Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014387.1

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

9331 .. 10083

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014387.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgaatttcgtagtgtccaagctccaagacaatgttacatctattgtgtgcccagaaagaggctgcagaggagtgttaaaacctgagtgctgtcgctcaatcctcccaaacgaaatctttgatagctggatcaatgccttatgggaacaaaatggggaatcttcaaatatagacagcaataatactttcgaatgtgatttatgtgttgaagcaattcacctggaagactcatttgagatcaagggttgcaatcatttttactgtcgccaatgcattgttaattattttgtatcatccaagctccaggaaaatgttgcatccattgcgtgccctgaaccaggctgcaggggagtgttagatcctgagtactgtcgtccaatcctcccaaacgatgtgtttgatcagtggggaaaagctgttgttgaaaatctgatcgctggatctgagactttgaagaccttatactgtcccttcaaggattgctcagctatgttgattgatgatggtaataagattatacagaaatcagaatgtccatattgtaagaaagtgttctgcgcacagtgtaaggtcccttggcacgcaaacattgattgtgtcgagtttcagaagttgaatgaaggtgagagggaaagggaagatatcatgttgaggaaccttgcacagaaggaaaaatggaggaggtgtccaagttgccaatattatgttgcaaagaaaagtagctgctcatacatcgaatgtgttgacttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

250

Amino Acids

28.59

Weight (kDa)

5.08

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	559
AclWI	GGATC	3 cut(s)	137, 353, 448
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	59, 338
AgsI	TTSAA	6 cut(s)	165, 209, 425, 454, 475, 616
AjnI	CCWGG	3 cut(s)	219, 303, 337
AluBI	AGCT	6 cut(s)	22, 126, 301, 416, 488, 723
AluI	AGCT	6 cut(s)	22, 126, 301, 416, 488, 723
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	137, 353, 448
ApeKI	GCWGC	3 cut(s)	63, 342, 723
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	2 cut(s)	213, 551
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	571
AsuHPI	GGTGA	2 cut(s)	209, 635
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	2 cut(s)	53, 332
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbsI	GAAGAC	2 cut(s)	231, 461
BbvI	GCAGC	3 cut(s)	50, 329, 710
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	3 cut(s)	221, 305, 339
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	64, 343
BisI	GCNGC	3 cut(s)	64, 343, 724
BlpI	GCTNAGC	1 cut(s)	484
BlsI	GCNGC	3 cut(s)	65, 344, 725
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	3 cut(s)	221, 305, 339
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	2 cut(s)	573, 656
BmrFI	CCNGG	3 cut(s)	221, 305, 339
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	231, 461
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	484
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 338
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	3 cut(s)	221, 305, 339
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	2 cut(s)	293, 317
BseLI	CCNNNNNNNGG	2 cut(s)	59, 338
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	75, 354, 435, 498
BseRI	GAGGAG	2 cut(s)	84, 694
BseSI	GKGCMC	2 cut(s)	53, 332
BseXI	GCAGC	3 cut(s)	50, 329, 710
BslFI	GGGAC	2 cut(s)	453, 557
BslI	CCNNNNNNNGG	2 cut(s)	59, 338
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	2 cut(s)	453, 557
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	53, 332
Bsp143I	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
Bsp1720I	GCTNAGC	1 cut(s)	484
BspCNI	CTCAG	4 cut(s)	76, 355, 436, 497
BspLI	GGNNCC	2 cut(s)	573, 656
BspMAI	CTGCAG	2 cut(s)	68, 347
BspPI	GGATC	3 cut(s)	137, 353, 448
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	3 cut(s)	221, 305, 339
Bst4CI	ACNGT	4 cut(s)	263, 371, 467, 564
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	328, 582
BstDEI	CTNAG	4 cut(s)	84, 363, 444, 484
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	293, 317
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	6 cut(s)	132, 240, 361, 403, 435, 443
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	3 cut(s)	221, 305, 339
BstSCI	CCNGG	3 cut(s)	219, 303, 337
BstSFI	CTRYAG	2 cut(s)	64, 343
BstSLI	GKGCMC	2 cut(s)	53, 332
BstV1I	GCAGC	3 cut(s)	50, 329, 710
BstV2I	GAAGAC	2 cut(s)	231, 461
BstX2I	RGATCY	2 cut(s)	358, 440
BstYI	RGATCY	2 cut(s)	358, 440
BtsCI	GGATG	2 cut(s)	293, 317
BtsIMutI	CAGTG	2 cut(s)	410, 569
Cac8I	GCNNGC	2 cut(s)	328, 582
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	571
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	1 cut(s)	646
CviJI	RGCY	8 cut(s)	22, 63, 126, 301, 342, 416, 488, 723
CviKI_1	RGCY	8 cut(s)	22, 63, 126, 301, 342, 416, 488, 723
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	4 cut(s)	84, 363, 444, 484
DpnI	GATC	6 cut(s)	131, 239, 360, 402, 434, 442
DpnII	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
Eco130I	CCWWGG	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	571
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	3 cut(s)	219, 303, 337
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	1 cut(s)	649
FaqI	GGGAC	2 cut(s)	453, 557
FatI	CATG	1 cut(s)	645
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	64, 343, 724
FokI	GGATG	2 cut(s)	280, 304
Fsp4HI	GCNGC	3 cut(s)	64, 343, 724
FspI	TGCGCA	1 cut(s)	559
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	3 cut(s)	64, 343, 724
GsuI	CTGGAG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	649
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	2 cut(s)	158, 227
HphI	GGTGA	2 cut(s)	209, 635
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	4 cut(s)	432, 445, 529, 609
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	3 cut(s)	481, 614, 661
HpyCH4III	ACNGT	4 cut(s)	263, 371, 467, 564
HpyCH4V	TGCA	7 cut(s)	66, 249, 273, 317, 345, 662, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	4 cut(s)	84, 363, 444, 484
Hsp92II	CATG	1 cut(s)	649
HspAI	GCGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
LmnI	GCTCC	2 cut(s)	27, 306
Lsp1109I	GCAGC	3 cut(s)	50, 329, 710
LweI	GCATC	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	6 cut(s)	131, 239, 360, 402, 434, 442
MboI	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
MboII	GAAGA	4 cut(s)	153, 236, 466, 650
MflI	RGATCY	2 cut(s)	358, 440
MhlI	GDGCHC	2 cut(s)	53, 332
MluCI	AATT	3 cut(s)	4, 213, 280
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	8 cut(s)	53, 62, 113, 392, 621, 645, 672, 675
Mph1103I	ATGCAT	1 cut(s)	275
MroXI	GAANNNNTTC	2 cut(s)	213, 551
MseI	TTAA	2 cut(s)	77, 279
MspR9I	CCNGG	3 cut(s)	221, 305, 339
MvaI	CCWGG	3 cut(s)	221, 305, 339
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	2 cut(s)	573, 656
NsbI	TGCGCA	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	213, 551
PfeI	GAWTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	65, 344, 725
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	3 cut(s)	219, 303, 337
PspGI	CCWGG	3 cut(s)	219, 303, 337
PspN4I	GGNNCC	2 cut(s)	573, 656
PspPI	GGNCC	1 cut(s)	571
PspPPI	RGGWCCY	1 cut(s)	571
PstI	CTGCAG	2 cut(s)	68, 347
PsuI	RGATCY	2 cut(s)	358, 440
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	77, 279
SatI	GCNGC	3 cut(s)	64, 343, 724
Sau3AI	GATC	6 cut(s)	129, 237, 358, 400, 432, 440
Sau96I	GGNCC	1 cut(s)	571
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	221, 305, 339
SduI	GDGCHC	2 cut(s)	53, 332
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	2 cut(s)	64, 343
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	571
Sse9I	AATT	3 cut(s)	4, 213, 280
SspI	AATATT	1 cut(s)	701
StyD4I	CCNGG	3 cut(s)	219, 303, 337
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	4 cut(s)	263, 371, 467, 564
TaqI	TCGA	3 cut(s)	189, 600, 735
TasI	AATT	3 cut(s)	4, 213, 280
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	77, 279
Tru9I	TTAA	2 cut(s)	77, 279
TscAI	CASTG	2 cut(s)	410, 569
TseI	GCWGC	3 cut(s)	63, 342, 723
TspDTI	ATGAA	2 cut(s)	17, 633
TspRI	CASTG	2 cut(s)	410, 569
VpaK11BI	GGWCC	1 cut(s)	571
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	4
XmnI	GAANNNNTTC	2 cut(s)	213, 551
ZrmI	AGTACT	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.