Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

5058131 .. 5059827

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGAGAGAAGAGTGTCAATCTCCTATGGATACCTTTGATACTGATACCACTATGGACCCTCCACAAGAAGCTGAAATCATTGATGCCTCAGCTAAAACTATCCTCAACTCCCCTCTCGAATCGATCAAACCTAACCCTAATTTGATCGAACCCAAAGAGGATGAGGATCACAGAATTCCCTATATTGACACCCCACAAAAAGCTGTCATCATCGGCGACGATCCTCGCTGGCGACGAGACCTCTGTGCCTGTCAAGCAACCCTAGTTGAGGATGGAGATATTAGGGTTTCTAGGGTACCCTATCCCAAAAGGCTCAAAACTTTGGAGGAGATAACTATCGTTTGTGAGTCCAAACCCTCCAGCAGTAATACTGCTACTTCTGAAGTTGGTTCTTTTGTTTGCGAAATCTGCGCCGAGCCCAAGTCTGTTCTTGATTCATTTAGGATCAAAGACTGTAGCCATGCTTACTGTTCCGACTGTGTGGTCAATTACGTGTCCTCCAAGCTTCAAAACAATGTCACCACCATTGGGTGCCCTGTTCCTGAATGCAGGGGATCCCTGGAGCCAGAGCACTGTCTGTCGATTCTCCCACCGGAGTTGTTTCTCCGGTGGGGGAAGGCCTTGTGTGAGGCTGATGACTATTGCAGGATGTTCTACTGCTCATTTAAGGATTGCAATGTTATGTTGATTGATGACAGGGTTGATGAGGTTGATCTTGTGAGGGAATTAGAGTGTCCGCATTGTTGGAGATTGTTCTGTGCTCGGTGTAGGGTTCCGTGGCATGCGAATATTGGTTGTGAGGAGTTTCAGGAGCTGAATAAGGATGAGAGGAGTGAAGAAGATGCCCCAAGTGTAGGTTCTATGCCAAAAGATCCGAGGGTTGCAAGTTCATGGAGTGTAGGTGCAGAAGAGGATTCTGCTACGGATGTGGGGATCTTGAAGCAAGAATCATGGCCACTTTTGTCCCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

326

Amino Acids

36.66

Weight (kDa)

4.58

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	2 cut(s)	298, 534
AciI	CCGC	1 cut(s)	740
AclWI	GGATC	7 cut(s)	177, 218, 455, 552, 565, 869, 944
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	271, 531, 857
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	2 cut(s)	512, 943
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AluBI	AGCT	6 cut(s)	74, 95, 206, 508, 817, 973
AluI	AGCT	6 cut(s)	74, 95, 206, 508, 817, 973
Alw21I	GWGCWC	2 cut(s)	576, 766
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	7 cut(s)	177, 218, 455, 552, 565, 869, 944
AlwNI	CAGNNNCTG	1 cut(s)	817
AoxI	GGCC	2 cut(s)	621, 956
ApoI	RAATTY	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	958
BamHI	GGATCC	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	298, 534
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	576, 766
BbvCI	CCTCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	2 cut(s)	266, 294
BfmI	CTRYAG	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	6 cut(s)	60, 300, 536, 559, 567, 777
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	76, 835
BpmI	CTGGAG	2 cut(s)	346, 584
Bpu10I	CCTNAGC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	496
BsaBI	GATNNNNATC	2 cut(s)	168, 338
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	561, 779, 878
BsaWI	WCCGGW	2 cut(s)	595, 609
BsaXI	ACNNNNNCTCC	4 cut(s)	485, 515, 889, 919
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 531, 857
Bse3DI	GCAATG	1 cut(s)	685
Bse8I	GATNNNNATC	2 cut(s)	168, 338
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	561, 779, 878
BseGI	GGATG	5 cut(s)	169, 280, 657, 832, 934
BseJI	GATNNNNATC	2 cut(s)	168, 338
BseLI	CCNNNNNNNGG	3 cut(s)	271, 531, 857
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	3 cut(s)	344, 818, 847
BseSI	GKGCMC	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	969
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	2 cut(s)	623, 958
BshNI	GGYRCC	2 cut(s)	298, 534
BshVI	ATCGAT	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	576, 766
BsiSI	CCGG	2 cut(s)	596, 610
BslFI	GGGAC	1 cut(s)	952
BslI	CCNNNNNNNGG	3 cut(s)	271, 531, 857
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	952
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	623, 958
Bso31I	GGTCTC	1 cut(s)	234
Bsp1286I	GDGCHC	4 cut(s)	423, 539, 576, 766
Bsp143I	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	2 cut(s)	623, 958
BspCNI	CTCAG	1 cut(s)	104
BspDI	ATCGAT	1 cut(s)	125
BspLI	GGNNCC	6 cut(s)	60, 300, 536, 559, 567, 777
BspPI	GGATC	7 cut(s)	177, 218, 455, 552, 565, 869, 944
BspT107I	GGYRCC	2 cut(s)	298, 534
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	561, 779, 878
BssMI	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	4 cut(s)	458, 473, 482, 578
Bst6I	CTCTTC	2 cut(s)	6, 906
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	233, 786
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	5 cut(s)	169, 280, 657, 832, 934
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	9 cut(s)	129, 150, 172, 226, 450, 560, 718, 877, 939
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 411
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	457
BstSLI	GKGCMC	1 cut(s)	539
BstX2I	RGATCY	3 cut(s)	557, 874, 936
BstYI	RGATCY	3 cut(s)	557, 874, 936
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	623, 958
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	779
BtsCI	GGATG	5 cut(s)	169, 280, 657, 832, 934
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	233, 786
CaiI	CAGNNNCTG	1 cut(s)	817
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	4 cut(s)	464, 785, 894, 954
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	9 cut(s)	128, 149, 171, 225, 449, 559, 717, 876, 938
DpnII	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	956
Eam1104I	CTCTTC	2 cut(s)	6, 906
EarI	CTCTTC	2 cut(s)	6, 906
Eco147I	AGGCCT	1 cut(s)	623
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	4 cut(s)	467, 788, 897, 957
FaiI	YATR	9 cut(s)	29, 56, 186, 465, 686, 786, 866, 895, 955
FaqI	GGGAC	1 cut(s)	952
FatI	CATG	4 cut(s)	463, 784, 893, 953
FokI	GGATG	5 cut(s)	176, 287, 664, 839, 941
FriOI	GRGCYC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	266, 294
GlaI	GCGC	1 cut(s)	415
GsaI	CCCAGC	1 cut(s)	973
GsuI	CTGGAG	2 cut(s)	346, 584
HaeIII	GGCC	2 cut(s)	623, 958
HapII	CCGG	2 cut(s)	596, 610
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	467, 788, 897, 957
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	6 cut(s)	122, 350, 437, 586, 917, 950
HpaII	CCGG	2 cut(s)	596, 610
HphI	GGTGA	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	385, 478, 879
Hpy188III	TCNNGA	5 cut(s)	119, 434, 545, 812, 940
Hpy99I	CGWCG	2 cut(s)	224, 240
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	4 cut(s)	458, 473, 482, 578
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	5 cut(s)	552, 648, 678, 887, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 411
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	467, 788, 897, 957
HspAI	GCGC	1 cut(s)	414
KpnI	GGTACC	1 cut(s)	302
Kzo9I	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
LmnI	GCTCC	2 cut(s)	565, 814
LweI	GCATC	2 cut(s)	76, 835
MaeI	CTAG	2 cut(s)	266, 294
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	9 cut(s)	128, 149, 171, 225, 449, 559, 717, 876, 938
MboI	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
MboII	GAAGA	5 cut(s)	16, 23, 851, 854, 923
MflI	RGATCY	3 cut(s)	557, 874, 936
MhlI	GDGCHC	4 cut(s)	423, 539, 576, 766
MlsI	TGGCCA	1 cut(s)	958
MluCI	AATT	4 cut(s)	142, 177, 490, 728
MluNI	TGGCCA	1 cut(s)	958
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	501, 728
Mox20I	TGGCCA	1 cut(s)	958
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	958
MspA1I	CMGCKG	1 cut(s)	973
MspI	CCGG	2 cut(s)	596, 610
MspR9I	CCNGG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	257, 411
NdeII	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
NlaIII	CATG	4 cut(s)	467, 788, 897, 957
NlaIV	GGNNCC	6 cut(s)	60, 300, 536, 559, 567, 777
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	788
PceI	AGGCCT	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	122, 437, 586, 917, 950
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	969
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	6 cut(s)	60, 300, 536, 559, 567, 777
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	817
PsuI	RGATCY	3 cut(s)	557, 874, 936
PvuII	CAGCTG	1 cut(s)	973
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	669
Sau3AI	GATC	9 cut(s)	126, 147, 169, 223, 447, 557, 715, 874, 936
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	4 cut(s)	423, 539, 576, 766
SfaNI	GCATC	2 cut(s)	76, 835
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	58
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	4 cut(s)	142, 177, 490, 728
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	1 cut(s)	740
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	2 cut(s)	266, 294
StuI	AGGCCT	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	4 cut(s)	458, 473, 482, 578
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	4 cut(s)	120, 125, 150, 584
TasI	AATT	4 cut(s)	142, 177, 490, 728
TfiI	GAWTC	5 cut(s)	122, 437, 586, 917, 950
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	581
TseFI	GTSAC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	17, 429, 882
TspGWI	ACGGA	2 cut(s)	768, 941
TspRI	CASTG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	2 cut(s)	266, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.