Rroxscaffold_6G00425630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001879
Physical Location & Seq
Reverse (-)
46640432 .. 46641575
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425630.1

Sequence Viewer

Length: 465 bp
ATGCGAGAGAAGCGAGAATGCGCGACCTCTATACTTGACGGCTCCAAAGGAGGTAGCGGTCCGAATGACCGGCGGTTCCGACAACGTCGCGGCACCGAGATGGTTGCTCCGATTGCTGTCTTGCTCGCCAATCGGATCGACGGAGACGAGTTTCGGTCGGATTTCGAAGGCCTCGACATCACTACCATTAGAGAAGTGAAGGAGGCGTCGAACTCCGTCTTCACGATCTTGGACGATATGGTGGCGATCTTCCACACCGATGCTGCGGTCGAAGCTACCGGAGTTGAACTCAATCTTGATGCAAAGCCTTGCGGTGGAGCTTGCCGGCATCGTCGAGGCGGAGGACGCGGCGGGCGCCGAGAGGAAGTCTTTGGATTTGGCAAGGAATCGGAAGTGGGTGTCAATCTCGAACCTTCCAAGTCCAACGGAGTCCTCGCAGATACTTTGAACTTCGGTCGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.69

Weight (kDa)

5.78

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 92, 354
AccII CGCG 3 cut(s) 23, 90, 348
AciI CCGC 8 cut(s) 57, 73, 90, 266, 312, 339, 348, 351
AclWI GGATC 1 cut(s) 143
AcyI GRCGYC 2 cut(s) 206, 355
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 287, 448
AluBI AGCT 2 cut(s) 275, 320
AluI AGCT 2 cut(s) 275, 320
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 263
AspLEI GCGC 2 cut(s) 23, 357
AspS9I GGNCC 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 59
BanI GGYRCC 2 cut(s) 92, 354
BbsI GAAGAC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 463
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 3 cut(s) 91, 264, 349
BlsI GCNGC 3 cut(s) 92, 265, 350
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 4 cut(s) 43, 77, 94, 356
BmsI GCATC 3 cut(s) 250, 289, 337
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 273, 305
Bpu14I TTCGAA 1 cut(s) 165
BsaHI GRCGYC 2 cut(s) 206, 355
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 2 cut(s) 69, 324
BseLI CCNNNNNNNGG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 3 cut(s) 23, 90, 348
Bsh1285I CGRYCG 3 cut(s) 158, 270, 457
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 2 cut(s) 92, 354
BsiEI CGRYCG 3 cut(s) 158, 270, 457
BsiSI CCGG 3 cut(s) 70, 279, 325
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 135, 225, 246
BspACI CCGC 8 cut(s) 57, 73, 90, 266, 312, 339, 348, 351
BspANI GGCC 1 cut(s) 171
BspFNI CGCG 3 cut(s) 23, 90, 348
BspLI GGNNCC 4 cut(s) 43, 77, 94, 356
BspPI GGATC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 165
BspT107I GGYRCC 2 cut(s) 92, 354
BsrFI RCCGGY 2 cut(s) 69, 324
BssAI RCCGGY 2 cut(s) 69, 324
BssMI GATC 3 cut(s) 135, 225, 246
BssNI GRCGYC 2 cut(s) 206, 355
BstACI GRCGYC 2 cut(s) 206, 355
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 126, 322, 326, 353
BstFNI CGCG 3 cut(s) 23, 90, 348
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 2 cut(s) 23, 357
BstKTI GATC 3 cut(s) 138, 228, 249
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 135, 225, 246
BstMCI CGRYCG 3 cut(s) 158, 270, 457
BstMWI GCNNNNNNNGC 5 cut(s) 10, 113, 272, 345, 354
BstUI CGCG 3 cut(s) 23, 90, 348
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 171
Cac8I GCNNGC 4 cut(s) 126, 322, 326, 353
CfoI GCGC 2 cut(s) 23, 357
Cfr10I RCCGGY 2 cut(s) 69, 324
Cfr13I GGNCC 1 cut(s) 59
CpoI CGGWCCG 1 cut(s) 59
CseI GACGC 2 cut(s) 195, 354
CspI CGGWCCG 1 cut(s) 59
CviJI RGCY 5 cut(s) 42, 171, 275, 307, 320
CviKI_1 RGCY 5 cut(s) 42, 171, 275, 307, 320
DinI GGCGCC 1 cut(s) 356
DpnI GATC 3 cut(s) 137, 227, 248
DpnII GATC 3 cut(s) 135, 225, 246
EciI GGCGGA 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 356
EheI GGCGCC 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 138
FaiI YATR 2 cut(s) 32, 239
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 3 cut(s) 91, 264, 349
Fsp4HI GCNGC 3 cut(s) 91, 264, 349
FspBI CTAG 1 cut(s) 463
GlaI GCGC 2 cut(s) 22, 356
GluI GCNGC 3 cut(s) 91, 264, 349
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 1 cut(s) 171
HapII CCGG 3 cut(s) 70, 279, 325
HgaI GACGC 2 cut(s) 195, 354
HhaI GCGC 2 cut(s) 23, 357
Hin1I GRCGYC 2 cut(s) 206, 355
Hin6I GCGC 2 cut(s) 21, 355
HinP1I GCGC 2 cut(s) 21, 355
HinfI GANTC 2 cut(s) 386, 429
HpaII CCGG 3 cut(s) 70, 279, 325
Hpy188I TCNGA 6 cut(s) 63, 80, 111, 135, 160, 391
Hpy188III TCNNGA 3 cut(s) 223, 296, 407
Hpy99I CGWCG 4 cut(s) 90, 143, 211, 336
HpyAV CCTTC 3 cut(s) 161, 193, 423
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 113, 272, 345, 354
HpySE526I ACGT 1 cut(s) 85
Hsp92I GRCGYC 2 cut(s) 206, 355
HspAI GCGC 2 cut(s) 21, 355
KasI GGCGCC 1 cut(s) 354
KroI GCCGGC 1 cut(s) 324
KroNI GCCGGC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 135, 225, 246
LmnI GCTCC 3 cut(s) 47, 112, 317
LpnPI CCDG 3 cut(s) 83, 292, 338
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 3 cut(s) 250, 289, 337
MaeI CTAG 1 cut(s) 463
MaeII ACGT 1 cut(s) 85
MalI GATC 3 cut(s) 137, 227, 248
MboI GATC 3 cut(s) 135, 225, 246
MboII GAAGA 2 cut(s) 211, 241
Mly113I GGCGCC 1 cut(s) 355
MlyI GAGTC 1 cut(s) 438
MmeI TCCRAC 3 cut(s) 103, 138, 447
MnlI CCTC 8 cut(s) 37, 44, 182, 196, 329, 335, 355, 443
MroNI GCCGGC 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 98, 258
MspI CCGG 3 cut(s) 70, 279, 325
Mva1269I GAATGC 1 cut(s) 23
MvnI CGCG 3 cut(s) 23, 90, 348
MwoI GCNNNNNNNGC 5 cut(s) 10, 113, 272, 345, 354
NaeI GCCGGC 1 cut(s) 326
NarI GGCGCC 1 cut(s) 355
NdeII GATC 3 cut(s) 135, 225, 246
NgoMIV GCCGGC 1 cut(s) 324
NlaIV GGNNCC 4 cut(s) 43, 77, 94, 356
NmeAIII GCCGAG 1 cut(s) 383
NspV TTCGAA 1 cut(s) 165
PceI AGGCCT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 171
PctI GAATGC 1 cut(s) 23
PdiI GCCGGC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 84
PkrI GCNGC 3 cut(s) 92, 265, 350
PleI GAGTC 1 cut(s) 437
PluTI GGCGCC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 437
PspN4I GGNNCC 4 cut(s) 43, 77, 94, 356
PspPI GGNCC 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 84
RseI CAYNNNNRTG 2 cut(s) 98, 258
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SatI GCNGC 3 cut(s) 91, 264, 349
Sau3AI GATC 3 cut(s) 135, 225, 246
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 438
SetI ASST 7 cut(s) 29, 55, 88, 277, 322, 415, 464
SfaNI GCATC 3 cut(s) 250, 289, 337
SfoI GGCGCC 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 2 cut(s) 98, 258
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 8 cut(s) 57, 73, 90, 266, 312, 339, 348, 351
SspDI GGCGCC 1 cut(s) 354
SspMI CTAG 1 cut(s) 463
StuI AGGCCT 1 cut(s) 171
TaiI ACGT 1 cut(s) 88
TaqI TCGA 7 cut(s) 138, 165, 174, 209, 270, 334, 408
TaqII GACCGA 2 cut(s) 144, 443
TauI GCSGC 2 cut(s) 93, 351
TfiI GAWTC 1 cut(s) 386
TseI GCWGC 1 cut(s) 263
TspGWI ACGGA 3 cut(s) 156, 205, 441
Tth111I GACNNNGTC 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 59
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.