Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001900.1

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Reverse (-)

185592 .. 187075

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001900.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgtgtttggcaaaagaaactcttgctaattttgtgtttggggattctctggttgaagtggggaacaacaactacattccctcactctccaaggctgattatcctcccaatggaatcgatttcggaaagcctaccgggcgatacacaaatgcaagaaccgtcattgacattataggtcagagtgctctgggtttgaaggagttcactcctccttacttagctcccacaacagctggaccagtaattctgaggggtgtcaactatgcttcaggtggaggtggaattcttaatgaaacaggaaaaatatatgttggtagaataaacatggatgcacagatagataattttgcaaataccagacaagacattatctcaagcattggtcttcctgcagcagtagagctacttagaagatctctcttctcagtaacaatcggctcaaacgatttcctcagtaactacttggtgccagttataactgaggttaagaggaagttgataccgccggaaacttttgttggcattttgattgcaagattcagactacaacttacaagactgtacaatttgggtgcaaggaagatggttgtgttaaatttaggacctattgggtgtataccctttgagagggaagtaaatctggtagcagatccagataagtgtgctgaatttccaaatcaattagcacggtcattcaatgccaagctaaggacccttgtcaccgagctaaacaagaatcttcccggggccaaatttgtgtatggaaatgctcatagtattgtggaagacatcattgagaactacatatcatatggtttcgagaatacaaactctgcgtgctgcagtgtagtagggcgctacgggggtctaatcgcatgtggtcctcagccctcaatggtttgcgaggaccggtcgaagtatgtgttttgggatccttaccatccttctgatgcttctaatatgatcatagcaaggcgtctcttgtatgggaactccagtgatatttcacccatgaatattgtgcaactcctccaagcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

347

Amino Acids

37.93

Weight (kDa)

8.08

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	616
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	3 cut(s)	644, 926, 939
AcsI	RAATTY	4 cut(s)	282, 595, 668, 752
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	976
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	3 cut(s)	110, 627, 708
AgeI	ACCGGT	1 cut(s)	909
AgsI	TTSAA	3 cut(s)	56, 196, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	5 cut(s)	221, 233, 403, 706, 727
AluI	AGCT	5 cut(s)	221, 233, 403, 706, 727
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	983
AlwI	GGATC	3 cut(s)	644, 926, 939
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	1 cut(s)	747
ApeKI	GCWGC	2 cut(s)	392, 840
ApoI	RAATTY	4 cut(s)	282, 595, 668, 752
AsiGI	ACCGGT	1 cut(s)	909
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	6 cut(s)	236, 602, 711, 747, 881, 907
AsuC2I	CCSGG	3 cut(s)	136, 744, 745
AsuHPI	GGTGA	2 cut(s)	712, 999
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	5 cut(s)	236, 602, 711, 881, 907
BamHI	GGATCC	1 cut(s)	931
BanI	GGYRCC	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	377, 792
Bbv12I	GWGCWC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	404, 827
BccI	CCATC	2 cut(s)	577, 948
BclI	TGATCA	1 cut(s)	963
BcnI	CCSGG	3 cut(s)	136, 744, 745
BcoDI	GTCTC	1 cut(s)	983
BfmI	CTRYAG	2 cut(s)	390, 841
BfoI	RGCGCY	1 cut(s)	859
BglI	GCCNNNNNGGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	2 cut(s)	393, 841
BlsI	GCNGC	2 cut(s)	394, 842
Bme1390I	CCNGG	3 cut(s)	136, 744, 745
Bme18I	GGWCC	5 cut(s)	236, 602, 711, 881, 907
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	6 cut(s)	236, 602, 711, 747, 881, 907
BmiI	GGNNCC	4 cut(s)	468, 713, 748, 933
BmrFI	CCNGG	3 cut(s)	136, 744, 745
BmsI	GCATC	2 cut(s)	319, 940
BoxI	GACNNNNGTC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	377, 792
BpmI	CTGGAG	1 cut(s)	979
Bpu10I	CCTNAGC	2 cut(s)	707, 885
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	3 cut(s)	136, 744, 745
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	976
BsaJI	CCNNGG	3 cut(s)	90, 743, 744
BsaWI	WCCGGW	1 cut(s)	909
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 627, 708
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	3 cut(s)	239, 470, 996
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	90, 743, 744
BseGI	GGATG	2 cut(s)	334, 940
BseLI	CCNNNNNNNGG	3 cut(s)	110, 627, 708
BseMII	CTCAG	5 cut(s)	239, 438, 466, 471, 899
BseNI	ACTGG	3 cut(s)	239, 470, 996
BseRI	GAGGAG	2 cut(s)	198, 1019
BseXI	GCAGC	2 cut(s)	404, 827
Bsh1285I	CGRYCG	1 cut(s)	914
BshFI	GGCC	1 cut(s)	749
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	909
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	4 cut(s)	135, 506, 744, 910
BslI	CCNNNNNNNGG	3 cut(s)	110, 627, 708
BsmAI	GTCTC	1 cut(s)	983
BsmBI	CGTCTC	1 cut(s)	983
BsnI	GGCC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	413, 649, 931, 963
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	1 cut(s)	749
BspCNI	CTCAG	5 cut(s)	240, 437, 465, 472, 898
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	468, 713, 748, 933
BspMAI	CTGCAG	2 cut(s)	394, 845
BspPI	GGATC	3 cut(s)	644, 926, 939
BspT107I	GGYRCC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	909
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	239, 470, 996
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	3 cut(s)	90, 743, 744
BssMI	GATC	4 cut(s)	413, 649, 931, 963
BssNAI	GTATAC	1 cut(s)	617
BssNI	GRCGYC	1 cut(s)	976
BssT1I	CCWWGG	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	617
Bst4CI	ACNGT	3 cut(s)	160, 561, 690
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	976
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	8 cut(s)	217, 248, 407, 424, 452, 480, 707, 885
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	2 cut(s)	334, 940
BstH2I	RGCGCY	1 cut(s)	859
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	4 cut(s)	416, 652, 934, 966
BstMAI	GTCTC	1 cut(s)	983
BstMBI	GATC	4 cut(s)	413, 649, 931, 963
BstMCI	CGRYCG	1 cut(s)	914
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	879
BstPAI	GACNNNNGTC	1 cut(s)	716
BstSCI	CCNGG	3 cut(s)	134, 742, 743
BstSFI	CTRYAG	2 cut(s)	390, 841
BstV1I	GCAGC	2 cut(s)	404, 827
BstV2I	GAAGAC	2 cut(s)	377, 792
BstX2I	RGATCY	3 cut(s)	413, 649, 931
BstYI	RGATCY	3 cut(s)	413, 649, 931
BstZ17I	GTATAC	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	749
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	334, 940
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	2 cut(s)	850, 1003
Cac8I	GCNNGC	1 cut(s)	838
CfoI	GCGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	6 cut(s)	236, 602, 711, 747, 881, 907
Cfr9I	CCCGGG	1 cut(s)	743
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	1 cut(s)	562
CspAI	ACCGGT	1 cut(s)	909
CviAII	CATG	3 cut(s)	325, 876, 1012
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	8 cut(s)	217, 248, 407, 424, 452, 480, 707, 885
DpnI	GATC	4 cut(s)	415, 651, 933, 965
DpnII	GATC	4 cut(s)	413, 649, 931, 963
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	5 cut(s)	236, 602, 711, 881, 907
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoO109I	RGGNCCY	2 cut(s)	602, 711
EcoRI	GAATTC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	983
FaeI	CATG	3 cut(s)	328, 879, 1015
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	3 cut(s)	324, 875, 1011
FauNDI	CATATG	1 cut(s)	811
FbaI	TGATCA	1 cut(s)	963
FblI	GTMKAC	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	393, 841
FokI	GGATG	2 cut(s)	341, 927
Fsp4HI	GCNGC	2 cut(s)	393, 841
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	2 cut(s)	393, 841
GsuI	CTGGAG	1 cut(s)	979
HaeII	RGCGCY	1 cut(s)	859
HaeIII	GGCC	1 cut(s)	749
HapII	CCGG	4 cut(s)	135, 506, 744, 910
HgaI	GACGC	1 cut(s)	965
HhaI	GCGC	1 cut(s)	858
Hin1I	GRCGYC	1 cut(s)	976
Hin1II	CATG	3 cut(s)	328, 879, 1015
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	44, 114, 537, 736
HpaII	CCGG	4 cut(s)	135, 506, 744, 910
HphI	GGTGA	2 cut(s)	712, 999
Hpy166II	GTNNAC	3 cut(s)	204, 259, 617
Hpy188I	TCNGA	5 cut(s)	125, 180, 249, 542, 949
Hpy188III	TCNNGA	3 cut(s)	653, 820, 1041
Hpy8I	GTNNAC	3 cut(s)	204, 259, 617
HpyAV	CCTTC	2 cut(s)	190, 954
HpyCH4III	ACNGT	3 cut(s)	160, 561, 690
HpyCH4V	TGCA	8 cut(s)	152, 332, 350, 392, 533, 575, 843, 1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	8 cut(s)	217, 248, 407, 424, 452, 480, 707, 885
Hsp92I	GRCGYC	1 cut(s)	976
Hsp92II	CATG	3 cut(s)	328, 879, 1015
HspAI	GCGC	1 cut(s)	856
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	4 cut(s)	413, 649, 931, 963
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	404, 827
LweI	GCATC	2 cut(s)	319, 940
MaeIII	GTNAC	3 cut(s)	427, 455, 718
MalI	GATC	4 cut(s)	415, 651, 933, 965
MboI	GATC	4 cut(s)	413, 649, 931, 963
MboII	GAAGA	6 cut(s)	377, 412, 423, 592, 731, 797
MflI	RGATCY	3 cut(s)	413, 649, 931
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	9 cut(s)	28, 243, 282, 343, 565, 595, 668, 680, 752
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	3 cut(s)	288, 486, 593
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	4 cut(s)	135, 506, 744, 910
MspR9I	CCNGG	3 cut(s)	136, 744, 745
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	3 cut(s)	136, 744, 745
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	4 cut(s)	413, 649, 931, 963
NlaIII	CATG	3 cut(s)	328, 879, 1015
NlaIV	GGNNCC	4 cut(s)	468, 713, 748, 933
NmuCI	GTSAC	1 cut(s)	718
NspI	RCATGY	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	44, 114, 537, 736
PinAI	ACCGGT	1 cut(s)	909
PkrI	GCNGC	2 cut(s)	394, 842
PpuMI	RGGWCCY	2 cut(s)	602, 711
PshAI	GACNNNNGTC	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	476
Psp5II	RGGWCCY	2 cut(s)	602, 711
PspN4I	GGNNCC	4 cut(s)	468, 713, 748, 933
PspPI	GGNCC	6 cut(s)	236, 602, 711, 747, 881, 907
PspPPI	RGGWCCY	2 cut(s)	602, 711
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PstI	CTGCAG	2 cut(s)	394, 845
PsuI	RGATCY	3 cut(s)	413, 649, 931
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	288, 486, 593
SatI	GCNGC	2 cut(s)	393, 841
Sau3AI	GATC	4 cut(s)	413, 649, 931, 963
Sau96I	GGNCC	6 cut(s)	236, 602, 711, 747, 881, 907
ScrFI	CCNGG	3 cut(s)	136, 744, 745
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	319, 940
SfcI	CTRYAG	2 cut(s)	390, 841
SinI	GGWCC	5 cut(s)	236, 602, 711, 881, 907
SmaI	CCCGGG	1 cut(s)	745
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	9 cut(s)	28, 243, 282, 343, 565, 595, 668, 680, 752
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	1 cut(s)	1018
StyD4I	CCNGG	3 cut(s)	134, 742, 743
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	160, 561, 690
TaqI	TCGA	3 cut(s)	117, 819, 914
TasI	AATT	9 cut(s)	28, 243, 282, 343, 565, 595, 668, 680, 752
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	4 cut(s)	44, 114, 537, 736
Tru1I	TTAA	3 cut(s)	288, 486, 593
Tru9I	TTAA	3 cut(s)	288, 486, 593
TscAI	CASTG	2 cut(s)	850, 1003
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	2 cut(s)	392, 840
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	2 cut(s)	306, 1028
TspMI	CCCGGG	1 cut(s)	743
TspRI	CASTG	2 cut(s)	850, 1003
VpaK11BI	GGWCC	5 cut(s)	236, 602, 711, 881, 907
XagI	CCTNNNNNAGG	1 cut(s)	625
XapI	RAATTY	4 cut(s)	282, 595, 668, 752
XceI	RCATGY	1 cut(s)	879
XmaI	CCCGGG	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.