Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

5480034 .. 5482808

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCAGTACGTTTCAAAGATCAAGGGGTGGCGCTAGTGAGACTTGAAGGCCTTGCGGCTATGTGGGAAGCCGAGCTCGTGGTGAAGCTTGTCTGCGTCGTCGAGGCAGAGGATGCAGTGGGGCTGTTTCAAGAGGAAGTCTTTGGATTTGGTGAGGAACCGGAAGTGGGTGTTGATCTCGAACTTTCCGAGTCCAATGGAGTCCTCGTCGATGCTTTGAACTTCAACCGCACCTACTATGTCAATCAACTCTTTTGCATATTGGATTTCCATAACCCGAACCCGATCCAGCTAGCGGACCCGGGGATCGAGGACCCACCGCTTTGTACGGCTGTGATCGAGTCGCAGTACACTACGTCCGGCAACGTGGAGGTTCTGCTTGCGATTTTGGAGCCTTGCGTTTTGGCTATGGAGGAAGACAGTGTGCAACAGTTAGAGTACGCTCCAATGGATGAGTATGATTTTAGGAGAAAGTGGTTTGTTGGTGTTTTGGTTAGAAAATATTGCATATCCGAAATTGACTCGAGGAACTGCAAATTAAATGAGGAAGGATCTGCTCTTGATCCGTCAATTGATGGTGATGGTAGCGAGTGGCGCAGTGGCCAGATTGCTTCTATTGGAGGTGGTGGTGCTTGGAGGCGGGTCTGTGTGAGTCTAAATAGTGAATTTGGTGGGCTGACGGCTTCGCTTTCTTCTCAAATTCCTCGTTTTCCAGCGGTGGCTATGGCGCTGGCCGGTGCAGTGCCATCTCTGAGTGTGAGTTGGATCTTGCCAACGATGAAGGTGCTGGGTCGGATTGAGGGTTGCGACGTGGACAACAAAATATTCTCCGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

280

Amino Acids

30.38

Weight (kDa)

4.26

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	56, 229, 296, 320, 640, 716, 834
AclWI	GGATC	5 cut(s)	280, 314, 557, 559, 773
AcoI	YGGCCR	2 cut(s)	601, 732
AcsI	RAATTY	2 cut(s)	665, 699
AfaI	GTAC	4 cut(s)	9, 328, 350, 440
AfiI	CCNNNNNNNGG	2 cut(s)	167, 295
AgsI	TTSAA	5 cut(s)	16, 47, 131, 220, 226
AjiI	CACGTC	1 cut(s)	811
AluBI	AGCT	3 cut(s)	76, 88, 292
AluI	AGCT	3 cut(s)	76, 88, 292
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	5 cut(s)	280, 314, 557, 559, 773
Ama87I	CYCGRG	2 cut(s)	301, 523
AoxI	GGCC	3 cut(s)	49, 601, 732
ApoI	RAATTY	2 cut(s)	665, 699
AspLEI	GCGC	3 cut(s)	34, 597, 730
AspS9I	GGNCC	2 cut(s)	298, 313
AsuC2I	CCSGG	2 cut(s)	302, 303
AsuHPI	GGTGA	3 cut(s)	94, 164, 590
AsuNHI	GCTAGC	1 cut(s)	292
AvaI	CYCGRG	2 cut(s)	301, 523
AvaII	GGWCC	2 cut(s)	298, 313
BalI	TGGCCA	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	3 cut(s)	569, 575, 754
BceAI	ACGGC	2 cut(s)	345, 696
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BcnI	CCSGG	2 cut(s)	302, 303
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	3 cut(s)	35, 293, 838
BfoI	RGCGCY	2 cut(s)	35, 731
BisI	GCNGC	2 cut(s)	57, 835
BlsI	GCNGC	2 cut(s)	58, 836
Bme1390I	CCNGG	2 cut(s)	302, 303
Bme18I	GGWCC	2 cut(s)	298, 313
BmeT110I	CYCGRG	2 cut(s)	301, 523
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	298, 313
BmiI	GGNNCC	4 cut(s)	159, 300, 315, 393
BmrFI	CCNGG	2 cut(s)	302, 303
BmsI	GCATC	2 cut(s)	103, 202
BmtI	GCTAGC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	302, 303
BsaJI	CCNNGG	2 cut(s)	301, 302
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 295
Bse118I	RCCGGY	1 cut(s)	734
Bse1I	ACTGG	1 cut(s)	5
BseDI	CCNNGG	2 cut(s)	301, 302
BseGI	GGATG	2 cut(s)	118, 457
BseLI	CCNNNNNNNGG	2 cut(s)	167, 295
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	1 cut(s)	5
BseYI	CCCAGC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	759
BshFI	GGCC	3 cut(s)	51, 603, 734
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	2 cut(s)	301, 523
BsiSI	CCGG	5 cut(s)	161, 302, 360, 735, 831
BslI	CCNNNNNNNGG	2 cut(s)	167, 295
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	51, 603, 734
BsoBI	CYCGRG	2 cut(s)	301, 523
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
BspACI	CCGC	7 cut(s)	56, 229, 296, 320, 640, 716, 834
BspANI	GGCC	3 cut(s)	51, 603, 734
BspCNI	CTCAG	1 cut(s)	744
BspLI	GGNNCC	4 cut(s)	159, 300, 315, 393
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	5 cut(s)	280, 314, 557, 559, 773
BsrFI	RCCGGY	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	734
BssECI	CCNNGG	2 cut(s)	301, 302
BssMI	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	422, 432
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	294, 381, 732
BstDEI	CTNAG	1 cut(s)	752
BstF5I	GGATG	2 cut(s)	118, 457
BstH2I	RGCGCY	2 cut(s)	35, 731
BstHHI	GCGC	3 cut(s)	34, 597, 730
BstKTI	GATC	8 cut(s)	22, 178, 288, 309, 339, 554, 565, 768
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 594
BstSCI	CCNGG	2 cut(s)	300, 301
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	2 cut(s)	551, 765
BstYI	RGATCY	2 cut(s)	551, 765
BsuRI	GGCC	3 cut(s)	51, 603, 734
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	2 cut(s)	118, 457
BtsI	GCAGTG	3 cut(s)	123, 604, 747
BtsIMutI	CAGTG	4 cut(s)	123, 427, 604, 747
Cac8I	GCNNGC	3 cut(s)	294, 381, 732
CfoI	GCGC	3 cut(s)	34, 597, 730
Cfr10I	RCCGGY	1 cut(s)	734
Cfr13I	GGNCC	2 cut(s)	298, 313
Cfr9I	CCCGGG	1 cut(s)	301
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	4 cut(s)	8, 327, 349, 439
CviQI	GTAC	4 cut(s)	8, 327, 349, 439
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	8 cut(s)	21, 177, 287, 308, 338, 553, 564, 767
DpnII	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
EaeI	YGGCCR	2 cut(s)	601, 732
Ecl136II	GAGCTC	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	298, 313
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	2 cut(s)	301, 523
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	78
FaiI	YATR	8 cut(s)	62, 240, 260, 273, 410, 459, 509, 725
FauI	CCCGC	1 cut(s)	633
Fnu4HI	GCNGC	2 cut(s)	57, 835
FokI	GGATG	2 cut(s)	125, 464
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	57, 835
FspBI	CTAG	3 cut(s)	35, 293, 838
GlaI	GCGC	3 cut(s)	33, 596, 729
GluI	GCNGC	2 cut(s)	57, 835
GsaI	CCCAGC	1 cut(s)	791
HaeII	RGCGCY	2 cut(s)	35, 731
HaeIII	GGCC	3 cut(s)	51, 603, 734
HapII	CCGG	5 cut(s)	161, 302, 360, 735, 831
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	3 cut(s)	34, 597, 730
Hin6I	GCGC	3 cut(s)	32, 595, 728
HinP1I	GCGC	3 cut(s)	32, 595, 728
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	5 cut(s)	191, 201, 341, 521, 652
HpaII	CCGG	5 cut(s)	161, 302, 360, 735, 831
HphI	GGTGA	3 cut(s)	94, 164, 590
Hpy166II	GTNNAC	2 cut(s)	351, 814
Hpy188I	TCNGA	4 cut(s)	190, 514, 753, 795
Hpy188III	TCNNGA	3 cut(s)	131, 179, 560
Hpy8I	GTNNAC	2 cut(s)	351, 814
Hpy99I	CGWCG	4 cut(s)	101, 104, 212, 812
HpyAV	CCTTC	3 cut(s)	41, 542, 775
HpyCH4III	ACNGT	2 cut(s)	422, 432
HpyCH4IV	ACGT	4 cut(s)	10, 356, 366, 810
HpyCH4V	TGCA	6 cut(s)	116, 258, 427, 507, 534, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 594
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	4 cut(s)	10, 356, 366, 810
HspAI	GCGC	3 cut(s)	32, 595, 728
Kzo9I	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
LmnI	GCTCC	2 cut(s)	391, 448
LweI	GCATC	2 cut(s)	103, 202
MaeI	CTAG	3 cut(s)	35, 293, 838
MaeII	ACGT	4 cut(s)	10, 356, 366, 810
MalI	GATC	8 cut(s)	21, 177, 287, 308, 338, 553, 564, 767
MboI	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
MboII	GAAGA	2 cut(s)	428, 684
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	2 cut(s)	551, 765
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	5 cut(s)	516, 536, 570, 665, 699
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	5 cut(s)	200, 210, 350, 515, 661
MmeI	TCCRAC	2 cut(s)	743, 773
Mox20I	TGGCCA	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	5 cut(s)	161, 302, 360, 735, 831
MspR9I	CCNGG	2 cut(s)	302, 303
MunI	CAATTG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	113, 594
NciI	CCSGG	2 cut(s)	302, 303
NdeII	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
NheI	GCTAGC	1 cut(s)	292
NlaIV	GGNNCC	4 cut(s)	159, 300, 315, 393
NmeAIII	GCCGAG	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	58, 836
PleI	GAGTC	5 cut(s)	199, 209, 349, 515, 660
PpsI	GAGTC	5 cut(s)	199, 209, 349, 515, 660
PpuMI	RGGWCCY	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	787
PspN4I	GGNNCC	4 cut(s)	159, 300, 315, 393
PspPI	GGNCC	2 cut(s)	298, 313
PspPPI	RGGWCCY	1 cut(s)	313
PspXI	VCTCGAGB	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	551, 765
RsaI	GTAC	4 cut(s)	9, 328, 350, 440
RsaNI	GTAC	4 cut(s)	8, 327, 349, 439
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	2 cut(s)	57, 835
Sau3AI	GATC	8 cut(s)	19, 175, 285, 306, 336, 551, 562, 765
Sau96I	GGNCC	2 cut(s)	298, 313
SchI	GAGTC	5 cut(s)	200, 210, 350, 515, 661
ScrFI	CCNGG	2 cut(s)	302, 303
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	2 cut(s)	103, 202
Sfr274I	CTCGAG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	298, 313
SlaI	CTCGAG	1 cut(s)	523
SmaI	CCCGGG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	5 cut(s)	516, 536, 570, 665, 699
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	7 cut(s)	56, 229, 296, 320, 640, 716, 834
SspI	AATATT	2 cut(s)	503, 825
SspMI	CTAG	3 cut(s)	35, 293, 838
SstI	GAGCTC	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	300, 301
TaaI	ACNGT	2 cut(s)	422, 432
TaiI	ACGT	4 cut(s)	13, 359, 369, 813
TaqI	TCGA	6 cut(s)	102, 180, 210, 309, 339, 524
TasI	AATT	5 cut(s)	516, 536, 570, 665, 699
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	2 cut(s)	59, 837
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	4 cut(s)	123, 427, 604, 747
TspDTI	ATGAA	1 cut(s)	794
TspGWI	ACGGA	1 cut(s)	555
TspMI	CCCGGG	1 cut(s)	301
TspRI	CASTG	4 cut(s)	123, 427, 604, 747
VpaK11BI	GGWCC	2 cut(s)	298, 313
XapI	RAATTY	2 cut(s)	665, 699
XhoI	CTCGAG	1 cut(s)	523
XmaI	CCCGGG	1 cut(s)	301
XspI	CTAG	3 cut(s)	35, 293, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.