Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Reverse (-)

4302169 .. 4302786

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0055500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCATTTAACTTCAACAGTCACTTGGAAGAGGACTTAATGGGCAATGAACTGCTCAGATGTGGTGCAATAGCATCCCATGAAGGAAACACATGGGCCGCAAGCGAAAACTTCCCTCTATTTCAGGAAGGTGAAATAACTGCCATCATGAACGAATTCGAGCGACCTGGAACTCATGCCACCTTATTCATTGGAGGGACTAGCTACAACGTGGTCCAAGGTATTGACGGTTCTGTCATTCGTGCAAGGCTGGAGGGGGCGAATAATGATACTGGAATAACCATAATGAAGACGAGGGCTGCCCTCGTGATTGGGATCTATGATAGATCTCCTGTTGAGTGCAGCACTATCGTCGAAAGTTTGGGAAATCACTTCATAGCTTACCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

130

Amino Acids

14.18

Weight (kDa)

4.69

Isoelectric Point (pI)

23.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	6 - 127	7.2e-20	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	204, 380
AluI	AGCT	2 cut(s)	204, 380
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	299, 342
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	96, 214
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	286, 354
BccI	CCATC	1 cut(s)	152
BcgI	CGANNNNNNTGC	4 cut(s)	331, 334, 365, 368
BciT130I	CCWGG	1 cut(s)	168
BfaI	CTAG	1 cut(s)	201
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	3 cut(s)	99, 300, 343
BlsI	GCNGC	3 cut(s)	100, 301, 344
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	96, 214
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	74
BseJI	GATNNNNATC	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	286, 354
BsgI	GTGCAG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	315, 326
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	147
BspPI	GGATC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	315, 326
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	20, 230
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	318, 329
BstMBI	GATC	2 cut(s)	315, 326
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	286, 354
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	315, 326
BstYI	RGATCY	2 cut(s)	315, 326
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	96, 214
CviAII	CATG	4 cut(s)	80, 93, 148, 176
CviJI	RGCY	5 cut(s)	98, 204, 250, 299, 380
CviKI_1	RGCY	5 cut(s)	98, 204, 250, 299, 380
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	317, 328
DpnII	GATC	2 cut(s)	315, 326
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	4 cut(s)	83, 96, 151, 179
FaiI	YATR	7 cut(s)	81, 94, 149, 177, 284, 321, 377
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	4 cut(s)	79, 92, 147, 175
Fnu4HI	GCNGC	3 cut(s)	99, 300, 343
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	99, 300, 343
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	99, 300, 343
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	83, 96, 151, 179
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	3 cut(s)	125, 148, 307
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	77, 122
HpyCH4III	ACNGT	2 cut(s)	20, 230
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	68, 245, 342
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	83, 96, 151, 179
Kzo9I	GATC	2 cut(s)	315, 326
LpnPI	CCDG	6 cut(s)	110, 153, 180, 236, 258, 345
Lsp1109I	GCAGC	2 cut(s)	286, 354
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	317, 328
MboI	GATC	2 cut(s)	315, 326
MboII	GAAGA	2 cut(s)	41, 301
MflI	RGATCY	2 cut(s)	315, 326
MluCI	AATT	1 cut(s)	155
MnlI	CCTC	6 cut(s)	25, 126, 188, 247, 288, 314
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	3 cut(s)	9, 38, 391
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	315, 326
NlaIII	CATG	4 cut(s)	83, 96, 151, 179
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	100, 301, 344
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	96, 214
PsrI	GAACNNNNNNTAC	2 cut(s)	214, 246
PsuI	RGATCY	2 cut(s)	315, 326
SaqAI	TTAA	3 cut(s)	9, 38, 391
SatI	GCNGC	3 cut(s)	99, 300, 343
Sau3AI	GATC	2 cut(s)	315, 326
Sau96I	GGNCC	2 cut(s)	96, 214
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	7 cut(s)	133, 169, 185, 206, 213, 223, 382
SfaNI	GCATC	1 cut(s)	83
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	20, 230
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	159, 354
TasI	AATT	1 cut(s)	155
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	9, 38, 391
Tru9I	TTAA	3 cut(s)	9, 38, 391
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	299, 342
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	6 cut(s)	63, 96, 164, 178, 302, 364
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.