Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

49261368 .. 49266390

Gene Structure 5023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCTGTTCAACCTGTTTTATTTCGTGCCGGTTTCAAGTCGTATTATCGGGTCTTGTCGGAATTGACAACCCTACCCTTAATATTTACTGCTGTCACAAAATTAGCAATCGAAATCCTCATTTCCCTCATCCTCTCTGCCACCCCGCTTGATCGTGACTCGACCGCTGCTCCACCGTCCGTCGTTGGAGCAAGCACATCCCACTCCCTAAGTGCCAAGTTAATTGATGGAAAATTCATTCTTGGCATTATTTTTGCACTCTGGAGAATGTGTTCAGCGAAAGAAACTCCTGCTAATTTTGTGTTTGGCGATTCTCTACTTGAAGTGGGGAACAGCAACTATATTGTGACTCTCTCCAAGGCTGATTATCCTCCCAATGGAATCGATTTCGGAAAGCCTACCGGGAAATACACAAATGGAAGAACCATCATTTACATTATAGGCAACTCCGATCAGAGCTATCGGAGTCAAACTCAGTCTCGATGCAAAGCCTTAGAACAGAGCCTTACGATGGAGCTTGTCGGCGTCGTCGAGGTAGAGGATGCGGTGGGGCTGCTTCGAGGGGAAGTCTTTGGATTAAGTGAGGAATCGGAAGTTGGCGTCAATCTTGAACCTTCCGAGTCCAATGGAGTCCTTGCCGATGCTTTGAACTCCGGCCGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

221

Amino Acids

23.74

Weight (kDa)

4.99

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	146, 165, 545, 658
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	2 cut(s)	525, 600
AfiI	CCNNNNNNNGG	2 cut(s)	377, 511
AgsI	TTSAA	5 cut(s)	11, 37, 323, 611, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	2 cut(s)	459, 517
AluI	AGCT	2 cut(s)	459, 517
Alw26I	GTCTC	1 cut(s)	483
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	2 cut(s)	167, 553
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	154, 540
BccI	CCATC	3 cut(s)	221, 434, 505
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	1 cut(s)	664
BisI	GCNGC	3 cut(s)	168, 554, 658
BlsI	GCNGC	3 cut(s)	169, 555, 659
Bme1390I	CCNGG	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	3 cut(s)	473, 532, 631
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
BpmI	CTGGAG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	384
BsaHI	GRCGYC	2 cut(s)	525, 600
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 511
Bse118I	RCCGGY	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	129, 197, 547
BseLI	CCNNNNNNNGG	2 cut(s)	377, 511
BseMII	CTCAG	1 cut(s)	488
BseX3I	CGGCCG	1 cut(s)	655
BseXI	GCAGC	2 cut(s)	154, 540
Bsh1285I	CGRYCG	2 cut(s)	165, 658
BshFI	GGCC	1 cut(s)	657
BshVI	ATCGAT	1 cut(s)	384
BsiEI	CGRYCG	2 cut(s)	165, 658
BsiSI	CCGG	3 cut(s)	30, 402, 654
BslI	CCNNNNNNNGG	2 cut(s)	377, 511
BsmAI	GTCTC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	657
Bsp143I	GATC	2 cut(s)	151, 451
BspACI	CCGC	4 cut(s)	146, 165, 545, 658
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	151, 451
BssNI	GRCGYC	2 cut(s)	525, 600
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	177
BstACI	GRCGYC	2 cut(s)	525, 600
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	209, 474, 493
BstF5I	GGATG	3 cut(s)	129, 197, 547
BstKTI	GATC	2 cut(s)	154, 454
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	2 cut(s)	151, 451
BstMCI	CGRYCG	2 cut(s)	165, 658
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	154, 540
BstZI	CGGCCG	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	657
BsuTUI	ATCGAT	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	129, 197, 547
Cac8I	GCNNGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	384
CseI	GACGC	2 cut(s)	514, 589
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviJI	RGCY	8 cut(s)	362, 397, 459, 491, 504, 517, 553, 657
CviKI_1	RGCY	8 cut(s)	362, 397, 459, 491, 504, 517, 553, 657
DdeI	CTNAG	3 cut(s)	209, 474, 493
DpnI	GATC	2 cut(s)	153, 453
DpnII	GATC	2 cut(s)	151, 451
EaeI	YGGCCR	1 cut(s)	655
EagI	CGGCCG	1 cut(s)	655
EclXI	CGGCCG	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaiI	YATR	2 cut(s)	342, 440
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	168, 554, 658
FokI	GGATG	3 cut(s)	116, 184, 554
Fsp4HI	GCNGC	3 cut(s)	168, 554, 658
FspBI	CTAG	1 cut(s)	664
GluI	GCNGC	3 cut(s)	168, 554, 658
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	3 cut(s)	30, 402, 654
HgaI	GACGC	2 cut(s)	514, 589
Hin1I	GRCGYC	2 cut(s)	525, 600
HinfI	GANTC	8 cut(s)	158, 311, 349, 381, 466, 587, 620, 630
HpaII	CCGG	3 cut(s)	30, 402, 654
Hpy188I	TCNGA	7 cut(s)	61, 392, 451, 456, 465, 592, 619
Hpy188III	TCNNGA	4 cut(s)	155, 262, 480, 608
Hpy99I	CGWCG	3 cut(s)	185, 530, 533
HpyAV	CCTTC	1 cut(s)	624
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	257, 486
HpyF3I	CTNAG	3 cut(s)	209, 474, 493
Hsp92I	GRCGYC	2 cut(s)	525, 600
Kzo9I	GATC	2 cut(s)	151, 451
LmnI	GCTCC	3 cut(s)	175, 188, 514
LpnPI	CCDG	6 cut(s)	18, 27, 43, 247, 303, 415
Lsp1109I	GCAGC	2 cut(s)	154, 540
LweI	GCATC	3 cut(s)	473, 532, 631
MaeI	CTAG	1 cut(s)	664
MaeIII	GTNAC	3 cut(s)	94, 155, 346
MalI	GATC	2 cut(s)	153, 453
MboI	GATC	2 cut(s)	151, 451
MboII	GAAGA	1 cut(s)	432
MluCI	AATT	5 cut(s)	62, 101, 222, 233, 295
MlyI	GAGTC	5 cut(s)	152, 343, 475, 629, 639
MmeI	TCCRAC	2 cut(s)	39, 166
MnlI	CCTC	8 cut(s)	128, 137, 143, 381, 526, 532, 554, 577
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	3 cut(s)	80, 221, 578
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	3 cut(s)	30, 402, 654
MspR9I	CCNGG	1 cut(s)	403
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	2 cut(s)	151, 451
NmuCI	GTSAC	3 cut(s)	94, 155, 346
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	311, 381, 587
PkrI	GCNGC	3 cut(s)	169, 555, 659
PleI	GAGTC	5 cut(s)	152, 343, 474, 628, 638
PpsI	GAGTC	5 cut(s)	152, 343, 474, 628, 638
SaqAI	TTAA	3 cut(s)	80, 221, 578
SatI	GCNGC	3 cut(s)	168, 554, 658
Sau3AI	GATC	2 cut(s)	151, 451
SchI	GAGTC	5 cut(s)	152, 343, 475, 629, 639
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	6 cut(s)	16, 461, 519, 537, 616, 665
SfaNI	GCATC	3 cut(s)	473, 532, 631
Sse9I	AATT	5 cut(s)	62, 101, 222, 233, 295
SsiI	CCGC	4 cut(s)	146, 165, 545, 658
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	664
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	6 cut(s)	111, 161, 384, 481, 531, 559
TasI	AATT	5 cut(s)	62, 101, 222, 233, 295
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	311, 381, 587
Tru1I	TTAA	3 cut(s)	80, 221, 578
Tru9I	TTAA	3 cut(s)	80, 221, 578
TseFI	GTSAC	3 cut(s)	94, 155, 346
TseI	GCWGC	2 cut(s)	167, 553
Tsp45I	GTSAC	3 cut(s)	94, 155, 346
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	169
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.