Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

8277157 .. 8278486

Gene Structure 1330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACAGCAATAATGCTAATACTTTTGTATGTGATTTATGTGTTGAAGCAATTCACCTGGAAGACTCATTTGACATCAAGGGTTGCAATCATTTTTACTGTCGCCAATGCATTGTTAATTTTGTATCGTCCAAGCTCCAGGAAAATGTTGCATCCATTGCGTGCCCCGAACCAGGCTGCAGGGGAGTGTTAGATATCCTAATGTCCAAGCTCCAAGACAATCTGACCTCCATTGAGTGCCCTGAACCAGGCTGCTGGGGAGTGTTAGAACCTGAGTACTGTCGTCCAATCCTCCCAAATGATGATTGCTCAGCTATGTTGATTGATGATGGTAATAAGATTATACAGAAATCAGAATGTCCATATTGTAAGAAAGTGTTCTGCGCACATTGTAAGGTCCCTTGGCACGCAAACATTGACTGTGTCGAGTTTCAGAAGTTGAATGAAGGTGCCGATTTGCTTTCTGCTACCACTGTGGAAAAGCCGCTCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

165

Amino Acids

18.23

Weight (kDa)

4.64

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	71 - 141	8.6e-08	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	487
AciI	CCGC	1 cut(s)	485
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	173, 248
AgsI	TTSAA	2 cut(s)	47, 442
AjnI	CCWGG	4 cut(s)	57, 138, 172, 247
AluBI	AGCT	3 cut(s)	136, 211, 314
AluI	AGCT	3 cut(s)	136, 211, 314
ApeKI	GCWGC	2 cut(s)	177, 252
Asp700I	GAANNNNTTC	2 cut(s)	51, 377
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	2 cut(s)	167, 242
BanI	GGYRCC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	164, 239
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	4 cut(s)	59, 140, 174, 249
BfmI	CTRYAG	1 cut(s)	178
BisI	GCNGC	3 cut(s)	178, 253, 485
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	3 cut(s)	179, 254, 486
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	4 cut(s)	59, 140, 174, 249
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	399, 451
BmrFI	CCNGG	4 cut(s)	59, 140, 174, 249
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 248
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	4 cut(s)	59, 140, 174, 249
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	173, 248
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	264, 324
BseSI	GKGCMC	2 cut(s)	167, 242
BseXI	GCAGC	2 cut(s)	164, 239
BseYI	CCCAGC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	173, 248
BsmFI	GGGAC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	167, 242
Bsp1720I	GCTNAGC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	265, 323
BspLI	GGNNCC	2 cut(s)	399, 451
BspMAI	CTGCAG	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	4 cut(s)	59, 140, 174, 249
Bst4CI	ACNGT	4 cut(s)	101, 281, 422, 475
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	163, 408
BstDEI	CTNAG	2 cut(s)	273, 310
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	4 cut(s)	59, 140, 174, 249
BstSCI	CCNGG	4 cut(s)	57, 138, 172, 247
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	2 cut(s)	167, 242
BstV1I	GCAGC	2 cut(s)	164, 239
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	163, 408
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	6 cut(s)	136, 177, 211, 252, 314, 484
CviKI_1	RGCY	6 cut(s)	136, 177, 211, 252, 314, 484
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	273, 310
Eco130I	CCWWGG	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	4 cut(s)	57, 138, 172, 247
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	401
FaiI	YATR	5 cut(s)	31, 40, 317, 344, 364
FaqI	GGGAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	178, 253, 485
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	178, 253, 485
FspI	TGCGCA	1 cut(s)	385
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	3 cut(s)	178, 253, 485
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	225, 355, 435
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	4 cut(s)	101, 281, 422, 475
HpyCH4V	TGCA	4 cut(s)	87, 111, 152, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	273, 310
HspAI	GCGC	1 cut(s)	384
LmnI	GCTCC	3 cut(s)	141, 216, 492
Lsp1109I	GCAGC	2 cut(s)	164, 239
LweI	GCATC	1 cut(s)	161
MbiI	CCGCTC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	167, 242
MluCI	AATT	2 cut(s)	51, 118
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	238, 302
Mph1103I	ATGCAT	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	51, 377
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	4 cut(s)	59, 140, 174, 249
MvaI	CCWGG	4 cut(s)	59, 140, 174, 249
MwoI	GCNNNNNNNGC	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	399, 451
NsbI	TGCGCA	1 cut(s)	385
NsiI	ATGCAT	1 cut(s)	113
PdmI	GAANNNNTTC	2 cut(s)	51, 377
PflFI	GACNNNGTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	179, 254, 486
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	4 cut(s)	57, 138, 172, 247
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	4 cut(s)	57, 138, 172, 247
PspN4I	GGNNCC	2 cut(s)	399, 451
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	3 cut(s)	178, 253, 485
Sau96I	GGNCC	1 cut(s)	397
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	4 cut(s)	59, 140, 174, 249
SduI	GDGCHC	2 cut(s)	167, 242
SetI	ASST	8 cut(s)	60, 138, 213, 230, 274, 316, 399, 451
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	397
Sse9I	AATT	2 cut(s)	51, 118
SsiI	CCGC	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	57, 138, 172, 247
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	4 cut(s)	101, 281, 422, 475
TaqI	TCGA	1 cut(s)	426
TasI	AATT	2 cut(s)	51, 118
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	177, 252
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	51, 377
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.