Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

83729830 .. 83730951

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATGAAGAACTATCACCAGATGAAAAAGGGTGCAGAACGACTCAAGGAAATCGGTGCCGTACTGCGTAGCCTCAATTCCATCTTACGTAAACTCTCACTAAGCCGGAAAATAACCAAGTCTCCGTCGCCGTTTCAGCCTCTGATGTTGGAGAACCAACCCCATCATCATCACACCGTTGATCATGATCACGATCACATGAACCCCCTAATCTTCTCCAATGGACAATCTTCCACTAGTACTAGTTTTGATATTCCCAGTAGTACTTTCATATGTGGTTTGTGTCTTAAGCCTATTCAACTCGAAGACTCATTCGACTTCAAGGGCTGTCCCCATTTTTATTGTACTCCATGCATTGTGAACTTTGTAGTCTCCAAGCTCCAAGACAATGCCGATTGGGCTCTGCAATGCCCTGTGCCAACCTGCACCGGAACACTAGACCCTGACTACTGCCGGCCAATCCTTCCGAGGCAGGTTTTTGATTCGTGGATGAATGCATTGTGTGATCAGATTGCGCAATCTTCTTATGGTGCTGAAAGCAGTAATAGTGGTACTACTTTTACATGTGATTTTTGTGTTGAGGAAAAGCATCTGAGTGACTCGTTTAGTGTCAAAGATTGCAGCCATTTTTACTGCCATCAATGCATCGTCAATTTTGTGGTGTCAAAGCTGGAGGACAATGTGACCTCCATTGTGTGCCCCGAGCCGGGCTGCAGAGGAGTGCTAGACCTGCAGTACTGTCAGCCAATTCTCCCGAAAGATGTTCTTGATTGGTGGGGGAAGGCCTTGTGTGAAAATGTGATTTTGGGGTCGGAGAACAATGACAAGTATTTCTACTGTCCCTTCAAGGATTGCTCGGCACTGCTGGTTGTTGATGATCGGGAGGATGAGCATGACATATACAAGTCTCGGTGTCCTCATTGCAAGAGAGAGGTTTGCTTGAATTGCAAGGTTCCTTGGCATACGGAGTTCAACTGCGACAAGTTTCAGAAATTGAGAGACAAGGGTGAAGATGAGATGGTGAAGGAGCTTGCCAAGAAAAAGAAGTGGAGGAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAAGAGGGGTGCACTTACATTAAATGCAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

373

Amino Acids

42.88

Weight (kDa)

6.71

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	272 - 326	1.3e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	516
Acc36I	ACCTGC	4 cut(s)	431, 463, 738, 1104
AccB1I	GGYRCC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	455
AfaI	GTAC	6 cut(s)	63, 241, 265, 346, 553, 737
AfiI	CCNNNNNNNGG	2 cut(s)	706, 707
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	299, 322, 847, 943, 973
AhlI	ACTAGT	2 cut(s)	236, 242
AluBI	AGCT	3 cut(s)	379, 670, 1030
AluI	AGCT	3 cut(s)	379, 670, 1030
Alw21I	GWGCWC	1 cut(s)	1100
Alw26I	GTCTC	4 cut(s)	126, 376, 912, 993
Alw44I	GTGCAC	1 cut(s)	1096
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	2 cut(s)	455, 783
ApaLI	GTGCAC	1 cut(s)	1096
ApeKI	GCWGC	2 cut(s)	621, 711
AspLEI	GCGC	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	8, 1019, 1033
AvaI	CYCGRG	1 cut(s)	701
BaeGI	GKGCMC	3 cut(s)	701, 1061, 1100
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	1100
BbvI	GCAGC	2 cut(s)	633, 698
BccI	CCATC	4 cut(s)	89, 171, 645, 1012
BceAI	ACGGC	2 cut(s)	44, 115
BclI	TGATCA	3 cut(s)	181, 187, 505
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	4 cut(s)	126, 376, 912, 993
BcuI	ACTAGT	2 cut(s)	236, 242
BfaI	CTAG	4 cut(s)	237, 243, 437, 725
BfmI	CTRYAG	2 cut(s)	712, 731
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	4 cut(s)	431, 463, 738, 1104
BglI	GCCNNNNNGGC	1 cut(s)	398
BisI	GCNGC	2 cut(s)	622, 712
BlsI	GCNGC	2 cut(s)	623, 713
BmcAI	AGTACT	3 cut(s)	241, 265, 737
Bme1390I	CCNGG	1 cut(s)	708
BmeT110I	CYCGRG	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	58, 954
BmrFI	CCNGG	1 cut(s)	708
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	598, 654
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	2 cut(s)	186, 192
BsaJI	CCNNGG	2 cut(s)	467, 956
BsaWI	WCCGGW	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 707
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	413, 919
Bse8I	GATNNNNATC	2 cut(s)	186, 192
BseDI	CCNNGG	2 cut(s)	467, 956
BseGI	GGATG	2 cut(s)	495, 892
BseJI	GATNNNNATC	2 cut(s)	186, 192
BseLI	CCNNNNNNNGG	2 cut(s)	706, 707
BseMI	GCAATG	2 cut(s)	413, 919
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	732
BseSI	GKGCMC	3 cut(s)	701, 1061, 1100
BseXI	GCAGC	2 cut(s)	633, 698
BsgI	GTGCAG	2 cut(s)	54, 409
BshFI	GGCC	2 cut(s)	457, 785
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	1100
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	4 cut(s)	106, 429, 454, 707
BslFI	GGGAC	2 cut(s)	315, 825
BslI	CCNNNNNNNGG	2 cut(s)	706, 707
BsmAI	GTCTC	4 cut(s)	126, 376, 912, 993
BsmFI	GGGAC	2 cut(s)	315, 825
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	457, 785
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	4 cut(s)	403, 701, 1061, 1100
Bsp143I	GATC	5 cut(s)	181, 187, 193, 505, 877
BspANI	GGCC	2 cut(s)	457, 785
BspCNI	CTCAG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	58, 954
BspMAI	CTGCAG	2 cut(s)	716, 735
BspMI	ACCTGC	4 cut(s)	431, 463, 738, 1104
BspT107I	GGYRCC	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	413, 919
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	467, 956
BssMI	GATC	5 cut(s)	181, 187, 193, 505, 877
BssT1I	CCWWGG	1 cut(s)	956
Bst4CI	ACNGT	3 cut(s)	178, 740, 839
BstAFI	CTTAAG	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	455, 1032
BstDEI	CTNAG	2 cut(s)	101, 593
BstF5I	GGATG	2 cut(s)	495, 892
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	5 cut(s)	184, 190, 196, 508, 880
BstMAI	GTCTC	4 cut(s)	126, 376, 912, 993
BstMBI	GATC	5 cut(s)	181, 187, 193, 505, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 398, 642, 730, 945, 1065
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	706
BstSFI	CTRYAG	2 cut(s)	712, 731
BstSLI	GKGCMC	3 cut(s)	701, 1061, 1100
BstSNI	TACGTA	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	633, 698
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	457, 785
BtsCI	GGATG	2 cut(s)	495, 892
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	1 cut(s)	860
BveI	ACCTGC	4 cut(s)	431, 463, 738, 1104
Cac8I	GCNNGC	2 cut(s)	455, 1032
CaiI	CAGNNNCTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	453
Csp6I	GTAC	6 cut(s)	62, 240, 264, 345, 552, 736
CviAII	CATG	5 cut(s)	185, 199, 351, 564, 893
CviQI	GTAC	6 cut(s)	62, 240, 264, 345, 552, 736
DdeI	CTNAG	2 cut(s)	101, 593
DpnI	GATC	5 cut(s)	183, 189, 195, 507, 879
DpnII	GATC	5 cut(s)	181, 187, 193, 505, 877
EaeI	YGGCCR	1 cut(s)	455
Eco105I	TACGTA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	956
Eco147I	AGGCCT	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	956
EcoT22I	ATGCAT	3 cut(s)	356, 499, 647
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	956
FaeI	CATG	5 cut(s)	188, 202, 354, 567, 896
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FaqI	GGGAC	2 cut(s)	315, 825
FatI	CATG	5 cut(s)	184, 198, 350, 563, 892
FauNDI	CATATG	1 cut(s)	272
FbaI	TGATCA	3 cut(s)	181, 187, 505
Fnu4HI	GCNGC	2 cut(s)	622, 712
FokI	GGATG	2 cut(s)	502, 899
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	622, 712
FspBI	CTAG	4 cut(s)	237, 243, 437, 725
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	2 cut(s)	622, 712
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	2 cut(s)	457, 785
HapII	CCGG	4 cut(s)	106, 429, 454, 707
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	188, 202, 354, 567, 896
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	4 cut(s)	42, 308, 482, 599
HpaII	CCGG	4 cut(s)	106, 429, 454, 707
HphI	GGTGA	3 cut(s)	8, 1019, 1033
Hpy166II	GTNNAC	3 cut(s)	92, 361, 1098
Hpy188I	TCNGA	6 cut(s)	144, 468, 510, 594, 814, 990
Hpy188III	TCNNGA	5 cut(s)	185, 191, 754, 767, 881
Hpy8I	GTNNAC	3 cut(s)	92, 361, 1098
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	473, 775, 853, 1018
HpyCH4III	ACNGT	3 cut(s)	178, 740, 839
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 398, 642, 730, 945, 1065
HpyF3I	CTNAG	2 cut(s)	101, 593
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	5 cut(s)	188, 202, 354, 567, 896
HspAI	GCGC	1 cut(s)	515
KroI	GCCGGC	1 cut(s)	453
KroNI	GCCGGC	1 cut(s)	455
Ksp22I	TGATCA	3 cut(s)	181, 187, 505
Kzo9I	GATC	5 cut(s)	181, 187, 193, 505, 877
LmnI	GCTCC	2 cut(s)	384, 1027
Lsp1109I	GCAGC	2 cut(s)	633, 698
LweI	GCATC	2 cut(s)	598, 654
MaeI	CTAG	4 cut(s)	237, 243, 437, 725
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	596, 682
MalI	GATC	5 cut(s)	183, 189, 195, 507, 879
MboI	GATC	5 cut(s)	181, 187, 193, 505, 877
MboII	GAAGA	6 cut(s)	19, 205, 222, 317, 513, 1022
MhlI	GDGCHC	4 cut(s)	403, 701, 1061, 1100
MluCI	AATT	5 cut(s)	76, 652, 747, 943, 992
MlyI	GAGTC	3 cut(s)	36, 302, 593
MmeI	TCCRAC	2 cut(s)	129, 792
Mph1103I	ATGCAT	3 cut(s)	356, 499, 647
MroNI	GCCGGC	1 cut(s)	453
MseI	TTAA	2 cut(s)	288, 1107
MslI	CAYNNNNRTG	1 cut(s)	594
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	4 cut(s)	106, 429, 454, 707
MspR9I	CCNGG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	6 cut(s)	136, 398, 642, 730, 945, 1065
NaeI	GCCGGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	272
NdeII	GATC	5 cut(s)	181, 187, 193, 505, 877
NgoMIV	GCCGGC	1 cut(s)	453
NlaIII	CATG	5 cut(s)	188, 202, 354, 567, 896
NlaIV	GGNNCC	2 cut(s)	58, 954
NmeAIII	GCCGAG	1 cut(s)	836
NmuCI	GTSAC	2 cut(s)	596, 682
NsbI	TGCGCA	1 cut(s)	516
NsiI	ATGCAT	3 cut(s)	356, 499, 647
NspI	RCATGY	1 cut(s)	567
PagI	TCATGA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	785
PciI	ACATGT	1 cut(s)	563
PctI	GAATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	623, 713
PleI	GAGTC	3 cut(s)	36, 302, 593
PpsI	GAGTC	3 cut(s)	36, 302, 593
Ppu21I	YACGTR	1 cut(s)	89
PscI	ACATGT	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	58, 954
PstI	CTGCAG	2 cut(s)	716, 735
PstNI	CAGNNNCTG	1 cut(s)	142
RsaI	GTAC	6 cut(s)	63, 241, 265, 346, 553, 737
RsaNI	GTAC	6 cut(s)	62, 240, 264, 345, 552, 736
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	288, 1107
SatI	GCNGC	2 cut(s)	622, 712
Sau3AI	GATC	5 cut(s)	181, 187, 193, 505, 877
ScaI	AGTACT	3 cut(s)	241, 265, 737
SchI	GAGTC	3 cut(s)	36, 302, 593
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	4 cut(s)	403, 701, 1061, 1100
SfaNI	GCATC	2 cut(s)	598, 654
SfcI	CTRYAG	2 cut(s)	712, 731
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	44, 287
SmoI	CTYRAG	2 cut(s)	44, 287
SnaBI	TACGTA	1 cut(s)	89
SpeI	ACTAGT	2 cut(s)	236, 242
Sse9I	AATT	5 cut(s)	76, 652, 747, 943, 992
SseBI	AGGCCT	1 cut(s)	785
SspMI	CTAG	4 cut(s)	237, 243, 437, 725
StuI	AGGCCT	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	1 cut(s)	956
TaaI	ACNGT	3 cut(s)	178, 740, 839
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	303, 315
TasI	AATT	5 cut(s)	76, 652, 747, 943, 992
TatI	WGTACW	4 cut(s)	239, 263, 344, 735
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	288, 1107
Tru9I	TTAA	2 cut(s)	288, 1107
TscAI	CASTG	1 cut(s)	867
TseFI	GTSAC	2 cut(s)	596, 682
TseI	GCWGC	2 cut(s)	621, 711
Tsp45I	GTSAC	2 cut(s)	596, 682
TspDTI	ATGAA	5 cut(s)	20, 38, 215, 259, 506
TspGWI	ACGGA	2 cut(s)	114, 980
TspRI	CASTG	1 cut(s)	867
Vha464I	CTTAAG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	1096
XceI	RCATGY	1 cut(s)	567
XspI	CTAG	4 cut(s)	237, 243, 437, 725
ZrmI	AGTACT	3 cut(s)	241, 265, 737
Zsp2I	ATGCAT	3 cut(s)	356, 499, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.