Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

48066029 .. 48067553

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG262500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGTACCCGTTTTCAGAAGGAAAATTCGTTCTTGGAATTATTTTTGCACTGTGGAGAATGTGTTCAGCAAAAGAAATTTCTACTAATTTTGTGTTTGGCGATTCTCTTGTTGAAGTGGGGAACAACAATTATATTGTGACTCTCTCCAAGGCTGATCATCCTCCCTATGGAATTGATTTCGGAAAGCCTACCGGGAGATACACAAATGGAAGAACCATCATTGATATTGCAGGTTTTGAGAATGCAAACTCCGCGTGCTGCGGATTTGGTGGGCGCTATGGGGGTCTAGGCTCATGCGGTCCTCAGCCATCAGAAGTTTGTGAGGACCGGTCTAAGTATGTGTTTTGGGACGCTTACCATCCTTCTGAGGCTTGTAATATGATCATAGCAGGGCGTCTCTTGTATGGGAACTCCAGCGATATTTCACCCATGAATATTGTGCAACTCCTCCAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

5.27

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AccII	CGCG	1 cut(s)	257
AciI	CCGC	3 cut(s)	255, 264, 300
AcsI	RAATTY	2 cut(s)	26, 78
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgeI	ACCGGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	116
AloI	GAACNNNNNNTCC	4 cut(s)	15, 47, 49, 81
Alw26I	GTCTC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	26, 78
AsiGI	ACCGGT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	64
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	302, 328
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	420
AvaII	GGWCC	2 cut(s)	302, 328
BanI	GGYRCC	1 cut(s)	6
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	3 cut(s)	227, 319, 369
BclI	TGATCA	2 cut(s)	157, 384
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	302, 328
BmgT120I	GGNCC	2 cut(s)	302, 328
BmiI	GGNNCC	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	160, 361
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	320, 360
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	6
BshTI	ACCGGT	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	195, 331
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	157, 384
BspACI	CCGC	3 cut(s)	255, 264, 300
BspCNI	CTCAG	2 cut(s)	319, 361
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	8
BspMI	ACCTGC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	157, 384
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	306, 336, 369
BstF5I	GGATG	2 cut(s)	160, 361
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	160, 387
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	2 cut(s)	157, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	194
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	160, 361
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	302, 328
CseI	GACGC	2 cut(s)	362, 386
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	330
CviAII	CATG	2 cut(s)	297, 433
CviJI	RGCY	5 cut(s)	155, 190, 294, 310, 374
CviKI_1	RGCY	5 cut(s)	155, 190, 294, 310, 374
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	306, 336, 369
DpnI	GATC	2 cut(s)	159, 386
DpnII	GATC	2 cut(s)	157, 384
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	302, 328
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	2 cut(s)	300, 436
FaiI	YATR	9 cut(s)	135, 171, 282, 298, 342, 383, 389, 408, 434
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	296, 432
FbaI	TGATCA	2 cut(s)	157, 384
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	147, 348
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	400
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	2 cut(s)	195, 331
HgaI	GACGC	2 cut(s)	362, 386
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	300, 436
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	104, 142
HpaII	CCGG	2 cut(s)	195, 331
HphI	GGTGA	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	19, 185, 316, 370
Hpy188III	TCNNGA	1 cut(s)	462
HpyAV	CCTTC	2 cut(s)	14, 375
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	50, 233, 248, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	306, 336, 369
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	300, 436
HspAI	GCGC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	157, 384
Kzo9I	GATC	2 cut(s)	157, 384
LpnPI	CCDG	5 cut(s)	208, 219, 344, 378, 430
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	159, 386
MboI	GATC	2 cut(s)	157, 384
MboII	GAAGA	2 cut(s)	225, 450
MluCI	AATT	6 cut(s)	26, 39, 78, 88, 130, 174
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	5 cut(s)	174, 315, 319, 364, 461
MroXI	GAANNNNTTC	1 cut(s)	64
MspI	CCGG	2 cut(s)	195, 331
MspR9I	CCNGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	250
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	157, 384
NlaIII	CATG	2 cut(s)	300, 436
NlaIV	GGNNCC	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	104
PinAI	ACCGGT	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	302, 328
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	2 cut(s)	157, 384
Sau96I	GGNCC	2 cut(s)	302, 328
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	1 cut(s)	238
SinI	GGWCC	2 cut(s)	302, 328
Sse9I	AATT	6 cut(s)	26, 39, 78, 88, 130, 174
SsiI	CCGC	3 cut(s)	255, 264, 300
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	54
TasI	AATT	6 cut(s)	26, 39, 78, 88, 130, 174
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	302, 328
XapI	RAATTY	2 cut(s)	26, 78
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.