Rorug04G0204500

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
35614802 .. 35615368
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0204500.1

Sequence Viewer

Length: 567 bp
ATGTTTCTCAAACAAAATGGTGGTTTATTGCTGGAACAACAATTATCGTCAAGTGAAGTTAATATTGAGAAAATCAAGTTGTTCAAATTCAAGGAGCTAGAGAAGTCCACCAACAATTTCAATATTGATAGAGTTGTTGGCCGAGGAGGTCAAGGTACTGTTTATAAAGGTATGCTTACAGACGGAAGAATCGTTGCTATAAAAAAGTCTGAGATACTTGATGAAGAAAAAGGGTCAGAATTCATCAATGAACTTGTCATTCTATCTCAAACCAACCACAGAAATGTGGTTAGAATATTAGGTTGTTGTTTGGAGACTGAAGTTCCTCTTTTGGTTTATGAATTCATACCTAATGGAACTCTATCGCAGTATATCGAAGATCAGATCAAAGAATCTAAACTTACATGGAAAATGCGCCTACAAATTGCCACAGAAATTGCAGGTGCTCTTTCATACTTACACTCTGCAGTTTCATTTCCCATTTATCATAGAGATATCAAGTCTACAAATATATTGTTAGATGAAAAGTATACTCCAAAGCTTGTCGACTTTGGACGTCAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

6.34

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 41 - 185 7.4e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 41 - 185 4e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AarI CACCTGC 1 cut(s) 431
AatII GACGTC 1 cut(s) 559
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 3 cut(s) 503, 530, 546
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 3 cut(s) 86, 239, 341
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 556
AfaI GTAC 1 cut(s) 157
AgsI TTSAA 3 cut(s) 85, 91, 121
AluBI AGCT 2 cut(s) 97, 541
AluI AGCT 2 cut(s) 97, 541
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 3 cut(s) 86, 239, 341
AspLEI GCGC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 98, 565
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 159
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 2 cut(s) 379, 384
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 379, 384
BssNAI GTATAC 1 cut(s) 531
BssNI GRCGYC 1 cut(s) 556
Bst1107I GTATAC 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 556
BstDEI CTNAG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 2 cut(s) 382, 387
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 379, 384
BstSFI CTRYAG 1 cut(s) 465
BstZ17I GTATAC 1 cut(s) 531
BsuRI GGCC 1 cut(s) 141
BveI ACCTGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 156
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 1 cut(s) 405
CviJI RGCY 3 cut(s) 97, 141, 541
CviKI_1 RGCY 3 cut(s) 97, 141, 541
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 381, 386
DpnII GATC 2 cut(s) 379, 384
EaeI YGGCCR 1 cut(s) 139
Eco32I GATATC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 339
EcoRI GAATTC 2 cut(s) 239, 341
EcoRV GATATC 1 cut(s) 496
FaeI CATG 1 cut(s) 408
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 312, 344
FatI CATG 1 cut(s) 404
FblI GTMKAC 3 cut(s) 503, 530, 546
FspBI CTAG 2 cut(s) 98, 565
GlaI GCGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 141
HhaI GCGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 556
Hin1II CATG 1 cut(s) 408
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 2 cut(s) 189, 392
Hpy166II GTNNAC 4 cut(s) 108, 504, 531, 547
Hpy188I TCNGA 3 cut(s) 211, 238, 384
Hpy188III TCNNGA 1 cut(s) 560
Hpy8I GTNNAC 4 cut(s) 108, 504, 531, 547
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 2 cut(s) 440, 467
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 556
Hsp92I GRCGYC 1 cut(s) 556
Hsp92II CATG 1 cut(s) 408
HspAI GCGC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 379, 384
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 17, 426
MaeI CTAG 2 cut(s) 98, 565
MaeII ACGT 1 cut(s) 556
MalI GATC 2 cut(s) 381, 386
MboI GATC 2 cut(s) 379, 384
MboII GAAGA 3 cut(s) 198, 236, 389
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 7 cut(s) 41, 86, 115, 239, 341, 423, 435
MnlI CCTC 3 cut(s) 137, 140, 336
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 282
NdeII GATC 2 cut(s) 379, 384
NlaIII CATG 1 cut(s) 408
NmeAIII GCCGAG 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 189, 392
PsiI TTATAA 1 cut(s) 165
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 282
SalI GTCGAC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 2 cut(s) 379, 384
SduI GDGCHC 1 cut(s) 448
SetI ASST 9 cut(s) 99, 151, 157, 172, 304, 352, 445, 543, 559
SfcI CTRYAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 7 cut(s) 41, 86, 115, 239, 341, 423, 435
SspI AATATT 3 cut(s) 64, 124, 297
SspMI CTAG 2 cut(s) 98, 565
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 375, 546
TasI AATT 7 cut(s) 41, 86, 115, 239, 341, 423, 435
TfiI GAWTC 2 cut(s) 189, 392
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TspDTI ATGAA 8 cut(s) 232, 237, 264, 334, 354, 441, 462, 537
TspGWI ACGGA 1 cut(s) 198
XapI RAATTY 3 cut(s) 86, 239, 341
XmiI GTMKAC 3 cut(s) 503, 530, 546
XspI CTAG 2 cut(s) 98, 565
ZraI GACGTC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.