Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

4351197 .. 4353300

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0055900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCAAAGCCACTGCTCCCTTCAATGCTGACATCTGCTTCTCCCCTGACGCAGATCCAGTTCCACCCACATGTGATTGACATAGTCCAATACCTATATACCAATGAAGCTCCATTCACTGTCAACATCTACCTTTTTCTTAGCCTGTATGAAAATGCCTATTTCCCTTTTGAATTTGCTTTCTTTGATGGAACAAGCAAGCCCAGTAGAAATGGTGACCTGCTCTACATCAATGTGTTCGATGCAAACTTTGACACCCTAGTTTGGTCTCTAACCAAAGCTGGGTTCCCTGAAATGAAGATCATAGTTGGAGAGGTGGGTTGGCCGACTGATGGAGTTGTAAATTCCAATACCCCAAATGCCAAAAGATTTAATCAGGGAATGCTTAAACATGCCTTAAGTGGAAATGGCACTCCAGCTAGGAAAGGCATGATTGATGTCTATCTTTTTAGCCTCATTGATGAAAATGCCAAAAGCATTGCTCCTGGCTGCTTTGAGAGGCAATGGGGGCTGTTCGAGTTTGATGGGAAGCTGAAATACGAATTGGATTTGTCGGGTTCAGTGCAGAATAAGGGACTTGTAGCTGTGGAAGGTGTGGATTATATGTCCAAAAGGTGGTGTGTGCTGAATCCAGATGCTAAAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTCGTAGCCTTTCAGATTGTACTGCCTTTGGTTATGGTTCTTCTTGCAATAACCTTAGCCTGGAAAGAAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTTGTTTGGCGATGGAAACCGATAAAGATCCATCAGTAGGGGATTGCCAATTCCCAGTGATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

292

Amino Acids

32.73

Weight (kDa)

4.77

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	21 - 183	2.5e-30	Glycosyl hydrolases family 17
X8	PF07983	206 - 274	1.3e-11	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	615
AclWI	GGATC	2 cut(s)	49, 833
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	173, 343
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	70, 765
AgsI	TTSAA	2 cut(s)	24, 173
AjnI	CCWGG	2 cut(s)	484, 735
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 527, 559
AluBI	AGCT	5 cut(s)	110, 281, 419, 532, 584
AluI	AGCT	5 cut(s)	110, 281, 419, 532, 584
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	49, 833
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	2 cut(s)	173, 343
Asp700I	GAANNNNTTC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	798
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	798
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	5 cut(s)	182, 326, 518, 817, 850
BciT130I	CCWGG	2 cut(s)	486, 737
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	260, 420
BfrI	CTTAAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	486, 737
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	486, 737
BmrI	ACTGGG	2 cut(s)	198, 860
BmsI	GCATC	2 cut(s)	232, 625
BmuI	ACTGGG	2 cut(s)	198, 860
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	731
BsaBI	GATNNNNATC	2 cut(s)	441, 837
BsaI	GGTCTC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
Bse1I	ACTGG	3 cut(s)	58, 204, 866
Bse3DI	GCAATG	2 cut(s)	477, 509
Bse8I	GATNNNNATC	2 cut(s)	441, 837
BseBI	CCWGG	2 cut(s)	486, 737
BseJI	GATNNNNATC	2 cut(s)	441, 837
BseLI	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
BseMI	GCAATG	2 cut(s)	477, 509
BseNI	ACTGG	3 cut(s)	58, 204, 866
BseXI	GCAGC	1 cut(s)	476
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	54, 300, 838
BspANI	GGCC	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	287
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	49, 833
BspTI	CTTAAG	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	2 cut(s)	477, 509
BsrI	ACTGG	3 cut(s)	58, 204, 866
BssMI	GATC	3 cut(s)	54, 300, 838
Bst2UI	CCWGG	2 cut(s)	486, 737
Bst4CI	ACNGT	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	140, 731
BstEII	GGTNACC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	57, 303, 841
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	54, 300, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 755
BstNI	CCWGG	2 cut(s)	486, 737
BstNSI	RCATGY	3 cut(s)	74, 395, 769
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	484, 735
BstV1I	GCAGC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	54, 838
BstYI	RGATCY	2 cut(s)	54, 838
BsuRI	GGCC	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	836
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	4 cut(s)	11, 117, 567, 873
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	798
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	4 cut(s)	71, 392, 430, 766
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	2 cut(s)	140, 731
DpnI	GATC	3 cut(s)	56, 302, 840
DpnII	GATC	3 cut(s)	54, 300, 838
EaeI	YGGCCR	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	798
Eco91I	GGTNACC	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	484, 735
FaeI	CATG	4 cut(s)	74, 395, 433, 769
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	4 cut(s)	70, 391, 429, 765
Fnu4HI	GCNGC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	2 cut(s)	260, 420
GluI	GCNGC	1 cut(s)	490
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	325
HgaI	GACGC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	74, 395, 433, 769
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	628
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	30, 584
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	245, 565, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 755
HpyF3I	CTNAG	2 cut(s)	140, 731
Hsp92II	CATG	4 cut(s)	74, 395, 433, 769
Kzo9I	GATC	3 cut(s)	54, 300, 838
LmnI	GCTCC	3 cut(s)	21, 115, 487
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	2 cut(s)	232, 625
MaeI	CTAG	2 cut(s)	260, 420
MaeIII	GTNAC	2 cut(s)	215, 803
MalI	GATC	3 cut(s)	56, 302, 840
MboI	GATC	3 cut(s)	54, 300, 838
MboII	GAAGA	2 cut(s)	310, 708
MflI	RGATCY	2 cut(s)	54, 838
MluCI	AATT	4 cut(s)	173, 343, 542, 860
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	307, 464, 492
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	4 cut(s)	372, 387, 398, 762
MslI	CAYNNNNRTG	2 cut(s)	69, 233
MspCI	CTTAAG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	486, 737
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	486, 737
MwoI	GCNNNNNNNGC	2 cut(s)	508, 755
NdeII	GATC	3 cut(s)	54, 300, 838
NlaIII	CATG	4 cut(s)	74, 395, 433, 769
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	2 cut(s)	215, 803
NspI	RCATGY	3 cut(s)	74, 395, 769
PciI	ACATGT	2 cut(s)	70, 765
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	628
PflFI	GACNNNGTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	615
PkrI	GCNGC	1 cut(s)	491
PscI	ACATGT	2 cut(s)	70, 765
Psp6I	CCWGG	2 cut(s)	484, 735
PspEI	GGTNACC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	484, 735
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	798
PsuI	RGATCY	2 cut(s)	54, 838
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	2 cut(s)	69, 233
SaqAI	TTAA	4 cut(s)	372, 387, 398, 762
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	3 cut(s)	54, 300, 838
Sau96I	GGNCC	1 cut(s)	798
ScrFI	CCNGG	2 cut(s)	486, 737
SfaNI	GCATC	2 cut(s)	232, 625
SinI	GGWCC	1 cut(s)	798
SmiMI	CAYNNNNRTG	2 cut(s)	69, 233
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	4 cut(s)	173, 343, 542, 860
SspMI	CTAG	2 cut(s)	260, 420
StyD4I	CCNGG	2 cut(s)	484, 735
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	240, 516
TasI	AATT	4 cut(s)	173, 343, 542, 860
TatI	WGTACW	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	4 cut(s)	372, 387, 398, 762
Tru9I	TTAA	4 cut(s)	372, 387, 398, 762
TscAI	CASTG	4 cut(s)	18, 124, 567, 873
TseFI	GTSAC	2 cut(s)	215, 803
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	2 cut(s)	215, 803
TspDTI	ATGAA	4 cut(s)	120, 165, 311, 477
TspRI	CASTG	4 cut(s)	18, 124, 567, 873
Tth111I	GACNNNGTC	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	615
Vha464I	CTTAAG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	798
XapI	RAATTY	2 cut(s)	173, 343
XceI	RCATGY	3 cut(s)	74, 395, 769
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	2 cut(s)	260, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.