Rroxscaffold_2G00145850

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
83727160 .. 83728467
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145850.1

Sequence Viewer

Length: 1308 bp
ATGGGTATTCTTAAGAGCGTGAAAACTTTAGGAACACTGAAGGGTATGAAGAAAATTGGCAGAGAAGTGGGTAAGATCATCCCTACGAGTAGAAAAGTACACGTGGAACAAACTCTGGCTTCGGTTAACAATTTCGACCCCAAATATTATGATGATACTAAAGATCTCATGACCCCGCTACTGTCGAGCAACAAGAACGGAAAATCTTCTGATCCTGAAAGCTGTAGAAGCAATAGTTCTAGTACGAGTTCAGTAGAGAGTAGTACTAATGCTAATGATCCAAGTACTACTTTTATTTGTGATATCTGTGTTAAGCCAACTCATCTGGAAGATTCACTCGACGTTCAGGGTTGCAACCATTTTTATTGTCGGCAATGCATTGTGGATTTTGTATTGTCCAAGCTCGAAGACAATGTCACATCCATTGTATGCCCTGAAGCAGGCTGCAGAGGAGTGTTAGAACCCGAGTACTGTCGTCCAATCCTCCCAAACAATGTCTTTGATCGGTGGGTCAACGCCTTACATGATCATAATGGGCAGCCTTCTGACGCTGAAATCTACAGTAGTAGTCCTAGTACTTCTACATGTGATTTCTGTGCTGAACCAGTTCATCTGGAGGACTCATTGCACGTCAAGGGTTGCAATCATTTTTACTGTCGACAATGCATTGTTAATTTCGTATCGTCCAAGCTCGAAGACAACGTCACGTCCATTATGTGCCCTGAAGCAGGCTGCAGTGGAGTGCTAGACCCTGAGTACTGTCGTCCAATCCTTCCGAACGAGGTCTTTGATTGGTGGGAGACTGCTTTACAAAGTCAAAATGAGCATTCTTCGAATCCTGAAATCAATGATCCTAGTACTAGCAATGGCACTAGTACTTTCATTTGTGATCTCTGCGTTAAGTCATTTCCGCTTGAAGAGTCATTCAACATCAAGGGTTGCAGCCACTTTTACTGTCAGCAGTGCATAGTTAATTTCGTATCATCGAAGCTCCAAGACAATGTCACCTCCATTGAGTGCCCCGAACCAGGCTGCTGGGGAGTGCTAGACCCCGAGTACTGTCATCCAATCCTCCCAAACGACATCTACGACCAGTGGGGAAAAGCCCTATGTGAAAATGTGATCATGGGATCCGAAAGCACTATGAACTACTTCTACTGTCCCTTTGCAGATTGCTCGGCGCTGTTGATTTGTGACGAACAGAATCAGAATGAGTCTCAGTGTCCTCACTGCGAGAGAGCGGTCTGCGCCAAGTGTAAGGTTCCTTGGCATAACGAATTTAATTGTGACGAGTTTCAAAGGCTGTAA

Protein Analysis

435

Amino Acids

48.6

Weight (kDa)

4.76

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 379 - 429 3.6e-09 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1241
AccI GTMKAC 1 cut(s) 658
AciI CCGC 3 cut(s) 176, 911, 1241
AclWI GGATC 5 cut(s) 206, 272, 845, 1125, 1138
AcsI RAATTY 1 cut(s) 1277
AcuI CTGAAG 3 cut(s) 59, 456, 744
AcvI CACGTG 1 cut(s) 103
AfiI CCNNNNNNNGG 3 cut(s) 440, 728, 1028
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 2 cut(s) 100, 584
AgsI TTSAA 3 cut(s) 917, 928, 1298
AhlI ACTAGT 1 cut(s) 872
AjiI CACGTC 2 cut(s) 631, 708
AjnI CCWGG 1 cut(s) 1027
AluBI AGCT 4 cut(s) 222, 403, 691, 991
AluI AGCT 4 cut(s) 222, 403, 691, 991
Alw26I GTCTC 2 cut(s) 794, 1221
AlwI GGATC 5 cut(s) 206, 272, 845, 1125, 1138
Ama87I CYCGRG 2 cut(s) 464, 1052
ApeKI GCWGC 5 cut(s) 444, 538, 732, 942, 1032
ApoI RAATTY 1 cut(s) 1277
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 687, 719
Asp700I GAANNNNTTC 3 cut(s) 205, 606, 1151
AspLEI GCGC 2 cut(s) 1183, 1250
AsuHPI GGTGA 1 cut(s) 997
AsuII TTCGAA 1 cut(s) 833
AvaI CYCGRG 2 cut(s) 464, 1052
BaeGI GKGCMC 2 cut(s) 722, 1022
BamHI GGATCC 1 cut(s) 1130
BbrPI CACGTG 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 414, 702
BbvI GCAGC 5 cut(s) 431, 550, 719, 954, 1019
BcgI CGANNNNNNTGC 2 cut(s) 1158, 1192
BciT130I CCWGG 1 cut(s) 1029
BclI TGATCA 2 cut(s) 526, 1122
BcoDI GTCTC 2 cut(s) 794, 1221
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 7 cut(s) 240, 573, 746, 855, 861, 873, 1046
BfmI CTRYAG 4 cut(s) 223, 445, 559, 733
BfoI RGCGCY 1 cut(s) 1184
BfrI CTTAAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 163
BisI GCNGC 5 cut(s) 445, 539, 733, 943, 1033
BlsI GCNGC 5 cut(s) 446, 540, 734, 944, 1034
BmcAI AGTACT 8 cut(s) 265, 286, 470, 577, 758, 859, 877, 1058
Bme1390I CCNGG 1 cut(s) 1029
BmeT110I CYCGRG 2 cut(s) 464, 1052
BmgBI CACGTC 2 cut(s) 631, 708
BmiI GGNNCC 2 cut(s) 1132, 1263
BmrFI CCNGG 1 cut(s) 1029
BpiI GAAGAC 2 cut(s) 414, 702
BpmI CTGGAG 1 cut(s) 635
Bpu14I TTCGAA 1 cut(s) 833
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 1265
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 728, 1028
Bse1I ACTGG 2 cut(s) 605, 1093
Bse3DI GCAATG 3 cut(s) 380, 623, 871
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 1 cut(s) 1265
BseGI GGATG 3 cut(s) 78, 419, 1063
BseLI CCNNNNNNNGG 3 cut(s) 440, 728, 1028
BseMI GCAATG 3 cut(s) 380, 623, 871
BseMII CTCAG 2 cut(s) 744, 1232
BseNI ACTGG 2 cut(s) 605, 1093
BseRI GAGGAG 1 cut(s) 465
BseSI GKGCMC 2 cut(s) 722, 1022
BseXI GCAGC 5 cut(s) 431, 550, 719, 954, 1019
BseYI CCCAGC 1 cut(s) 1035
BsiHKCI CYCGRG 2 cut(s) 464, 1052
BslFI GGGAC 1 cut(s) 1146
BslI CCNNNNNNNGG 3 cut(s) 440, 728, 1028
BsmAI GTCTC 2 cut(s) 794, 1221
BsmFI GGGAC 1 cut(s) 1146
BsmI GAATGC 1 cut(s) 826
BsoBI CYCGRG 2 cut(s) 464, 1052
Bsp119I TTCGAA 1 cut(s) 833
Bsp1286I GDGCHC 2 cut(s) 722, 1022
BspACI CCGC 3 cut(s) 176, 911, 1241
BspCNI CTCAG 2 cut(s) 745, 1231
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 1132, 1263
BspMAI CTGCAG 2 cut(s) 449, 737
BspPI GGATC 5 cut(s) 206, 272, 845, 1125, 1138
BspT104I TTCGAA 1 cut(s) 833
BspTI CTTAAG 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 1241
BsrDI GCAATG 3 cut(s) 380, 623, 871
BsrI ACTGG 2 cut(s) 605, 1093
BssECI CCNNGG 1 cut(s) 1265
BssT1I CCWWGG 1 cut(s) 1265
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 8 cut(s) 183, 473, 563, 656, 761, 956, 1061, 1160
Bst6I CTCTTC 1 cut(s) 912
BstAFI CTTAAG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 442, 730
BstDEI CTNAG 2 cut(s) 753, 1218
BstENI CCTNNNNNAGG 2 cut(s) 438, 726
BstF5I GGATG 3 cut(s) 78, 419, 1063
BstH2I RGCGCY 1 cut(s) 1184
BstHHI GCGC 2 cut(s) 1183, 1250
BstMAI GTCTC 2 cut(s) 794, 1221
BstMWI GCNNNNNNNGC 2 cut(s) 228, 1247
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 1027
BstSFI CTRYAG 4 cut(s) 223, 445, 559, 733
BstSLI GKGCMC 2 cut(s) 722, 1022
BstV1I GCAGC 5 cut(s) 431, 550, 719, 954, 1019
BstV2I GAAGAC 2 cut(s) 414, 702
BstX2I RGATCY 2 cut(s) 163, 1130
BstXI CCANNNNNNTGG 1 cut(s) 1035
BstYI RGATCY 2 cut(s) 163, 1130
BtrI CACGTC 2 cut(s) 631, 708
BtsCI GGATG 3 cut(s) 78, 419, 1063
BtsI GCAGTG 3 cut(s) 742, 968, 1228
BtsIMutI CAGTG 6 cut(s) 35, 742, 968, 1100, 1226, 1228
Cac8I GCNNGC 2 cut(s) 442, 730
CciI TCATGA 1 cut(s) 168
CfoI GCGC 2 cut(s) 1183, 1250
CseI GACGC 1 cut(s) 557
CviAII CATG 4 cut(s) 169, 524, 585, 1126
DdeI CTNAG 2 cut(s) 753, 1218
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 1265
Eco32I GATATC 1 cut(s) 304
Eco57I CTGAAG 3 cut(s) 59, 456, 744
Eco72I CACGTG 1 cut(s) 103
Eco88I CYCGRG 2 cut(s) 464, 1052
EcoNI CCTNNNNNAGG 2 cut(s) 438, 726
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 1265
EcoT22I ATGCAT 2 cut(s) 380, 668
ErhI CCWWGG 1 cut(s) 1265
FaeI CATG 4 cut(s) 172, 527, 588, 1129
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 1 cut(s) 1146
FatI CATG 4 cut(s) 168, 523, 584, 1125
FauI CCCGC 1 cut(s) 183
FbaI TGATCA 2 cut(s) 526, 1122
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 445, 539, 733, 943, 1033
FokI GGATG 3 cut(s) 65, 406, 1050
Fsp4HI GCNGC 5 cut(s) 445, 539, 733, 943, 1033
FspBI CTAG 7 cut(s) 240, 573, 746, 855, 861, 873, 1046
GlaI GCGC 2 cut(s) 1182, 1249
GluI GCNGC 5 cut(s) 445, 539, 733, 943, 1033
GsaI CCCAGC 1 cut(s) 1039
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 1184
HgaI GACGC 1 cut(s) 557
HhaI GCGC 2 cut(s) 1183, 1250
Hin1II CATG 4 cut(s) 172, 527, 588, 1129
Hin6I GCGC 2 cut(s) 1181, 1248
HinP1I GCGC 2 cut(s) 1181, 1248
HincII GTYRAC 3 cut(s) 127, 514, 659
HindII GTYRAC 3 cut(s) 127, 514, 659
HinfI GANTC 6 cut(s) 332, 620, 835, 920, 1204, 1214
HpaI GTTAAC 1 cut(s) 127
HphI GGTGA 1 cut(s) 997
Hpy166II GTNNAC 4 cut(s) 100, 127, 514, 659
Hpy188I TCNGA 5 cut(s) 211, 547, 777, 1135, 1209
Hpy188III TCNNGA 5 cut(s) 169, 215, 326, 614, 839
Hpy8I GTNNAC 4 cut(s) 100, 127, 514, 659
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 34, 552, 782
HpyCH4III ACNGT 8 cut(s) 183, 473, 563, 656, 761, 956, 1061, 1160
HpyCH4IV ACGT 5 cut(s) 102, 342, 630, 702, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 1247
HpyF3I CTNAG 2 cut(s) 753, 1218
HpySE526I ACGT 5 cut(s) 102, 342, 630, 702, 707
Hsp92II CATG 4 cut(s) 172, 527, 588, 1129
HspAI GCGC 2 cut(s) 1181, 1248
Ksp22I TGATCA 2 cut(s) 526, 1122
KspAI GTTAAC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 996
Lsp1109I GCAGC 5 cut(s) 431, 550, 719, 954, 1019
MaeI CTAG 7 cut(s) 240, 573, 746, 855, 861, 873, 1046
MaeII ACGT 5 cut(s) 102, 342, 630, 702, 707
MaeIII GTNAC 5 cut(s) 415, 703, 1003, 1193, 1286
MbiI CCGCTC 1 cut(s) 1241
MboII GAAGA 7 cut(s) 61, 198, 341, 419, 707, 822, 929
MflI RGATCY 2 cut(s) 163, 1130
MhlI GDGCHC 2 cut(s) 722, 1022
MluCI AATT 6 cut(s) 54, 130, 673, 973, 1277, 1282
MlyI GAGTC 3 cut(s) 614, 929, 1223
MnlI CCTC 7 cut(s) 443, 494, 610, 775, 1018, 1082, 1236
Mph1103I ATGCAT 2 cut(s) 380, 668
MroXI GAANNNNTTC 3 cut(s) 205, 606, 1151
MseI TTAA 7 cut(s) 12, 126, 312, 672, 900, 972, 1281
MspCI CTTAAG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 2 cut(s) 228, 1247
NlaIII CATG 4 cut(s) 172, 527, 588, 1129
NlaIV GGNNCC 2 cut(s) 1132, 1263
NmeAIII GCCGAG 1 cut(s) 1157
NmuCI GTSAC 5 cut(s) 415, 703, 1003, 1193, 1286
NsiI ATGCAT 2 cut(s) 380, 668
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 833
PagI TCATGA 1 cut(s) 168
PciI ACATGT 1 cut(s) 584
PcsI WCGNNNNNNNCGW 2 cut(s) 699, 1086
PctI GAATGC 1 cut(s) 826
PdmI GAANNNNTTC 3 cut(s) 205, 606, 1151
PfeI GAWTC 3 cut(s) 332, 835, 1204
PflFI GACNNNGTC 3 cut(s) 413, 701, 1001
PkrI GCNGC 5 cut(s) 446, 540, 734, 944, 1034
PleI GAGTC 3 cut(s) 614, 928, 1222
PmaCI CACGTG 1 cut(s) 103
PmlI CACGTG 1 cut(s) 103
PpsI GAGTC 3 cut(s) 614, 928, 1222
Ppu21I YACGTR 1 cut(s) 103
PscI ACATGT 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 1027
PspCI CACGTG 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 1035
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 2 cut(s) 1132, 1263
PsrI GAACNNNNNNTAC 2 cut(s) 1139, 1171
PstI CTGCAG 2 cut(s) 449, 737
PsuI RGATCY 2 cut(s) 163, 1130
PsyI GACNNNGTC 3 cut(s) 413, 701, 1001
SalI GTCGAC 1 cut(s) 657
SaqAI TTAA 7 cut(s) 12, 126, 312, 672, 900, 972, 1281
SatI GCNGC 5 cut(s) 445, 539, 733, 943, 1033
ScaI AGTACT 8 cut(s) 265, 286, 470, 577, 758, 859, 877, 1058
SchI GAGTC 3 cut(s) 614, 929, 1223
ScrFI CCNGG 1 cut(s) 1029
SduI GDGCHC 2 cut(s) 722, 1022
SfcI CTRYAG 4 cut(s) 223, 445, 559, 733
SfuI TTCGAA 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 6 cut(s) 54, 130, 673, 973, 1277, 1282
SsiI CCGC 3 cut(s) 176, 911, 1241
SspI AATATT 1 cut(s) 146
SspMI CTAG 7 cut(s) 240, 573, 746, 855, 861, 873, 1046
StyD4I CCNGG 1 cut(s) 1027
StyI CCWWGG 1 cut(s) 1265
TaaI ACNGT 8 cut(s) 183, 473, 563, 656, 761, 956, 1061, 1160
TaiI ACGT 5 cut(s) 105, 345, 633, 705, 710
TaqI TCGA 8 cut(s) 135, 185, 339, 405, 658, 693, 833, 986
TasI AATT 6 cut(s) 54, 130, 673, 973, 1277, 1282
TatI WGTACW 9 cut(s) 97, 263, 284, 468, 575, 756, 857, 875, 1056
TfiI GAWTC 3 cut(s) 332, 835, 1204
Tru1I TTAA 7 cut(s) 12, 126, 312, 672, 900, 972, 1281
Tru9I TTAA 7 cut(s) 12, 126, 312, 672, 900, 972, 1281
TscAI CASTG 6 cut(s) 42, 742, 968, 1100, 1226, 1235
TseFI GTSAC 5 cut(s) 415, 703, 1003, 1193, 1286
TseI GCWGC 5 cut(s) 444, 538, 732, 942, 1032
Tsp45I GTSAC 5 cut(s) 415, 703, 1003, 1193, 1286
TspDTI ATGAA 4 cut(s) 62, 599, 871, 1160
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 6 cut(s) 42, 742, 968, 1100, 1226, 1235
Tth111I GACNNNGTC 3 cut(s) 413, 701, 1001
Vha464I CTTAAG 1 cut(s) 11
XagI CCTNNNNNAGG 2 cut(s) 438, 726
XapI RAATTY 1 cut(s) 1277
XceI RCATGY 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 658
XmnI GAANNNNTTC 3 cut(s) 205, 606, 1151
XspI CTAG 7 cut(s) 240, 573, 746, 855, 861, 873, 1046
ZrmI AGTACT 8 cut(s) 265, 286, 470, 577, 758, 859, 877, 1058
Zsp2I ATGCAT 2 cut(s) 380, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.