Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

47985906 .. 47990670

Gene Structure 4765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTACAAGGTTGGGCAAACGGCTTTTGCTACCTAGCACAGGTTGGTGCGGGTGGTGATGAGTTTTCTCGTTGCAATGTTTGTATTCTGGTTAGGCTTCTATTTGAGCTTTTGGTTTCCATTTACTGTTGGCATTGCGGATTGCCTGACGAGCCTTTGGATTTCAGCTTCTTTTGGATTCCCCCGGACCCTCACCAAGTATTCCTCCTACCTCCTGAATGGTATAACTCTGAACTCACTCTTGGTTTTAAGGGGTTCACTCCTCCTTACTTAGCTCCCACAACAGCTGGACCAGTAATTCTGAGGGGTGTTAACTATGCTTCAGGTGGAGGTGGAATTCTTAATGAAACAGGAAAAATATTTGTTGGTAGAATAAACTTGGAAGCACAGACAGATAACTTTGCAAATACCGGGCAAGATATTATCTCAAGAATTGGTCTTCATGCAGCTATAAAGCTACATAGAAGTTTCGAGAATACAAACCCTGCATGCTGCAGAGTAGCAGGGCGCTACGGAGGTTTAATTCCATGCGGTCCTCAGCCATCAAAAGTTTGCGTGGACCGGTCGAAGTATATGTTTTGGGATCCTTACCATCCTTCTGATGCTTCTAATACGATCATAGCAAGGCGTCTCTTGTATGGGAACTCCAGTGATATTTCACCCATGAATGTAGTGCAACTCCTCCAAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

231

Amino Acids

25.43

Weight (kDa)

6.18

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 138, 531
AclWI	GGATC	2 cut(s)	578, 591
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgeI	ACCGGT	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	7 cut(s)	109, 168, 275, 287, 449, 457, 689
AluI	AGCT	7 cut(s)	109, 168, 275, 287, 449, 457, 689
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	2 cut(s)	578, 591
ApeKI	GCWGC	2 cut(s)	446, 492
ApoI	RAATTY	1 cut(s)	336
AsiGI	ACCGGT	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	4 cut(s)	187, 290, 533, 559
AsuC2I	CCSGG	2 cut(s)	185, 412
AsuHPI	GGTGA	3 cut(s)	68, 185, 651
AvaII	GGWCC	4 cut(s)	187, 290, 533, 559
BamHI	GGATCC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	431
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	458, 479
BccI	CCATC	2 cut(s)	550, 600
BceAI	ACGGC	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	185, 412
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	493
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	2 cut(s)	447, 493
BlsI	GCNGC	2 cut(s)	448, 494
Bme1390I	CCNGG	2 cut(s)	185, 412
Bme18I	GGWCC	4 cut(s)	187, 290, 533, 559
BmgT120I	GGNCC	4 cut(s)	187, 290, 533, 559
BmiI	GGNNCC	2 cut(s)	189, 585
BmrFI	CCNGG	2 cut(s)	185, 412
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	2 cut(s)	185, 412
BsaHI	GRCGYC	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	561
Bse1I	ACTGG	2 cut(s)	293, 648
Bse3DI	GCAATG	2 cut(s)	82, 133
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	82, 133
BseMII	CTCAG	2 cut(s)	293, 551
BseNI	ACTGG	2 cut(s)	293, 648
BseRI	GAGGAG	2 cut(s)	252, 671
BseXI	GCAGC	2 cut(s)	458, 479
Bsh1285I	CGRYCG	1 cut(s)	566
BshTI	ACCGGT	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	566
BsiSI	CCGG	3 cut(s)	185, 411, 562
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	635
BsmBI	CGTCTC	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	583, 615
BspACI	CCGC	3 cut(s)	50, 138, 531
BspCNI	CTCAG	2 cut(s)	294, 550
BspLI	GGNNCC	2 cut(s)	189, 585
BspMAI	CTGCAG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	578, 591
BsrDI	GCAATG	2 cut(s)	82, 133
BsrFI	RCCGGY	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	293, 648
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	583, 615
BssNI	GRCGYC	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	271, 302, 537
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	586, 618
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	583, 615
BstMCI	CGRYCG	1 cut(s)	566
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	183, 410
BstSFI	CTRYAG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	458, 479
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	4 cut(s)	187, 290, 533, 559
CseI	GACGC	1 cut(s)	617
CspAI	ACCGGT	1 cut(s)	561
CviAII	CATG	4 cut(s)	443, 489, 528, 664
DdeI	CTNAG	3 cut(s)	271, 302, 537
DpnI	GATC	2 cut(s)	585, 617
DpnII	GATC	2 cut(s)	583, 615
Eco47I	GGWCC	4 cut(s)	187, 290, 533, 559
Eco57I	CTGAAG	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	4 cut(s)	446, 492, 531, 667
FatI	CATG	4 cut(s)	442, 488, 527, 663
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	447, 493
FokI	GGATG	1 cut(s)	579
Fsp4HI	GCNGC	2 cut(s)	447, 493
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	2 cut(s)	447, 493
GsuI	CTGGAG	1 cut(s)	631
HaeII	RGCGCY	1 cut(s)	511
HapII	CCGG	3 cut(s)	185, 411, 562
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	1 cut(s)	628
Hin1II	CATG	4 cut(s)	446, 492, 531, 667
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	1 cut(s)	178
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	185, 411, 562
HphI	GGTGA	3 cut(s)	68, 185, 651
Hpy166II	GTNNAC	3 cut(s)	258, 313, 559
Hpy188I	TCNGA	3 cut(s)	232, 303, 601
Hpy188III	TCNNGA	4 cut(s)	215, 429, 472, 693
Hpy8I	GTNNAC	3 cut(s)	258, 313, 559
HpyAV	CCTTC	1 cut(s)	606
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	6 cut(s)	75, 404, 446, 488, 495, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	271, 302, 537
Hsp92I	GRCGYC	1 cut(s)	628
Hsp92II	CATG	4 cut(s)	446, 492, 531, 667
HspAI	GCGC	1 cut(s)	508
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	583, 615
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	458, 479
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	585, 617
MboI	GATC	2 cut(s)	583, 615
MboII	GAAGA	1 cut(s)	431
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	4 cut(s)	297, 336, 432, 522
MnlI	CCTC	9 cut(s)	201, 215, 222, 273, 297, 323, 509, 546, 692
MseI	TTAA	4 cut(s)	249, 312, 342, 521
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	185, 411, 562
MspR9I	CCNGG	2 cut(s)	185, 412
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	185, 412
NdeII	GATC	2 cut(s)	583, 615
NlaIII	CATG	4 cut(s)	446, 492, 531, 667
NlaIV	GGNNCC	2 cut(s)	189, 585
NspI	RCATGY	1 cut(s)	492
PaeI	GCATGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	561
PkrI	GCNGC	2 cut(s)	448, 494
PspN4I	GGNNCC	2 cut(s)	189, 585
PspPI	GGNCC	4 cut(s)	187, 290, 533, 559
PstI	CTGCAG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	249, 312, 342, 521
SatI	GCNGC	2 cut(s)	447, 493
Sau3AI	GATC	2 cut(s)	583, 615
Sau96I	GGNCC	4 cut(s)	187, 290, 533, 559
ScrFI	CCNGG	2 cut(s)	185, 412
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	493
SinI	GGWCC	4 cut(s)	187, 290, 533, 559
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SphI	GCATGC	1 cut(s)	492
Sse9I	AATT	4 cut(s)	297, 336, 432, 522
SsiI	CCGC	3 cut(s)	50, 138, 531
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	183, 410
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	471, 566
TasI	AATT	4 cut(s)	297, 336, 432, 522
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	4 cut(s)	249, 312, 342, 521
Tru9I	TTAA	4 cut(s)	249, 312, 342, 521
TscAI	CASTG	1 cut(s)	655
TseI	GCWGC	2 cut(s)	446, 492
TspDTI	ATGAA	3 cut(s)	360, 431, 680
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	4 cut(s)	187, 290, 533, 559
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.