Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

48225259 .. 48239263

Gene Structure 14005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGTGGCCTATTTTCAGATGGAAAATTCATTCTTGGCATCATTTTTGCACTCTGGAGAATGTGTTCAGCAAAAGAAACTCCTGCTAATTTTGTGTTTGGCGATTCTCTAGTTGAAGTGGGGAACAACAACTATATTGCGACTCTCTCCAAGGCTGATTATCCTCCCAATGGAATCGATTTCGGAAAGCCTACCGGGAGATACACAAATGGAAGAACCATCATTGACATTATAGGCAAGTTTCGAGAATGCAAACTCTGCATGCTGCAGAGTAGCAGGGCGCTACGGGGGTCTAATTCCATGCGGTCCTCAGCCATCAAAAGTTTGCGTGGACCGGTCGAAAGATCATGGATTCATGGCCGATCAACATTTTTTGAAGATAACCTAGAAACAACCGGCCACGACAACATAGTTCTTCAGCTTCTGTTTTCCGTTGCTTTCGACTCCTTAATGACTGCATTGTCATATAACAATTCAACTGACAATCTTCAAGGAAAAGGTGTGGATCGTAGAAGGGCAGAATTTGAGAGACGGAAGGCAGACAGGAAGGAACAAATTACTCCAATGATATTGAGGCCAGGAAACAAGAGAGGGAGGCAACGAGGAAGAAAATATACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

207

Amino Acids

23.32

Weight (kDa)

10.05

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	460
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	2 cut(s)	358, 397
AcsI	RAATTY	2 cut(s)	26, 521
AcuI	CTGAAG	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	116, 377, 477, 491
AjnI	CCWGG	1 cut(s)	577
AloI	GAACNNNNNNTCC	2 cut(s)	49, 81
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	4 cut(s)	7, 358, 397, 575
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	26, 521
AsiGI	ACCGGT	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	306, 332
AsuC2I	CCSGG	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	306, 332
BarI	GAAGNNNNNNTAC	1 cut(s)	598
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	3 cut(s)	14, 227, 323
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	110, 386
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	196, 579
Bme18I	GGWCC	2 cut(s)	306, 332
BmgT120I	GGNCC	2 cut(s)	306, 332
BmrFI	CCNGG	2 cut(s)	196, 579
BmsI	GCATC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	2 cut(s)	334, 395
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	9, 360, 399, 577
BshTI	ACCGGT	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	195, 335, 396
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	523
BsmBI	CGTCTC	1 cut(s)	523
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	4 cut(s)	9, 360, 399, 577
Bsp143I	GATC	3 cut(s)	344, 362, 505
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	4 cut(s)	9, 360, 399, 577
BspCNI	CTCAG	1 cut(s)	323
BspDI	ATCGAT	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	1 cut(s)	513
BsrFI	RCCGGY	2 cut(s)	334, 395
BssAI	RCCGGY	2 cut(s)	334, 395
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	344, 362, 505
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	347, 365, 508
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	344, 362, 505
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	194, 577
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	9, 360, 399, 577
BsuTUI	ATCGAT	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	424
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	2 cut(s)	334, 395
Cfr13I	GGNCC	2 cut(s)	306, 332
ClaI	ATCGAT	1 cut(s)	177
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	4 cut(s)	262, 301, 348, 356
CviJI	RGCY	8 cut(s)	9, 155, 190, 314, 360, 399, 421, 577
CviKI_1	RGCY	8 cut(s)	9, 155, 190, 314, 360, 399, 421, 577
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	3 cut(s)	346, 364, 507
DpnII	GATC	3 cut(s)	344, 362, 505
DrdI	GACNNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	358, 397
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	306, 332
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	4 cut(s)	265, 304, 351, 359
FatI	CATG	4 cut(s)	261, 300, 347, 355
Fnu4HI	GCNGC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	2 cut(s)	110, 386
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	4 cut(s)	9, 360, 399, 577
HapII	CCGG	3 cut(s)	195, 335, 396
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	265, 304, 351, 359
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	5 cut(s)	104, 142, 174, 352, 443
HpaII	CCGG	3 cut(s)	195, 335, 396
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	19, 185, 623
Hpy188III	TCNNGA	2 cut(s)	55, 245
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	507, 529, 541
HpyCH4V	TGCA	5 cut(s)	50, 252, 261, 268, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	265, 304, 351, 359
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	344, 362, 505
LpnPI	CCDG	9 cut(s)	40, 96, 208, 262, 348, 409, 529, 564, 591
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	110, 386
MalI	GATC	3 cut(s)	346, 364, 507
MboI	GATC	3 cut(s)	344, 362, 505
MboII	GAAGA	5 cut(s)	225, 389, 407, 479, 618
MluCI	AATT	6 cut(s)	26, 88, 295, 472, 521, 555
MlyI	GAGTC	2 cut(s)	136, 437
MnlI	CCTC	6 cut(s)	174, 319, 567, 584, 588, 596
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	449
MspI	CCGG	3 cut(s)	195, 335, 396
MspR9I	CCNGG	2 cut(s)	196, 579
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	3 cut(s)	344, 362, 505
NlaIII	CATG	4 cut(s)	265, 304, 351, 359
NspI	RCATGY	1 cut(s)	265
PaeI	GCATGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	104, 174, 352
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	2 cut(s)	136, 437
PpsI	GAGTC	2 cut(s)	136, 437
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspPI	GGNCC	2 cut(s)	306, 332
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	3 cut(s)	344, 362, 505
Sau96I	GGNCC	2 cut(s)	306, 332
SchI	GAGTC	2 cut(s)	136, 437
ScrFI	CCNGG	2 cut(s)	196, 579
SetI	ASST	3 cut(s)	387, 423, 502
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	306, 332
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	6 cut(s)	26, 88, 295, 472, 521, 555
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	110, 386
StyD4I	CCNGG	2 cut(s)	194, 577
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	4 cut(s)	177, 244, 339, 441
TasI	AATT	6 cut(s)	26, 88, 295, 472, 521, 555
TfiI	GAWTC	3 cut(s)	104, 174, 352
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	19, 344
TspGWI	ACGGA	2 cut(s)	421, 547
VpaK11BI	GGWCC	2 cut(s)	306, 332
XapI	RAATTY	2 cut(s)	26, 521
XceI	RCATGY	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	2 cut(s)	110, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.