Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

8957895 .. 8959546

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47094

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGAGAGAAGAGTGTCAATCTCCTATAGAAACCATCCTCAACCTTAATTTGATCGAACCTAAAGAGGAGGACACTATTCCCACCCATGTTCCCTATATTGACACCCCACAAGAAGCTGTGATAATCGGCGACGATCCTCGCTGGCGACGAAATCACTGTGCTTGTGAAGCAAACCAAGTTGGGGATGGAGAAATTAGGGTTTCTAGGGCACCCAAAAGGCTCAAAACTTTGGATGAAATTAGGGTTTGTAAATCCAAACCCTCCAGCAGTAATAATGCTACTGCTGAAGTTGGTTCTTTTGTTTGCGAAATCTGCGTCGAGCCCAAGTCTGTTCTTGATTCATTTGGGATCAAAAACTGTAGCCATGCTTACTGTTCCGACTGTGTGATCAGTTACGTGTCCTCCAAGCTTCAGGACAATGTCACCACCATTGGGTGCCCTGTTCCTGACTGCAGGGGATCCCTGGAGCCAGAGCACTGTCTTTCAATTCTCCCGCCGGAGTTGTTTCTCCGGTGGGGGAAGGCCTTGTGTGAGGCTGTGTTTGCGGATTCGGATGAATATTGCAGGATCCTCTACTGTCCGTTTAAGGATTGCTCGGCAATGTTGATTGAGGATGGGGTTGAAGAGGTTGATCTTGTGAGGGAATCGGAGTGCCCACACTGCTGGAGGTTGTTCTGTGCTCGGTGTAGGGTTCCGTGGCACGCGGATATCGATTGTGAGGAGTTTCAGGAGCTGAATAAGGATGAGAGGAGGAAAGAAGACTTCATGTTGATACAGCTTGCCAAGGATAAAAAGTGGAGAAGATGCCCCAAGTGTAGGTTCTATGTCGAACGATCGGAGGGTTGTAAGTTCATGAAGTGTAGGTGCAGAACAGCATTCTGCTACAGATGTGGGAGAATTTTAAGCAAGAATCATGGCCACTTTTGTCCCAGCTGTGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

315

Amino Acids

36.16

Weight (kDa)

5.85

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	190 - 240	5.3e-08	IBR domain, a half RING-finger domain
IBR	PF01485	254 - 301	7.1e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 438
AccII	CGCG	1 cut(s)	707
AciI	CCGC	3 cut(s)	497, 548, 707
AclWI	GGATC	6 cut(s)	131, 359, 456, 469, 565, 578
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	1 cut(s)	900
AcuI	CTGAAG	2 cut(s)	309, 398
AfiI	CCNNNNNNNGG	3 cut(s)	184, 435, 819
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	489, 626
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AluBI	AGCT	5 cut(s)	119, 412, 736, 781, 936
AluI	AGCT	5 cut(s)	119, 412, 736, 781, 936
Alw21I	GWGCWC	2 cut(s)	480, 685
AlwI	GGATC	6 cut(s)	131, 359, 456, 469, 565, 578
AlwNI	CAGNNNCTG	1 cut(s)	736
AoxI	GGCC	2 cut(s)	525, 919
ApoI	RAATTY	1 cut(s)	900
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AsuHPI	GGTGA	1 cut(s)	418
BaeGI	GKGCMC	3 cut(s)	214, 443, 659
BalI	TGGCCA	1 cut(s)	921
BamHI	GGATCC	2 cut(s)	461, 570
BanI	GGYRCC	2 cut(s)	211, 438
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	2 cut(s)	480, 685
BccI	CCATC	3 cut(s)	44, 182, 611
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	1 cut(s)	390
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	4 cut(s)	27, 361, 454, 886
Bme1390I	CCNGG	1 cut(s)	467
BmiI	GGNNCC	6 cut(s)	213, 440, 463, 471, 572, 696
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	768
BpmI	CTGGAG	3 cut(s)	250, 488, 688
Bsa29I	ATCGAT	1 cut(s)	714
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	3 cut(s)	465, 698, 786
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 435, 819
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	467
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	3 cut(s)	465, 698, 786
BseGI	GGATG	6 cut(s)	36, 193, 241, 562, 622, 751
BseLI	CCNNNNNNNGG	3 cut(s)	184, 435, 819
BseMI	GCAATG	1 cut(s)	609
BseRI	GAGGAG	3 cut(s)	83, 737, 766
BseSI	GKGCMC	3 cut(s)	214, 443, 659
BseYI	CCCAGC	1 cut(s)	932
BsgI	GTGCAG	1 cut(s)	889
Bsh1236I	CGCG	1 cut(s)	707
Bsh1285I	CGRYCG	1 cut(s)	839
BshFI	GGCC	2 cut(s)	527, 921
BshNI	GGYRCC	2 cut(s)	211, 438
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	839
BsiHKAI	GWGCWC	2 cut(s)	480, 685
BsiSI	CCGG	2 cut(s)	500, 514
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	3 cut(s)	184, 435, 819
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	1 cut(s)	878
BsnI	GGCC	2 cut(s)	527, 921
Bsp1286I	GDGCHC	6 cut(s)	214, 327, 443, 480, 659, 685
Bsp143I	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
BspACI	CCGC	3 cut(s)	497, 548, 707
BspANI	GGCC	2 cut(s)	527, 921
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	6 cut(s)	213, 440, 463, 471, 572, 696
BspMAI	CTGCAG	1 cut(s)	458
BspPI	GGATC	6 cut(s)	131, 359, 456, 469, 565, 578
BspT107I	GGYRCC	2 cut(s)	211, 438
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	3 cut(s)	465, 698, 786
BssMI	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	6 cut(s)	161, 362, 377, 386, 482, 581
Bst6I	CTCTTC	2 cut(s)	6, 621
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	146, 705, 783
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	6 cut(s)	36, 193, 241, 562, 622, 751
BstFNI	CGCG	1 cut(s)	707
BstKTI	GATC	8 cut(s)	57, 139, 354, 393, 464, 573, 637, 839
BstMBI	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
BstMCI	CGRYCG	1 cut(s)	839
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 315, 545, 663
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	4 cut(s)	27, 361, 454, 886
BstSLI	GKGCMC	3 cut(s)	214, 443, 659
BstUI	CGCG	1 cut(s)	707
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	2 cut(s)	461, 570
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	2 cut(s)	461, 570
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	2 cut(s)	527, 921
BsuTUI	ATCGAT	1 cut(s)	714
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	6 cut(s)	36, 193, 241, 562, 622, 751
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	157, 478, 661
Cac8I	GCNNGC	3 cut(s)	146, 705, 783
CaiI	CAGNNNCTG	1 cut(s)	736
CciI	TCATGA	1 cut(s)	855
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	1 cut(s)	307
CviAII	CATG	5 cut(s)	89, 368, 769, 856, 917
DpnI	GATC	8 cut(s)	56, 138, 353, 392, 463, 572, 636, 838
DpnII	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
EaeI	YGGCCR	1 cut(s)	919
Eam1104I	CTCTTC	2 cut(s)	6, 621
EarI	CTCTTC	2 cut(s)	6, 621
Eco130I	CCWWGG	1 cut(s)	786
Eco147I	AGGCCT	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	309, 398
EcoRII	CCWGG	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	5 cut(s)	92, 371, 772, 859, 920
FaiI	YATR	8 cut(s)	29, 90, 99, 369, 770, 828, 857, 918
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	5 cut(s)	88, 367, 768, 855, 916
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	390
FokI	GGATG	6 cut(s)	23, 200, 248, 569, 629, 758
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	3 cut(s)	250, 488, 688
HaeIII	GGCC	2 cut(s)	527, 921
HapII	CCGG	2 cut(s)	500, 514
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	5 cut(s)	92, 371, 772, 859, 920
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	4 cut(s)	341, 551, 647, 913
HpaII	CCGG	2 cut(s)	500, 514
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	382, 556, 652, 841
Hpy188III	TCNNGA	5 cut(s)	338, 416, 449, 731, 856
Hpy99I	CGWCG	3 cut(s)	137, 153, 323
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	6 cut(s)	161, 362, 377, 386, 482, 581
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	456, 567, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 315, 545, 663
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	5 cut(s)	92, 371, 772, 859, 920
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
LmnI	GCTCC	2 cut(s)	469, 733
LweI	GCATC	1 cut(s)	797
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	395, 424
MalI	GATC	8 cut(s)	56, 138, 353, 392, 463, 572, 636, 838
MboI	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
MboII	GAAGA	5 cut(s)	16, 23, 638, 773, 816
MflI	RGATCY	2 cut(s)	461, 570
MhlI	GDGCHC	6 cut(s)	214, 327, 443, 480, 659, 685
MlsI	TGGCCA	1 cut(s)	921
MluCI	AATT	5 cut(s)	49, 195, 240, 489, 900
MluNI	TGGCCA	1 cut(s)	921
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	921
MseI	TTAA	3 cut(s)	48, 588, 905
Msp20I	TGGCCA	1 cut(s)	921
MspA1I	CMGCKG	1 cut(s)	936
MspI	CCGG	2 cut(s)	500, 514
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	878
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	4 cut(s)	170, 315, 545, 663
NdeII	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
NlaIII	CATG	5 cut(s)	92, 371, 772, 859, 920
NlaIV	GGNNCC	6 cut(s)	213, 440, 463, 471, 572, 696
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	424
PagI	TCATGA	1 cut(s)	855
PceI	AGGCCT	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	148, 711
PctI	GAATGC	1 cut(s)	878
PfeI	GAWTC	4 cut(s)	341, 551, 647, 913
PflFI	GACNNNGTC	1 cut(s)	422
Ple19I	CGATCG	1 cut(s)	839
Ppu21I	YACGTR	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	6 cut(s)	213, 440, 463, 471, 572, 696
PstI	CTGCAG	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	461, 570
PsyI	GACNNNGTC	1 cut(s)	422
PvuI	CGATCG	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	936
SaqAI	TTAA	3 cut(s)	48, 588, 905
Sau3AI	GATC	8 cut(s)	54, 136, 351, 390, 461, 570, 634, 836
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	6 cut(s)	214, 327, 443, 480, 659, 685
SfaNI	GCATC	1 cut(s)	797
SfcI	CTRYAG	4 cut(s)	27, 361, 454, 886
Sse9I	AATT	5 cut(s)	49, 195, 240, 489, 900
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	3 cut(s)	497, 548, 707
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	6 cut(s)	161, 362, 377, 386, 482, 581
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	57, 321, 714, 831
TasI	AATT	5 cut(s)	49, 195, 240, 489, 900
TfiI	GAWTC	4 cut(s)	341, 551, 647, 913
Tru1I	TTAA	3 cut(s)	48, 588, 905
Tru9I	TTAA	3 cut(s)	48, 588, 905
TscAI	CASTG	3 cut(s)	164, 485, 668
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	7 cut(s)	17, 252, 333, 573, 757, 844, 872
TspGWI	ACGGA	2 cut(s)	573, 687
TspRI	CASTG	3 cut(s)	164, 485, 668
Tth111I	GACNNNGTC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.