Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003958.1

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Reverse (-)

84326 .. 85794

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003958.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgtgttcagcaaaagaaactcctgctaattttgtgtttggcgattctctagttgaagtggggaacaacaactatattgcgactctctccaaggctgattatcctcccaatggaatcgatttcggaaagcctaccgggagatacacaaatggaagaaccatcattgacattataggtcagactcttggttttaaggggttcactcctccttacttagctcccacaacagctggaccagtaattctgaggggtgttaactatgcttcaggtggaagtggaattcttaatgaaacaggaaaaatatttatagataactttgcaaataccaggcaagacattatctcaagaatcggtcttcctgcagctctaaagttacttagaagagctctgttctcagtaacaatcggctcgaatgatttcatcaataactacttggcgccagttatatctgagacggagaggaagtccatacctccggaaacctttgttggcattttgatcgcaagactcggactacaaattacaagactgtacaatttgggtgcaaggaagatggttgtggtaaatgtaggacctattgggtgtataccttatcagagggaagtaaatcaagctgatccagagagctgtgcggaatttccgaatcaactatcacggtcattcaatgccaagctaaggacccttgtcaccgagctaaacaagaaccttcctacggccaattttgtttatgcagatgtttatagtattgtggaagacattattgagaactacatatcatatggtttcgagaatgcaaactctgcatgctgcagagtagcagggcgctacgggggtctaattccatgcggtcctcagccatcaaaagtttgcgtggaccggtcgaagtatgtgttttgggatgcttaccacccttctgatgcttctaatatgatcatagcaaggcgtctcttgtatgggaactccagtgatatttcacccatgaatattgtgcaacttctccaagcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

336

Amino Acids

36.67

Weight (kDa)

8.59

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	586
AccIII	TCCGGA	1 cut(s)	475
AciI	CCGC	2 cut(s)	632, 846
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	2 cut(s)	279, 635
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	2 cut(s)	437, 943
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	110, 675, 712
AgeI	ACCGGT	1 cut(s)	876
AgsI	TTSAA	2 cut(s)	56, 664
AjnI	CCWGG	1 cut(s)	326
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	9 cut(s)	218, 230, 365, 386, 614, 627, 673, 694, 1004
AluI	AGCT	9 cut(s)	218, 230, 365, 386, 614, 627, 673, 694, 1004
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	446, 950
AlwI	GGATC	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	475
AoxI	GGCC	1 cut(s)	714
ApeKI	GCWGC	2 cut(s)	362, 807
ApoI	RAATTY	2 cut(s)	279, 635
AsiGI	ACCGGT	1 cut(s)	876
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	439, 825
AspS9I	GGNCC	5 cut(s)	233, 572, 678, 848, 874
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	679, 966
AvaII	GGWCC	5 cut(s)	233, 572, 678, 848, 874
BanI	GGYRCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	2 cut(s)	347, 759
Bbv12I	GWGCWC	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	852
BbvI	GCAGC	2 cut(s)	374, 794
BccI	CCATC	3 cut(s)	167, 547, 865
BceAI	ACGGC	1 cut(s)	729
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	930
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	446, 950
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	2 cut(s)	360, 808
BfoI	RGCGCY	2 cut(s)	440, 826
BisI	GCNGC	2 cut(s)	363, 808
BlsI	GCNGC	2 cut(s)	364, 809
Bme1390I	CCNGG	2 cut(s)	136, 328
Bme18I	GGWCC	5 cut(s)	233, 572, 678, 848, 874
BmgT120I	GGNCC	5 cut(s)	233, 572, 678, 848, 874
BmiI	GGNNCC	2 cut(s)	438, 680
BmrFI	CCNGG	2 cut(s)	136, 328
BmsI	GCATC	2 cut(s)	889, 907
BoxI	GACNNNNGTC	1 cut(s)	683
BpiI	GAAGAC	2 cut(s)	347, 759
BpmI	CTGGAG	1 cut(s)	946
Bpu10I	CCTNAGC	2 cut(s)	674, 852
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	136
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	2 cut(s)	437, 943
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	2 cut(s)	475, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 675, 712
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	3 cut(s)	236, 440, 963
BseAI	TCCGGA	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	904
BseLI	CCNNNNNNNGG	3 cut(s)	110, 675, 712
BseMII	CTCAG	4 cut(s)	236, 408, 441, 866
BseNI	ACTGG	3 cut(s)	236, 440, 963
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	374, 794
Bsh1285I	CGRYCG	1 cut(s)	881
BshFI	GGCC	1 cut(s)	716
BshNI	GGYRCC	1 cut(s)	436
BshTI	ACCGGT	1 cut(s)	876
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	3 cut(s)	135, 476, 877
BslI	CCNNNNNNNGG	3 cut(s)	110, 675, 712
BsmAI	GTCTC	2 cut(s)	446, 950
BsmBI	CGTCTC	2 cut(s)	446, 950
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	498, 616, 930
BspACI	CCGC	2 cut(s)	632, 846
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	4 cut(s)	237, 407, 442, 865
BspDI	ATCGAT	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	438, 680
BspMAI	CTGCAG	2 cut(s)	364, 812
BspPI	GGATC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	876
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	236, 440, 963
BssAI	RCCGGY	1 cut(s)	876
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	498, 616, 930
BssNAI	GTATAC	1 cut(s)	587
BssNI	GRCGYC	2 cut(s)	437, 943
BssT1I	CCWWGG	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	587
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	531, 657
Bst6I	CTCTTC	1 cut(s)	376
BstACI	GRCGYC	2 cut(s)	437, 943
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	805
BstDEI	CTNAG	7 cut(s)	214, 245, 377, 394, 450, 674, 852
BstF5I	GGATG	1 cut(s)	904
BstH2I	RGCGCY	2 cut(s)	440, 826
BstHHI	GCGC	2 cut(s)	439, 825
BstKTI	GATC	3 cut(s)	501, 619, 933
BstMAI	GTCTC	2 cut(s)	446, 950
BstMBI	GATC	3 cut(s)	498, 616, 930
BstMCI	CGRYCG	1 cut(s)	881
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	807
BstPAI	GACNNNNGTC	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	134, 326
BstSFI	CTRYAG	2 cut(s)	360, 808
BstV1I	GCAGC	2 cut(s)	374, 794
BstV2I	GAAGAC	2 cut(s)	347, 759
BstZ17I	GTATAC	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	716
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	904
BtsIMutI	CAGTG	1 cut(s)	970
Cac8I	GCNNGC	1 cut(s)	805
CfoI	GCGC	2 cut(s)	439, 825
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	5 cut(s)	233, 572, 678, 848, 874
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	532
CspAI	ACCGGT	1 cut(s)	876
CviAII	CATG	3 cut(s)	804, 843, 979
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	7 cut(s)	214, 245, 377, 394, 450, 674, 852
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	3 cut(s)	500, 618, 932
DpnII	GATC	3 cut(s)	498, 616, 930
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	5 cut(s)	233, 572, 678, 848, 874
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	2 cut(s)	572, 678
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	388
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	2 cut(s)	446, 950
FaeI	CATG	3 cut(s)	807, 846, 982
FatI	CATG	3 cut(s)	803, 842, 978
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	930
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	363, 808
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	363, 808
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	438, 824
GluI	GCNGC	2 cut(s)	363, 808
GsuI	CTGGAG	1 cut(s)	946
HaeII	RGCGCY	2 cut(s)	440, 826
HaeIII	GGCC	1 cut(s)	716
HapII	CCGG	3 cut(s)	135, 476, 877
HgaI	GACGC	1 cut(s)	932
HhaI	GCGC	2 cut(s)	439, 825
Hin1I	GRCGYC	2 cut(s)	437, 943
Hin1II	CATG	3 cut(s)	807, 846, 982
Hin6I	GCGC	2 cut(s)	437, 823
HinP1I	GCGC	2 cut(s)	437, 823
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	1002
HinfI	GANTC	7 cut(s)	44, 82, 114, 181, 348, 507, 643
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	135, 476, 877
HphI	GGTGA	2 cut(s)	679, 966
Hpy166II	GTNNAC	4 cut(s)	201, 256, 587, 874
Hpy188I	TCNGA	8 cut(s)	125, 180, 246, 451, 512, 597, 642, 916
Hpy188III	TCNNGA	5 cut(s)	345, 476, 620, 787, 1008
Hpy8I	GTNNAC	4 cut(s)	201, 256, 587, 874
HpyAV	CCTTC	2 cut(s)	716, 921
HpyCH4III	ACNGT	2 cut(s)	531, 657
HpyCH4V	TGCA	8 cut(s)	320, 362, 545, 731, 794, 803, 810, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	7 cut(s)	214, 245, 377, 394, 450, 674, 852
Hsp92I	GRCGYC	2 cut(s)	437, 943
Hsp92II	CATG	3 cut(s)	807, 846, 982
HspAI	GCGC	2 cut(s)	437, 823
KasI	GGCGCC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	930
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	498, 616, 930
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	2 cut(s)	374, 794
LweI	GCATC	2 cut(s)	889, 907
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	3 cut(s)	372, 397, 685
MalI	GATC	3 cut(s)	500, 618, 932
MboI	GATC	3 cut(s)	498, 616, 930
MboII	GAAGA	5 cut(s)	165, 347, 393, 562, 764
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	8 cut(s)	28, 240, 279, 519, 535, 635, 718, 837
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	3 cut(s)	76, 175, 501
MnlI	CCTC	7 cut(s)	114, 216, 240, 453, 483, 591, 861
MroI	TCCGGA	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	3 cut(s)	192, 255, 285
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	135, 476, 877
MspR9I	CCNGG	2 cut(s)	136, 328
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	800
NarI	GGCGCC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	136
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	3 cut(s)	498, 616, 930
NlaIII	CATG	3 cut(s)	807, 846, 982
NlaIV	GGNNCC	2 cut(s)	438, 680
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	1 cut(s)	807
PaeI	GCATGC	1 cut(s)	807
PciSI	GCTCTTC	1 cut(s)	376
PctI	GAATGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	44, 114, 348, 643
PinAI	ACCGGT	1 cut(s)	876
PkrI	GCNGC	2 cut(s)	364, 809
PleI	GAGTC	3 cut(s)	76, 175, 501
PluTI	GGCGCC	1 cut(s)	440
PpsI	GAGTC	3 cut(s)	76, 175, 501
PpuMI	RGGWCCY	2 cut(s)	572, 678
PshAI	GACNNNNGTC	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	388
Psp5II	RGGWCCY	2 cut(s)	572, 678
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	438, 680
PspPI	GGNCC	5 cut(s)	233, 572, 678, 848, 874
PspPPI	RGGWCCY	2 cut(s)	572, 678
PstI	CTGCAG	2 cut(s)	364, 812
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	192, 255, 285
SatI	GCNGC	2 cut(s)	363, 808
Sau3AI	GATC	3 cut(s)	498, 616, 930
Sau96I	GGNCC	5 cut(s)	233, 572, 678, 848, 874
SchI	GAGTC	3 cut(s)	76, 175, 501
ScrFI	CCNGG	2 cut(s)	136, 328
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	2 cut(s)	889, 907
SfcI	CTRYAG	2 cut(s)	360, 808
SfoI	GGCGCC	1 cut(s)	438
SinI	GGWCC	5 cut(s)	233, 572, 678, 848, 874
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	807
Sse9I	AATT	8 cut(s)	28, 240, 279, 519, 535, 635, 718, 837
SsiI	CCGC	2 cut(s)	632, 846
SspDI	GGCGCC	1 cut(s)	436
SspI	AATATT	2 cut(s)	303, 985
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	134, 326
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	531, 657
TaqI	TCGA	4 cut(s)	117, 410, 786, 881
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	8 cut(s)	28, 240, 279, 519, 535, 635, 718, 837
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	4 cut(s)	44, 114, 348, 643
Tru1I	TTAA	3 cut(s)	192, 255, 285
Tru9I	TTAA	3 cut(s)	192, 255, 285
TscAI	CASTG	1 cut(s)	970
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	362, 807
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	303, 409, 995
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	5 cut(s)	233, 572, 678, 848, 874
XapI	RAATTY	2 cut(s)	279, 635
XceI	RCATGY	1 cut(s)	807
XmiI	GTMKAC	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.