Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

53591761 .. 53593597

Gene Structure 1837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTGGCCTATTTTCAGACGGAAAATTCATTCTTGGCATTATTTTTGCACTCTGGAGAATGTGTTCAGCAAAAGAAACTCCTGCTAATTTTGTGTTTGGCGATTCTCTAGTTGAAGTGGGGAACAACAACTATATTGCGACTCTCTCCAAGGCTGATTATCCTCCCAATGGAATCGATTTCGGAAAGCCTACCGGGAGATACACAAATGGAAGAACCATCATTGACATTATAGGCAAAGTAGCAGGGCGCTACGGGGGTCTAATTCCATGCGGTCCTCAGCCATCAAAAGTTTGCGTGGACCGGTCGAAGTATGTGTTTTGGGATGCTTACCATCCTTCTGATGCTTCTAATATGATCATAGCAAGGCGTCTCTTGTATGGGAACTCTAGTGATATTTCACCCATGAATATTGTGCAACTTCTCCAAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

145

Amino Acids

15.79

Weight (kDa)

8.81

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	116
AloI	GAACNNNNNNTCC	2 cut(s)	49, 81
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	377
AoxI	GGCC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	26
AsiGI	ACCGGT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	275, 301
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	393
AvaII	GGWCC	2 cut(s)	275, 301
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	3 cut(s)	227, 292, 342
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	110, 390
BfoI	RGCGCY	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	275, 301
BmgT120I	GGNCC	2 cut(s)	275, 301
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	316, 334
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	331, 334
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	195, 304
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	331, 334
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	357
BstMCI	CGRYCG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	194
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	331, 334
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	275, 301
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	359
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	2 cut(s)	270, 406
CviJI	RGCY	5 cut(s)	9, 155, 190, 283, 431
CviKI_1	RGCY	5 cut(s)	9, 155, 190, 283, 431
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	275, 301
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	273, 409
FaiI	YATR	8 cut(s)	135, 233, 271, 315, 356, 362, 381, 407
FatI	CATG	2 cut(s)	269, 405
FbaI	TGATCA	1 cut(s)	357
FokI	GGATG	2 cut(s)	321, 338
FspBI	CTAG	2 cut(s)	110, 390
GlaI	GCGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	195, 304
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	273, 409
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	3 cut(s)	104, 142, 174
HpaII	CCGG	2 cut(s)	195, 304
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	19, 185, 343
Hpy188III	TCNNGA	2 cut(s)	55, 435
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	50, 418
HpyF3I	CTNAG	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	273, 409
HspAI	GCGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	357
LpnPI	CCDG	5 cut(s)	40, 96, 208, 231, 317
LweI	GCATC	2 cut(s)	316, 334
MaeI	CTAG	2 cut(s)	110, 390
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	1 cut(s)	225
MluCI	AATT	3 cut(s)	26, 88, 264
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	174, 288
MroXI	GAANNNNTTC	1 cut(s)	64
MspI	CCGG	2 cut(s)	195, 304
MspR9I	CCNGG	1 cut(s)	196
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	2 cut(s)	273, 409
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	104, 174
PinAI	ACCGGT	1 cut(s)	303
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	275, 301
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	2 cut(s)	275, 301
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	316, 334
SinI	GGWCC	2 cut(s)	275, 301
Sse9I	AATT	3 cut(s)	26, 88, 264
SsiI	CCGC	1 cut(s)	273
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	2 cut(s)	110, 390
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	2 cut(s)	177, 308
TasI	AATT	3 cut(s)	26, 88, 264
TfiI	GAWTC	2 cut(s)	104, 174
TspDTI	ATGAA	2 cut(s)	19, 422
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	275, 301
XapI	RAATTY	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	2 cut(s)	110, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.