

14226093 .. 14227356

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGCAACAAACTTTGCACAGGAGAGAAGTTGGGTGGCAAAGTTTTCACAGGAAACAAACTGGGGAGCAAAGTTTTCACAGGAAAATACATAAGGGGTAAGCACTTCTCCTTCGTGACCAAACATATAGTACTGCATACAAAAACAAATACGAAGCAACATGAACGTGTTGATATTGATATTGATCCTACTTTTGTATGTGACTTGTGTGATGCGAAAAGTCATCTCGAAAACTCATTCAACATCAAGGGTTGTGCCCATTTTTACTGTCGAGAGTGCGTTGTTCAATACGTAGCATCCAATCTCCAAAACAATGTCACATCCGCTGTTATGTGCCCTGTACAAGGCTGCACTGGCGCTCTAGACCCTGACTACTGTCGTCCAATCCTCCCAGATGACGTCTTTGATGGGTGGGGCAATGCCTTATGTGAATCTACACTTGCAGATGAGAGTGGTGATATCGATTCAACTTTTGTATGTGACTTCTGTGTTGAGCCAGTTGATCTAAAAGACTCGTTTAACATTAAGGGTTGCTCCCACTTTTACTGTCAAGACTGCGTTGTGAAATTCATAGCATCCAAGCTTGATGACAATGTATCTTCCATTACATGCCCTGCACAAGGCTGCACGGGCACATTAGAACTTGACTACTGTCGTCCTATCCTCCCAACCGACCTCTTTGATAGGTGGGGCAAGGCCATATGTGAATCTGTGGTTATCGGGCCTCAGAAGAAGTACTTATACTGTCCCTTCGTCGGGTGCTCTGCGCTGTTAATCCACGAGGGGCCAGAGGATACCAATCAGGCTCCATGTCCTCATTGCAAAAGAGAGTTTTGCGCCAAGTGTAAGGTTCCTTGGCATACCGAATTCAATTGCTCCATGTTTCAGAAATTGAGAGATAAGGGCGAAGACGAGATGCTGGAAGAGCTTGCCAAGAATAAGAACTGGAGGAGGTGCCCACGTTGCAGTTTCTATGTTGAAAGAATAGATGGGTGCAGCTACATGAAATGCAGGTGCGGATTTGCTTTCTGTTACAGTTGTGGAATTCAAGCTATCGAACATACCCGTTATTGTCAAAGCTGTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

364

Amino Acids

40.83

Weight (kDa)

6.58

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	229 - 292	2.6e-11	IBR domain, a half RING-finger domain
IBR	PF01485	305 - 354	1.9e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1002
AatII	GACGTC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	1002
AccB1I	GGYRCC	1 cut(s)	954
AciI	CCGC	2 cut(s)	324, 1017
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	3 cut(s)	566, 866, 1044
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	3 cut(s)	132, 342, 737
AfiI	CCNNNNNNNGG	4 cut(s)	344, 620, 755, 756
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	6 cut(s)	241, 287, 468, 871, 980, 1049
AluBI	AGCT	5 cut(s)	583, 928, 999, 1052, 1080
AluI	AGCT	5 cut(s)	583, 928, 999, 1052, 1080
Alw21I	GWGCWC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	3 cut(s)	696, 722, 785
ApeKI	GCWGC	3 cut(s)	348, 624, 996
ApoI	RAATTY	3 cut(s)	566, 866, 1044
AspLEI	GCGC	3 cut(s)	359, 769, 839
AspS9I	GGNCC	2 cut(s)	722, 785
AsuHPI	GGTGA	1 cut(s)	467
BaeGI	GKGCMC	4 cut(s)	259, 338, 635, 959
BanI	GGYRCC	1 cut(s)	954
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BauI	CACGAG	1 cut(s)	779
BbsI	GAAGAC	1 cut(s)	915
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	3 cut(s)	335, 611, 1008
BccI	CCATC	2 cut(s)	401, 983
BciVI	GTATCC	1 cut(s)	787
BfaI	CTAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	1002
BfuI	GTATCC	1 cut(s)	787
BisI	GCNGC	3 cut(s)	349, 625, 997
BlsI	GCNGC	3 cut(s)	350, 626, 998
BmcAI	AGTACT	2 cut(s)	132, 737
BmgT120I	GGNCC	2 cut(s)	722, 785
BmiI	GGNNCC	4 cut(s)	786, 807, 852, 956
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	202, 305, 584, 906
BmuI	ACTGGG	1 cut(s)	71
BoxI	GACNNNNGTC	2 cut(s)	375, 651
BpiI	GAAGAC	1 cut(s)	915
BpmI	CTGGAG	1 cut(s)	967
Bsa29I	ATCGAT	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	2 cut(s)	183, 798
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	4 cut(s)	344, 620, 755, 756
Bse1I	ACTGG	4 cut(s)	66, 358, 497, 950
Bse3DI	GCAATG	2 cut(s)	424, 817
Bse8I	GATNNNNATC	2 cut(s)	183, 798
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	3 cut(s)	296, 320, 575
BseJI	GATNNNNATC	2 cut(s)	183, 798
BseLI	CCNNNNNNNGG	4 cut(s)	344, 620, 755, 756
BseMI	GCAATG	2 cut(s)	424, 817
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	4 cut(s)	66, 358, 497, 950
BseRI	GAGGAG	1 cut(s)	964
BseSI	GKGCMC	4 cut(s)	259, 338, 635, 959
BseXI	GCAGC	3 cut(s)	335, 611, 1008
BsgI	GTGCAG	4 cut(s)	334, 600, 610, 1015
BshFI	GGCC	3 cut(s)	698, 724, 787
BshNI	GGYRCC	1 cut(s)	954
BshVI	ATCGAT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	4 cut(s)	344, 620, 755, 756
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	698, 724, 787
Bsp1286I	GDGCHC	5 cut(s)	259, 338, 635, 764, 959
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	184, 502
BspACI	CCGC	2 cut(s)	324, 1017
BspANI	GGCC	3 cut(s)	698, 724, 787
BspCNI	CTCAG	1 cut(s)	739
BspDI	ATCGAT	1 cut(s)	462
BspLI	GGNNCC	4 cut(s)	786, 807, 852, 956
BspMI	ACCTGC	1 cut(s)	1002
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	954
BsrDI	GCAATG	2 cut(s)	424, 817
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	66, 358, 497, 950
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	2 cut(s)	184, 502
BssNI	GRCGYC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	779
Bst4CI	ACNGT	6 cut(s)	269, 377, 548, 653, 746, 1037
Bst6I	CTCTTC	1 cut(s)	918
BstACI	GRCGYC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	930
BstDEI	CTNAG	1 cut(s)	726
BstENI	CCTNNNNNAGG	2 cut(s)	342, 618
BstF5I	GGATG	3 cut(s)	296, 320, 575
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	3 cut(s)	359, 769, 839
BstKTI	GATC	2 cut(s)	187, 505
BstMBI	GATC	2 cut(s)	184, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	354, 630, 925, 963
BstNSI	RCATGY	1 cut(s)	612
BstPAI	GACNNNNGTC	2 cut(s)	375, 651
BstSLI	GKGCMC	4 cut(s)	259, 338, 635, 959
BstSNI	TACGTA	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	335, 611, 1008
BstV2I	GAAGAC	1 cut(s)	915
Bsu15I	ATCGAT	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	787
BsuRI	GGCC	3 cut(s)	698, 724, 787
BsuTUI	ATCGAT	1 cut(s)	462
BtsCI	GGATG	3 cut(s)	296, 320, 575
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	1002
Cac8I	GCNNGC	1 cut(s)	930
CfoI	GCGC	3 cut(s)	359, 769, 839
Cfr13I	GGNCC	2 cut(s)	722, 785
ClaI	ATCGAT	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	131, 341, 736
CviAII	CATG	5 cut(s)	161, 609, 810, 880, 1003
CviQI	GTAC	3 cut(s)	131, 341, 736
DdeI	CTNAG	1 cut(s)	726
DpnI	GATC	2 cut(s)	186, 504
DpnII	GATC	2 cut(s)	184, 502
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco105I	TACGTA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	2 cut(s)	342, 618
EcoRI	GAATTC	2 cut(s)	866, 1044
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	5 cut(s)	164, 612, 813, 883, 1006
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	5 cut(s)	160, 608, 809, 879, 1002
FauNDI	CATATG	1 cut(s)	701
Fnu4HI	GCNGC	3 cut(s)	349, 625, 997
FokI	GGATG	3 cut(s)	283, 307, 562
Fsp4HI	GCNGC	3 cut(s)	349, 625, 997
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	3 cut(s)	358, 768, 838
GluI	GCNGC	3 cut(s)	349, 625, 997
GsuI	CTGGAG	1 cut(s)	967
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	698, 724, 787
HhaI	GCGC	3 cut(s)	359, 769, 839
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	5 cut(s)	164, 612, 813, 883, 1006
Hin6I	GCGC	3 cut(s)	357, 767, 837
HinP1I	GCGC	3 cut(s)	357, 767, 837
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	4 cut(s)	431, 464, 512, 707
HphI	GGTGA	1 cut(s)	467
Hpy188I	TCNGA	2 cut(s)	729, 888
Hpy188III	TCNNGA	5 cut(s)	115, 227, 272, 362, 551
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	2 cut(s)	121, 760
HpyCH4III	ACNGT	6 cut(s)	269, 377, 548, 653, 746, 1037
HpyCH4IV	ACGT	4 cut(s)	166, 291, 399, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	354, 630, 925, 963
HpyF3I	CTNAG	1 cut(s)	726
HpySE526I	ACGT	4 cut(s)	166, 291, 399, 961
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	5 cut(s)	164, 612, 813, 883, 1006
HspAI	GCGC	3 cut(s)	357, 767, 837
Kzo9I	GATC	2 cut(s)	184, 502
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	4 cut(s)	66, 539, 811, 881
Lsp1109I	GCAGC	3 cut(s)	335, 611, 1008
LweI	GCATC	4 cut(s)	202, 305, 584, 906
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	4 cut(s)	166, 291, 399, 961
MaeIII	GTNAC	5 cut(s)	115, 200, 316, 479, 1031
MalI	GATC	2 cut(s)	186, 504
MboI	GATC	2 cut(s)	184, 502
MboII	GAAGA	4 cut(s)	591, 742, 920, 935
MfeI	CAATTG	1 cut(s)	871
MhlI	GDGCHC	5 cut(s)	259, 338, 635, 764, 959
MluCI	AATT	5 cut(s)	566, 866, 871, 890, 1044
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	9 cut(s)	398, 674, 686, 735, 775, 784, 825, 942, 945
MseI	TTAA	3 cut(s)	519, 525, 773
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	871
MwoI	GCNNNNNNNGC	4 cut(s)	354, 630, 925, 963
NdeI	CATATG	1 cut(s)	701
NdeII	GATC	2 cut(s)	184, 502
NlaIII	CATG	5 cut(s)	164, 612, 813, 883, 1006
NlaIV	GGNNCC	4 cut(s)	786, 807, 852, 956
NmuCI	GTSAC	4 cut(s)	115, 200, 316, 479
NspI	RCATGY	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	1002
PciSI	GCTCTTC	1 cut(s)	918
PfeI	GAWTC	3 cut(s)	431, 464, 707
PkrI	GCNGC	3 cut(s)	350, 626, 998
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	292
PshAI	GACNNNNGTC	2 cut(s)	375, 651
PspN4I	GGNNCC	4 cut(s)	786, 807, 852, 956
PspPI	GGNCC	2 cut(s)	722, 785
RsaI	GTAC	3 cut(s)	132, 342, 737
RsaNI	GTAC	3 cut(s)	131, 341, 736
RseI	CAYNNNNRTG	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	519, 525, 773
SatI	GCNGC	3 cut(s)	349, 625, 997
Sau3AI	GATC	2 cut(s)	184, 502
Sau96I	GGNCC	2 cut(s)	722, 785
ScaI	AGTACT	2 cut(s)	132, 737
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	5 cut(s)	259, 338, 635, 764, 959
SfaNI	GCATC	4 cut(s)	202, 305, 584, 906
SmiMI	CAYNNNNRTG	1 cut(s)	165
SnaBI	TACGTA	1 cut(s)	292
Sse9I	AATT	5 cut(s)	566, 866, 871, 890, 1044
SsiI	CCGC	2 cut(s)	324, 1017
SspMI	CTAG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	6 cut(s)	269, 377, 548, 653, 746, 1037
TaiI	ACGT	4 cut(s)	169, 294, 402, 964
TaqI	TCGA	4 cut(s)	228, 271, 462, 1056
TasI	AATT	5 cut(s)	566, 866, 871, 890, 1044
TatI	WGTACW	3 cut(s)	130, 340, 735
TfiI	GAWTC	3 cut(s)	431, 464, 707
Tru1I	TTAA	3 cut(s)	519, 525, 773
Tru9I	TTAA	3 cut(s)	519, 525, 773
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	4 cut(s)	115, 200, 316, 479
TseI	GCWGC	3 cut(s)	348, 624, 996
Tsp45I	GTSAC	4 cut(s)	115, 200, 316, 479
TspDTI	ATGAA	3 cut(s)	177, 559, 1019
TspRI	CASTG	1 cut(s)	358
XagI	CCTNNNNNAGG	2 cut(s)	342, 618
XapI	RAATTY	3 cut(s)	566, 866, 1044
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	612
XspI	CTAG	1 cut(s)	362
ZraI	GACGTC	1 cut(s)	400
ZrmI	AGTACT	2 cut(s)	132, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.