Rh4BG267800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001879
Physical Location & Seq
Forward (+)
44144882 .. 44146111
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG267800.1

Sequence Viewer

Length: 879 bp
ATGGGTGGCCTATTTTCAGATGGAAAATTCATTCTTGGCATTGTTTTTGCACTCTGGAGAATGTGTTCAGCAAAAGAAACTCCTGCTAATTTTGTGTTTGGCGATTCTCTAGTTGAAGTGGGGAACAACAACTATATTGTGACTCTCTCCAAGGCTGATTATCCTCCCAATGGAATCGATTTTGGAAAGCCTACCGGGAGATACACAAATGGAAGAACCATCATTGACATTATAGGTCAGACTCTTGGTTTTAAGGGGTTCACTCCTCCTTACTTAGCTCCCACAACAGCTGGACCAGTAATTCTGAGTGGTGTTAACTATGCTTCAGGTGGAGGTGGAATTCTTAATGAAACAGGAAAAATATTTGTTGGTAGAATAAACTTGGATGCACAGATAGATAACTTTGCAAATACCAGGCAAGACATTATCTCAAGAATCGATCTTCCTGCAGCTCTAAAGTTACTTAGAAGAGCTCTGTTCTCAGTAACAATCGGCTCGAATGATTTCATCAATAACTACTTGGCGCCAATTATATCTGAGACGGAGAGGAAGTCGATACCTCCGGAAACCTTTGTTGGCATTTTGATCGCAAGACTCAGACTACAAATTACAAGACTGTACAATTTGGGTGCAAGGAAGATGGTTGTGGTAAATGTAGGACCTATTGGGTGTATACCTTATCAGAGGGAAGTAAATCAAGCTGATCCAGAGAGCTGTGTGGAATTTTCGAATCAACTAGCACGGTCATTCAATGCCAAGCTCAGGACCCTTGTCACCGAGCTAAACAAGAACCTTCCTACGGCCAATTTTGTTTATGCAGATGTTTATAGTATTGTGGAAGACATTATTGAGAACTACATATCATATGGTGAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

292

Amino Acids

31.97

Weight (kDa)

7.61

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 281 7.7e-25 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 562
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 3 cut(s) 26, 339, 722
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 3 cut(s) 170, 762, 799
AgsI TTSAA 2 cut(s) 116, 751
AjnI CCWGG 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 8 cut(s) 278, 290, 452, 473, 701, 714, 760, 781
AluI AGCT 8 cut(s) 278, 290, 452, 473, 701, 714, 760, 781
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 533, 866
AlwI GGATC 1 cut(s) 698
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 2 cut(s) 7, 801
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 3 cut(s) 26, 339, 722
Asp700I GAANNNNTTC 2 cut(s) 64, 503
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 3 cut(s) 293, 659, 765
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 766
AsuII TTCGAA 1 cut(s) 728
AvaII GGWCC 3 cut(s) 293, 659, 765
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 461
BccI CCATC 3 cut(s) 14, 227, 634
BceAI ACGGC 1 cut(s) 816
BcgI CGANNNNNNTGC 4 cut(s) 428, 462, 568, 602
BciT130I CCWGG 1 cut(s) 415
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 533, 866
BfaI CTAG 2 cut(s) 110, 737
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 527
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 196, 415
Bme18I GGWCC 3 cut(s) 293, 659, 765
BmgT120I GGNCC 3 cut(s) 293, 659, 765
BmiI GGNNCC 2 cut(s) 525, 767
BmrFI CCNGG 2 cut(s) 196, 415
BmsI GCATC 1 cut(s) 376
BoxI GACNNNNGTC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 761
Bpu14I TTCGAA 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 196
Bsa29I ATCGAT 2 cut(s) 177, 438
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 536, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 762, 799
Bse1I ACTGG 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 1 cut(s) 415
BseCI ATCGAT 2 cut(s) 177, 438
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 170, 762, 799
BseMII CTCAG 5 cut(s) 296, 495, 528, 610, 775
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 461
BshFI GGCC 2 cut(s) 9, 803
BshNI GGYRCC 1 cut(s) 523
BshVI ATCGAT 2 cut(s) 177, 438
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 195, 563
BslI CCNNNNNNNGG 3 cut(s) 170, 762, 799
BsmAI GTCTC 2 cut(s) 533, 866
BsmBI CGTCTC 1 cut(s) 533
BsnI GGCC 2 cut(s) 9, 803
Bsp119I TTCGAA 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 475
Bsp13I TCCGGA 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 3 cut(s) 439, 585, 703
BspANI GGCC 2 cut(s) 9, 803
BspCNI CTCAG 5 cut(s) 297, 494, 529, 609, 774
BspDI ATCGAT 2 cut(s) 177, 438
BspEI TCCGGA 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 525, 767
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 698
BspQI GCTCTTC 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 728
BspT107I GGYRCC 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 439, 585, 703
BssNAI GTATAC 1 cut(s) 674
BssNI GRCGYC 1 cut(s) 524
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 618, 744
Bst6I CTCTTC 1 cut(s) 463
BstACI GRCGYC 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 728
BstDEI CTNAG 8 cut(s) 274, 305, 464, 481, 537, 596, 761, 876
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 3 cut(s) 442, 588, 706
BstMAI GTCTC 2 cut(s) 533, 866
BstMBI GATC 3 cut(s) 439, 585, 703
BstNI CCWGG 1 cut(s) 415
BstPAI GACNNNNGTC 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 194, 413
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 846
BstZ17I GTATAC 1 cut(s) 674
Bsu15I ATCGAT 2 cut(s) 177, 438
BsuRI GGCC 2 cut(s) 9, 803
BsuTUI ATCGAT 2 cut(s) 177, 438
BtsCI GGATG 1 cut(s) 391
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 293, 659, 765
ClaI ATCGAT 2 cut(s) 177, 438
Csp6I GTAC 1 cut(s) 619
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 8 cut(s) 274, 305, 464, 481, 537, 596, 761, 876
DinI GGCGCC 1 cut(s) 525
DpnI GATC 3 cut(s) 441, 587, 705
DpnII GATC 3 cut(s) 439, 585, 703
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 475
Eco47I GGWCC 3 cut(s) 293, 659, 765
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 473
EcoO109I RGGNCCY 2 cut(s) 659, 765
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 475
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 533
FauNDI CATATG 1 cut(s) 865
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 2 cut(s) 110, 737
GlaI GCGC 1 cut(s) 525
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 2 cut(s) 9, 803
HapII CCGG 2 cut(s) 195, 563
HhaI GCGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 524
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 7 cut(s) 104, 142, 174, 241, 435, 594, 730
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 2 cut(s) 195, 563
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 3 cut(s) 261, 316, 674
Hpy188I TCNGA 6 cut(s) 19, 240, 306, 538, 599, 684
Hpy188III TCNNGA 5 cut(s) 55, 432, 563, 707, 763
Hpy8I GTNNAC 3 cut(s) 261, 316, 674
HpyAV CCTTC 1 cut(s) 803
HpyCH4III ACNGT 2 cut(s) 618, 744
HpyCH4V TGCA 6 cut(s) 50, 389, 407, 449, 632, 818
HpyF3I CTNAG 8 cut(s) 274, 305, 464, 481, 537, 596, 761, 876
Hsp92I GRCGYC 1 cut(s) 524
HspAI GCGC 1 cut(s) 524
KasI GGCGCC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 562
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 439, 585, 703
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 110, 737
MaeIII GTNAC 4 cut(s) 139, 459, 484, 772
MalI GATC 3 cut(s) 441, 587, 705
MboI GATC 3 cut(s) 439, 585, 703
MboII GAAGA 5 cut(s) 225, 434, 480, 649, 851
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 9 cut(s) 26, 88, 300, 339, 528, 606, 622, 722, 805
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 3 cut(s) 136, 235, 588
MnlI CCTC 6 cut(s) 174, 276, 326, 540, 570, 678
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 2 cut(s) 64, 503
MseI TTAA 3 cut(s) 252, 315, 345
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 195, 563
MspR9I CCNGG 2 cut(s) 196, 415
MvaI CCWGG 1 cut(s) 415
NarI GGCGCC 1 cut(s) 524
NciI CCSGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 865
NdeII GATC 3 cut(s) 439, 585, 703
NlaIV GGNNCC 2 cut(s) 525, 767
NmuCI GTSAC 2 cut(s) 139, 772
NspV TTCGAA 1 cut(s) 728
PciSI GCTCTTC 1 cut(s) 463
PdmI GAANNNNTTC 2 cut(s) 64, 503
PfeI GAWTC 4 cut(s) 104, 174, 435, 730
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 3 cut(s) 136, 235, 588
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 3 cut(s) 136, 235, 588
PpuMI RGGWCCY 2 cut(s) 659, 765
PshAI GACNNNNGTC 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 475
Psp5II RGGWCCY 2 cut(s) 659, 765
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 2 cut(s) 525, 767
PspPI GGNCC 3 cut(s) 293, 659, 765
PspPPI RGGWCCY 2 cut(s) 659, 765
PstI CTGCAG 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SacI GAGCTC 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 3 cut(s) 252, 315, 345
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 3 cut(s) 439, 585, 703
Sau96I GGNCC 3 cut(s) 293, 659, 765
SchI GAGTC 3 cut(s) 136, 235, 588
ScrFI CCNGG 2 cut(s) 196, 415
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 447
SfoI GGCGCC 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 728
SinI GGWCC 3 cut(s) 293, 659, 765
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 9 cut(s) 26, 88, 300, 339, 528, 606, 622, 722, 805
SspDI GGCGCC 1 cut(s) 523
SspI AATATT 1 cut(s) 363
SspMI CTAG 2 cut(s) 110, 737
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 194, 413
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 618, 744
TaqI TCGA 5 cut(s) 177, 438, 497, 554, 728
TasI AATT 9 cut(s) 26, 88, 300, 339, 528, 606, 622, 722, 805
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 4 cut(s) 104, 174, 435, 730
Tru1I TTAA 3 cut(s) 252, 315, 345
Tru9I TTAA 3 cut(s) 252, 315, 345
TseFI GTSAC 2 cut(s) 139, 772
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 2 cut(s) 139, 772
TspDTI ATGAA 3 cut(s) 19, 363, 496
TspGWI ACGGA 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 293, 659, 765
XapI RAATTY 3 cut(s) 26, 339, 722
XmiI GTMKAC 1 cut(s) 673
XmnI GAANNNNTTC 2 cut(s) 64, 503
XspI CTAG 2 cut(s) 110, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.