Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Reverse (-)

35369132 .. 35369933

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCCAAGCATCACAAGCATTGTCTAGCTTGGCCTAGGATATGGGACACTTATCCTAGTACACGCACTGAGGCTCGAACTAATCTTGTTCATCGTTTGATGTGGGCATTGAACGCAATTTTTGAAGCAAAAATTAATGTATCTTTCACTAAGAAATGGTCCTTCTGTTCATTCAGAGTACGTCATCCATATCATGTTCCCAAACAACATAATGGCTTTGACTGTGGCATTTACATGATCAAATTCATGCTGGATTATGAGAATGCATGTCAAATTGGGGATAAGTTTGATTATGTAAATGAGCGCGTTCAACTGGCCCTTAGGTTGTTGAAGCACCCAAACAACCTAGCACTCAGCGAAATTGAGAAAGGTATGCAGTCTGAAGAGTCTTCGACTAAAGTTATGCAAACTGAAGAGTCTGAAGAGTCTAGGGGCACGAGTGTCAACAGGAACACCAAGACACTACAACAACTTGATGAAACTCTGCAAAACCATGGTAATGGGAACAATGACAAGAGAAAAGTCATCAGGAAGGAAAGCAAATTGCAAAAAGAACTACCATTTCAACCTGCAAAACGGGGCCGGGGCCGCCCTCTTGGATCAAAGAATAAATCGAAAAAAATAAAACAACCGAATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

213

Amino Acids

24.91

Weight (kDa)

9.84

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccII	CGCG	1 cut(s)	306
AciI	CCGC	1 cut(s)	589
AclWI	GGATC	1 cut(s)	607
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	3 cut(s)	402, 432, 441
AfaI	GTAC	2 cut(s)	61, 180
AgsI	TTSAA	5 cut(s)	112, 125, 311, 331, 566
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
AlwI	GGATC	1 cut(s)	607
AoxI	GGCC	4 cut(s)	32, 315, 580, 586
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	4 cut(s)	159, 316, 580, 586
AsuC2I	CCSGG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	159
AvrII	CCTAGG	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	584
BfaI	CTAG	5 cut(s)	26, 36, 57, 347, 429
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	589
BlnI	CCTAGG	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	590
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	4 cut(s)	159, 316, 580, 586
BmiI	GGNNCC	2 cut(s)	581, 587
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	35, 493, 583
Bse1I	ACTGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	35, 493, 583
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	60, 367
BseNI	ACTGG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	34, 317, 582, 588
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	34, 317, 582, 588
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	237, 599
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	4 cut(s)	34, 317, 582, 588
BspCNI	CTCAG	2 cut(s)	61, 366
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	581, 587
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	3 cut(s)	35, 493, 583
BssMI	GATC	2 cut(s)	237, 599
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	35, 493
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	3 cut(s)	378, 408, 417
BstDEI	CTNAG	5 cut(s)	69, 150, 320, 353, 639
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	2 cut(s)	240, 602
BstMBI	GATC	2 cut(s)	237, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 113, 588
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	500
Bsu36I	CCTNAGG	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	34, 317, 582, 588
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	4 cut(s)	159, 316, 580, 586
Csp6I	GTAC	2 cut(s)	60, 179
CviAII	CATG	5 cut(s)	194, 235, 247, 267, 494
CviJI	RGCY	7 cut(s)	29, 34, 74, 216, 317, 582, 588
CviKI_1	RGCY	7 cut(s)	29, 34, 74, 216, 317, 582, 588
CviQI	GTAC	2 cut(s)	60, 179
DdeI	CTNAG	5 cut(s)	69, 150, 320, 353, 639
DpnI	GATC	2 cut(s)	239, 601
DpnII	GATC	2 cut(s)	237, 599
Eam1104I	CTCTTC	3 cut(s)	378, 408, 417
EarI	CTCTTC	3 cut(s)	378, 408, 417
Eco130I	CCWWGG	2 cut(s)	35, 493
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	402, 432, 441
Eco81I	CCTNAGG	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	35, 493
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	35, 493
FaeI	CATG	5 cut(s)	197, 238, 250, 270, 497
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	193, 234, 246, 266, 493
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	589
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	589
FspBI	CTAG	5 cut(s)	26, 36, 57, 347, 429
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	589
HaeIII	GGCC	4 cut(s)	34, 317, 582, 588
HapII	CCGG	1 cut(s)	583
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	197, 238, 250, 270, 497
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	3 cut(s)	386, 416, 425
HpaII	CCGG	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	62, 445
Hpy188I	TCNGA	3 cut(s)	176, 382, 421
Hpy188III	TCNNGA	1 cut(s)	529
Hpy8I	GTNNAC	2 cut(s)	62, 445
HpyAV	CCTTC	2 cut(s)	172, 526
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	266, 376, 406, 487, 547, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 113, 588
HpyF3I	CTNAG	5 cut(s)	69, 150, 320, 353, 639
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	197, 238, 250, 270, 497
HspAI	GCGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	237, 599
LpnPI	CCDG	6 cut(s)	236, 299, 433, 514, 582, 596
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	5 cut(s)	26, 36, 57, 347, 429
MaeII	ACGT	1 cut(s)	181
MalI	GATC	2 cut(s)	239, 601
MboI	GATC	2 cut(s)	237, 599
MboII	GAAGA	4 cut(s)	381, 395, 425, 434
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	6 cut(s)	117, 132, 242, 273, 360, 542
MlyI	GAGTC	3 cut(s)	395, 425, 434
MnlI	CCTC	2 cut(s)	64, 603
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	233, 498
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	268
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	16, 113, 588
NciI	CCSGG	1 cut(s)	584
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	2 cut(s)	237, 599
NlaIII	CATG	5 cut(s)	197, 238, 250, 270, 497
NlaIV	GGNNCC	2 cut(s)	581, 587
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	270
PctI	GAATGC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	590
PleI	GAGTC	3 cut(s)	394, 424, 433
PpsI	GAGTC	3 cut(s)	394, 424, 433
PshBI	ATTAAT	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	581, 587
PspPI	GGNCC	4 cut(s)	159, 316, 580, 586
RsaI	GTAC	2 cut(s)	61, 180
RsaNI	GTAC	2 cut(s)	60, 179
RseI	CAYNNNNRTG	2 cut(s)	233, 498
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	589
Sau3AI	GATC	2 cut(s)	237, 599
Sau96I	GGNCC	4 cut(s)	159, 316, 580, 586
SchI	GAGTC	3 cut(s)	395, 425, 434
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	6 cut(s)	31, 184, 326, 348, 373, 571
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	233, 498
Sse9I	AATT	6 cut(s)	117, 132, 242, 273, 360, 542
SsiI	CCGC	1 cut(s)	589
SspMI	CTAG	5 cut(s)	26, 36, 57, 347, 429
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	2 cut(s)	35, 493
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	76, 392, 614
TasI	AATT	6 cut(s)	117, 132, 242, 273, 360, 542
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	591
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	80, 159, 235, 492
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	270
XmaJI	CCTAGG	1 cut(s)	35
XspI	CTAG	5 cut(s)	26, 36, 57, 347, 429
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.