Rh3BG001300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001879
Physical Location & Seq
Reverse (-)
160495 .. 160665
171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG001300.1

Sequence Viewer

Length: 171 bp
ATGCAAAGCCTCGCAGTGGAGCTTGCCGACAACGTCGAGGCGGAGGACGCGGTGGAGCTGCTTCGAGAGGAAGTCTTTGGATTTGGCGAGGAATCAGAAGTGGGCGTCAATCTCGAACCTTCCGAGTCCAATGGAGTCCTCGTAGACACTTTGAACTCCTGTTGCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

5.97

Weight (kDa)

4.05

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 50
AciI CCGC 2 cut(s) 41, 50
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 22, 58
AluI AGCT 2 cut(s) 22, 58
ApeKI GCWGC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 45
BfaI CTAG 1 cut(s) 169
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 16
BspACI CCGC 2 cut(s) 41, 50
BspFNI CGCG 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 24
BstFNI CGCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 24
CseI GACGC 2 cut(s) 56, 94
CviJI RGCY 3 cut(s) 9, 22, 58
CviKI_1 RGCY 3 cut(s) 9, 22, 58
EciI GGCGGA 1 cut(s) 56
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 169
GluI GCNGC 1 cut(s) 59
HgaI GACGC 2 cut(s) 56, 94
Hin1I GRCGYC 1 cut(s) 105
HinfI GANTC 3 cut(s) 92, 125, 135
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 97, 124
Hpy188III TCNNGA 2 cut(s) 65, 113
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 105
LmnI GCTCC 3 cut(s) 19, 55, 170
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 169
MaeII ACGT 1 cut(s) 33
MlyI GAGTC 2 cut(s) 134, 144
MnlI CCTC 6 cut(s) 20, 31, 37, 61, 82, 149
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 92
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 2 cut(s) 133, 143
PpsI GAGTC 2 cut(s) 133, 143
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 1 cut(s) 59
SchI GAGTC 2 cut(s) 134, 144
SetI ASST 4 cut(s) 24, 36, 60, 121
SgeI CNNG 9 cut(s) 23, 35, 49, 61, 77, 100, 125, 136, 152
SsiI CCGC 2 cut(s) 41, 50
SspMI CTAG 1 cut(s) 169
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 36, 64, 114
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 58
TspRI CASTG 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.