Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

9182283 .. 9183922

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTCGTCGCTTGTTTCTCGTTGCCAAGTTATAGCATTATTGGTCTTGTTCTTTTTCGGGGTGTGTCTTGCCGGTAAAGACATTCCGGCGAATTTTGTGTTCGGAGATTCATTGGTGGAAGTCGGAAACAACAACTACTTAGCCACATTGGCAAAGGCTAATAATTTTCCTAATGGGATCGATTTTGGATCACCTACTGGTCGATTCACCAACGGAAGAACAATCGTCGATATCATATATCAAGCATTAGGTTCCGACGAATTAACTCCACCGTACTTAGCACCAACGACACGCGGACCCCTAATTCTCAACGGCGCCAATTATGCCCCCGGTGGCAGTGGACCCCTCAATTCCCCCGGATCAACGAATTTAGATTCGTGGAGCCCTGAGCAGCTTAAGGCAATGATGTTTGGTGTAAATTACCTTGCTCCGGTGTTCTTCAAGAAAATGGATGGACAGACGATCGCAATATCGAGTCTAAGTACACTTTCAAGAGCTGCTAATCTGTATAGGCAGATTCTTGCTAAAGAAGTTGCTAAAGCCATTGCACAAGATACTACCACTGATCTACCAAAAGCATCTCATGGGGTTTCTTCTTCTTCTGTCAAGGAAGAGTTACGTCCCAAAGAAACTTATTTCTGTGACTTTTATGGTCGACCCATAGTTTACCCCATACTTACCAGTGCTCGAAGAGTTACATGGGCTCGAAAAATCAATTATGATATAAACAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

245

Amino Acids

26.59

Weight (kDa)

8.93

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	655
AccII	CGCG	1 cut(s)	294
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	3 cut(s)	185, 196, 367
AcsI	RAATTY	2 cut(s)	91, 367
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	275, 484
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	2 cut(s)	442, 492
AluBI	AGCT	2 cut(s)	394, 497
AluI	AGCT	2 cut(s)	394, 497
Alw21I	GWGCWC	1 cut(s)	688
AlwI	GGATC	3 cut(s)	185, 196, 367
ApeKI	GCWGC	2 cut(s)	391, 497
ApoI	RAATTY	2 cut(s)	91, 367
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	296, 341
AsuC2I	CCSGG	2 cut(s)	330, 357
AsuHPI	GGTGA	2 cut(s)	183, 199
AvaII	GGWCC	2 cut(s)	296, 341
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	386, 706
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	403, 484
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	330, 357
BfoI	RGCGCY	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	392, 498
BlsI	GCNGC	2 cut(s)	393, 499
Bme1390I	CCNGG	2 cut(s)	330, 357
Bme18I	GGWCC	2 cut(s)	296, 341
BmgT120I	GGNCC	2 cut(s)	296, 341
BmiI	GGNNCC	5 cut(s)	253, 298, 316, 343, 383
BmrFI	CCNGG	2 cut(s)	330, 357
BmsI	GCATC	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	387
BpuMI	CCSGG	2 cut(s)	330, 357
Bsa29I	ATCGAT	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	328, 355
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	202, 681
Bse3DI	GCAATG	2 cut(s)	408, 543
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	328, 355
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	2 cut(s)	408, 543
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	202, 681
BseXI	GCAGC	2 cut(s)	403, 484
Bsh1236I	CGCG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	5 cut(s)	72, 86, 330, 357, 431
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	386, 688, 706
Bsp143I	GATC	5 cut(s)	177, 188, 359, 462, 565
BspACI	CCGC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	5 cut(s)	253, 298, 316, 343, 383
BspPI	GGATC	3 cut(s)	185, 196, 367
BspT107I	GGYRCC	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	408, 543
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	202, 681
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	328, 355
BssMI	GATC	5 cut(s)	177, 188, 359, 462, 565
BssNI	GRCGYC	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	606, 685
BstACI	GRCGYC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	395
BstDEI	CTNAG	4 cut(s)	139, 277, 387, 479
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	294
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	5 cut(s)	180, 191, 362, 465, 568
BstMBI	GATC	5 cut(s)	177, 188, 359, 462, 565
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 323
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	328, 355
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	403, 484
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	3 cut(s)	343, 561, 688
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	296, 341
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	274, 483
CviAII	CATG	3 cut(s)	584, 699, 733
CviJI	RGCY	7 cut(s)	143, 158, 384, 394, 497, 542, 704
CviKI_1	RGCY	7 cut(s)	143, 158, 384, 394, 497, 542, 704
CviQI	GTAC	2 cut(s)	274, 483
DdeI	CTNAG	4 cut(s)	139, 277, 387, 479
DinI	GGCGCC	1 cut(s)	316
DpnI	GATC	5 cut(s)	179, 190, 361, 464, 567
DpnII	GATC	5 cut(s)	177, 188, 359, 462, 565
Eam1104I	CTCTTC	2 cut(s)	606, 685
EarI	CTCTTC	2 cut(s)	606, 685
Eco24I	GRGCYC	2 cut(s)	386, 706
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	296, 341
EcoRV	GATATC	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	386, 706
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
FaeI	CATG	3 cut(s)	587, 702, 736
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	3 cut(s)	583, 698, 732
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	392, 498
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	386, 706
Fsp4HI	GCNGC	2 cut(s)	392, 498
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	2 cut(s)	392, 498
HaeII	RGCGCY	1 cut(s)	318
HapII	CCGG	5 cut(s)	72, 86, 330, 357, 431
HhaI	GCGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	587, 702, 736
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	1 cut(s)	656
HindII	GTYRAC	1 cut(s)	656
HinfI	GANTC	5 cut(s)	107, 204, 374, 475, 517
HpaII	CCGG	5 cut(s)	72, 86, 330, 357, 431
HphI	GGTGA	2 cut(s)	183, 199
Hpy166II	GTNNAC	4 cut(s)	341, 485, 656, 667
Hpy188I	TCNGA	3 cut(s)	104, 125, 256
Hpy188III	TCNNGA	2 cut(s)	442, 492
Hpy8I	GTNNAC	4 cut(s)	341, 485, 656, 667
Hpy99I	CGWCG	3 cut(s)	10, 230, 260
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 323
HpyF3I	CTNAG	4 cut(s)	139, 277, 387, 479
HpySE526I	ACGT	1 cut(s)	619
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	587, 702, 736
HspAI	GCGC	1 cut(s)	315
KasI	GGCGCC	1 cut(s)	314
Kzo9I	GATC	5 cut(s)	177, 188, 359, 462, 565
LmnI	GCTCC	2 cut(s)	381, 433
LpnPI	CCDG	8 cut(s)	85, 99, 183, 343, 370, 399, 444, 694
Lsp1109I	GCAGC	2 cut(s)	403, 484
LweI	GCATC	1 cut(s)	587
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	3 cut(s)	615, 641, 694
MalI	GATC	5 cut(s)	179, 190, 361, 464, 567
MboI	GATC	5 cut(s)	177, 188, 359, 462, 565
MboII	GAAGA	7 cut(s)	228, 430, 585, 588, 591, 623, 702
MhlI	GDGCHC	3 cut(s)	386, 688, 706
MluCI	AATT	9 cut(s)	91, 163, 260, 303, 319, 349, 367, 418, 715
Mly113I	GGCGCC	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	2 cut(s)	103, 279
MnlI	CCTC	1 cut(s)	356
MseI	TTAA	2 cut(s)	263, 396
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	5 cut(s)	72, 86, 330, 357, 431
MspR9I	CCNGG	2 cut(s)	330, 357
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	149, 323
NarI	GGCGCC	1 cut(s)	315
NciI	CCSGG	2 cut(s)	330, 357
NdeII	GATC	5 cut(s)	177, 188, 359, 462, 565
NlaIII	CATG	3 cut(s)	587, 702, 736
NlaIV	GGNNCC	5 cut(s)	253, 298, 316, 343, 383
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	1 cut(s)	736
PciI	ACATGT	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	107, 204, 374, 517
PkrI	GCNGC	2 cut(s)	393, 499
Ple19I	CGATCG	1 cut(s)	465
PleI	GAGTC	1 cut(s)	483
PluTI	GGCGCC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	483
PscI	ACATGT	1 cut(s)	732
PspN4I	GGNNCC	5 cut(s)	253, 298, 316, 343, 383
PspPI	GGNCC	2 cut(s)	296, 341
PvuI	CGATCG	1 cut(s)	465
RsaI	GTAC	2 cut(s)	275, 484
RsaNI	GTAC	2 cut(s)	274, 483
SalI	GTCGAC	1 cut(s)	654
SaqAI	TTAA	2 cut(s)	263, 396
SatI	GCNGC	2 cut(s)	392, 498
Sau3AI	GATC	5 cut(s)	177, 188, 359, 462, 565
Sau96I	GGNCC	2 cut(s)	296, 341
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	330, 357
SduI	GDGCHC	3 cut(s)	386, 688, 706
SetI	ASST	6 cut(s)	196, 253, 396, 426, 499, 622
SfaNI	GCATC	1 cut(s)	587
SfoI	GGCGCC	1 cut(s)	316
SinI	GGWCC	2 cut(s)	296, 341
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	9 cut(s)	91, 163, 260, 303, 319, 349, 367, 418, 715
SsiI	CCGC	1 cut(s)	294
SspDI	GGCGCC	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	328, 355
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	7 cut(s)	180, 202, 228, 473, 655, 688, 706
TasI	AATT	9 cut(s)	91, 163, 260, 303, 319, 349, 367, 418, 715
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	4 cut(s)	107, 204, 374, 517
Tru1I	TTAA	2 cut(s)	263, 396
Tru9I	TTAA	2 cut(s)	263, 396
TscAI	CASTG	3 cut(s)	343, 568, 688
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	2 cut(s)	391, 497
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	343, 568, 688
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	296, 341
XapI	RAATTY	2 cut(s)	91, 367
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.