Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

5689164 .. 5689531

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGGATCCGGAGGTGTAAGGTTCCTTGGCATACCGAATTTGATTGTGCCAATTTTCAGAAACTGGGAAAGAAGGGTGAAGACAAGATGCTGGAAAAGCTTGCCAAGAAGAAGAGGTGGAGGAGGTGTCCAAATTGCAAGTACTATGTTGAAAGAAAATCTGGGTGCAGCCACATGAAATGCAGGTCAGTTTTGTACTTCTCTGCAGCTTCTTTCTTCTTCTTCTCCTTTTTTTTTTTTTTTGTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTCAGATTGATTAATTTTCTAAGGGGCTGTTTTGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

106

Amino Acids

13.02

Weight (kDa)

9.92

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	9
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	2 cut(s)	143, 197
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	2 cut(s)	100, 209
AluI	AGCT	2 cut(s)	100, 209
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	168, 206
ApoI	RAATTY	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	180, 218
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	169, 207
BlsI	GCNGC	2 cut(s)	170, 208
BmcAI	AGTACT	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	8, 24
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	180, 218
BsgI	GTGCAG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	6
BspEI	TCCGGA	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	8, 24
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	180, 218
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	142, 196
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	4 cut(s)	100, 171, 209, 303
CviKI_1	RGCY	4 cut(s)	100, 171, 209, 303
CviQI	GTAC	2 cut(s)	142, 196
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	33, 147, 176, 316
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	169, 207
Fsp4HI	GCNGC	2 cut(s)	169, 207
GluI	GCNGC	2 cut(s)	169, 207
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	98
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	60, 281
Hpy188III	TCNNGA	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	138, 168, 183, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	5 cut(s)	23, 50, 77, 147, 169
Lsp1109I	GCAGC	2 cut(s)	180, 218
LweI	GCATC	1 cut(s)	78
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	6 cut(s)	92, 121, 124, 208, 211, 214
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	4 cut(s)	38, 52, 133, 289
MnlI	CCTC	4 cut(s)	6, 108, 114, 117
MroI	TCCGGA	1 cut(s)	9
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	8, 24
PkrI	GCNGC	2 cut(s)	170, 208
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	8, 24
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	143, 197
RsaNI	GTAC	2 cut(s)	142, 196
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	169, 207
Sau3AI	GATC	1 cut(s)	6
ScaI	AGTACT	1 cut(s)	143
SetI	ASST	7 cut(s)	17, 24, 102, 119, 128, 188, 211
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	38, 52, 133, 289
StyI	CCWWGG	1 cut(s)	26
TasI	AATT	4 cut(s)	38, 52, 133, 289
TatI	WGTACW	2 cut(s)	141, 195
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	2 cut(s)	168, 206
TspDTI	ATGAA	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.