Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

35196201 .. 35198166

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0202900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGTGCCCCCGAGAAGAAAGAAATGGACGGAGGCCGAGGAGAGGACTCTGATCGATAAATACGGGGAGATGGTGGCTGATGGGACCCTGGCTAAGATGAAGACTAGAGAGAAGAAGTTCAAACCCATTGCTTATTATGTGAATTCTGTGCACTATGTTCAAGACCCTGTTGCCTACCGCTGGCAGTGGTCGTGGAAAGATGTGTCCACTAAGGTCCAGAACATGAGGCACCAGTATCTGCTTGTCAAGCAGAAGATTAAGAAGCAGCAGCAGCCGGAGAGTAATTCCGGCGGCGGCGGTGGGGATAGTAGTGGGGAGTGTGGTGTGGAGGAGTTTGATTGGATGGAGGGGCTTACGCATTGGGCTAATTTCTTGAGGTATAAGGAGGTTTTTGGGGATATTGTGGGTAGTAATGGGAATGATTTGATGGGGGGTGGAAATGGGGATTGTGAGAATGTTGGGGGGTTTGTGGGAGGTGGGAGGGGAATGGAGATTTCGGAGTTTGGGCAGATGGGACATTCGGATGGGGATTTCGGGGGAGGGATTGATAATGGGATGATGGGGTTGGGGTTTGAGTATGATGGGGAGGAGGGAGGTGAGAATTTTAATGGGGATGTTAGGGTGAGGGAGGATGGAGATGGGAGGTTTGTGTGTGAGGAAGTGGAGCAGAATGGTTCTAGTTTAAAGAAGAAGAGGAAGAGGGACGTTTCGACCGCGTTGGGAAAGAAGGCATGGGCCTTTATTGGTAACCAGCTCGGAAAGTTGAGGGAAATGGAGGCTCGGTTTGAACAGCGTGAGGCGGAGAGGGAAAGGGAGAGACAGAGGAGTGAGAGTTTTAGAATGGAGTGTGAGCAAGAACGGGAATGGAAATGGGGGGAATGGGTGAAGAAGAAGGAGGAGAAAGAAAAGGCAAGGGAGCAGTTGAAGAAGCAGAGGATTCAAGAATGGGAAGGATTCGAGAAGGACAGTGAGGAGAGAGAGAGAAGAGGAAGAGAAGAAGCGTTGATTAATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGGTCAGAATGGAAGAAGAGGATGGATGATATGTTGGGTCACCACCGGGCAGAGATGGGCCAGATGCAGACTCGCATTCTCCATGAGCAGCAAAATCTTACTAGCCAGTTACTGGGGATTGTCTCTCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATACCGGTGCAAGCAACCATTATTTATCACAGATGATGCAGAATTTGCACCATGTGAATAGTTTGGATCATGACGATGCTAGGGTTGATGGAGATAATCAAGATGATCAGTTCATTGTTGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

443

Amino Acids

51.33

Weight (kDa)

5.63

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 228
AccB7I	CCANNNNNTGG	1 cut(s)	1156
AccII	CGCG	1 cut(s)	716
AciI	CCGC	6 cut(s)	178, 291, 294, 297, 714, 800
AclWI	GGATC	1 cut(s)	1278
AcsI	RAATTY	3 cut(s)	142, 601, 1246
AdeI	CACNNNGTG	1 cut(s)	1258
AfiI	CCNNNNNNNGG	3 cut(s)	42, 180, 1156
AgeI	ACCGGT	1 cut(s)	1208
AgsI	TTSAA	5 cut(s)	121, 161, 788, 925, 941
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	754, 1190
AluI	AGCT	2 cut(s)	754, 1190
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	811, 1171
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	1278
AlwNI	CAGNNNCTG	2 cut(s)	238, 1156
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	3 cut(s)	33, 735, 1102
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	265, 268, 271, 1132
ApoI	RAATTY	3 cut(s)	142, 601, 1246
AseI	ATTAAT	1 cut(s)	1008
AsiGI	ACCGGT	1 cut(s)	1208
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	4 cut(s)	84, 214, 735, 1102
AsuC2I	CCSGG	1 cut(s)	1091
AsuHPI	GGTGA	4 cut(s)	608, 634, 895, 1076
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	84, 214
BaeGI	GKGCMC	2 cut(s)	9, 153
BanI	GGYRCC	2 cut(s)	4, 228
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	4 cut(s)	277, 280, 283, 1144
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	2 cut(s)	1201, 1309
BcnI	CCSGG	1 cut(s)	1091
BcoDI	GTCTC	2 cut(s)	811, 1171
BfaI	CTAG	4 cut(s)	105, 678, 1146, 1284
BisI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1133
BlsI	GCNGC	6 cut(s)	267, 270, 273, 293, 296, 1134
Bme1390I	CCNGG	2 cut(s)	89, 1091
Bme18I	GGWCC	2 cut(s)	84, 214
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	4 cut(s)	84, 214, 735, 1102
BmiI	GGNNCC	4 cut(s)	6, 85, 86, 230
BmrFI	CCNGG	2 cut(s)	89, 1091
BmrI	ACTGGG	1 cut(s)	1166
BmsI	GCATC	3 cut(s)	1098, 1230, 1270
BmuI	ACTGGG	1 cut(s)	1166
BpiI	GAAGAC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	1091
Bsa29I	ATCGAT	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	36, 87
BsaWI	WCCGGW	1 cut(s)	1208
BsaXI	ACNNNNNCTCC	4 cut(s)	767, 797, 817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 180, 1156
Bse118I	RCCGGY	1 cut(s)	1208
Bse1I	ACTGG	3 cut(s)	232, 1150, 1161
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	36, 87
BseGI	GGATG	9 cut(s)	348, 529, 561, 619, 637, 1038, 1071, 1075, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	42, 180, 1156
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	1184
BseNI	ACTGG	3 cut(s)	232, 1150, 1161
BseRI	GAGGAG	8 cut(s)	53, 344, 602, 838, 911, 986, 1040, 1057
BseSI	GKGCMC	2 cut(s)	9, 153
BseXI	GCAGC	4 cut(s)	277, 280, 283, 1144
Bsh1236I	CGCG	1 cut(s)	716
Bsh1285I	CGRYCG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	35, 737, 1104
BshNI	GGYRCC	2 cut(s)	4, 228
BshTI	ACCGGT	1 cut(s)	1208
BshVI	ATCGAT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	4 cut(s)	275, 288, 1090, 1209
BslFI	GGGAC	3 cut(s)	97, 528, 716
BslI	CCNNNNNNNGG	3 cut(s)	42, 180, 1156
BsmAI	GTCTC	2 cut(s)	811, 1171
BsmFI	GGGAC	3 cut(s)	97, 528, 716
BsmI	GAATGC	1 cut(s)	1119
BsnI	GGCC	3 cut(s)	35, 737, 1104
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	9, 153
Bsp143I	GATC	4 cut(s)	51, 1201, 1270, 1309
BspACI	CCGC	6 cut(s)	178, 291, 294, 297, 714, 800
BspANI	GGCC	3 cut(s)	35, 737, 1104
BspCNI	CTCAG	1 cut(s)	1183
BspDI	ATCGAT	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	716
BspHI	TCATGA	1 cut(s)	1273
BspLI	GGNNCC	4 cut(s)	6, 85, 86, 230
BspPI	GGATC	1 cut(s)	1278
BspT107I	GGYRCC	2 cut(s)	4, 228
BsrDI	GCAATG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	1208
BsrI	ACTGG	3 cut(s)	232, 1150, 1161
BssAI	RCCGGY	1 cut(s)	1208
BssECI	CCNNGG	2 cut(s)	36, 87
BssMI	GATC	4 cut(s)	51, 1201, 1270, 1309
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	968, 1197
Bst6I	CTCTTC	5 cut(s)	686, 692, 979, 985, 1055
BstAPI	GCANNNNNTGC	1 cut(s)	1249
BstC8I	GCNNGC	2 cut(s)	182, 1216
BstDEI	CTNAG	3 cut(s)	93, 210, 1170
BstEII	GGTNACC	2 cut(s)	746, 1082
BstF5I	GGATG	9 cut(s)	348, 529, 561, 619, 637, 1038, 1071, 1075, 1183
BstFNI	CGCG	1 cut(s)	716
BstKTI	GATC	4 cut(s)	54, 1204, 1273, 1312
BstMAI	GTCTC	2 cut(s)	811, 1171
BstMBI	GATC	4 cut(s)	51, 1201, 1270, 1309
BstMCI	CGRYCG	1 cut(s)	714
BstMWI	GCNNNNNNNGC	4 cut(s)	247, 271, 1187, 1249
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	2 cut(s)	746, 1082
BstSCI	CCNGG	2 cut(s)	87, 1089
BstSLI	GKGCMC	2 cut(s)	9, 153
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	4 cut(s)	277, 280, 283, 1144
BstV2I	GAAGAC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	35, 737, 1104
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	9 cut(s)	348, 529, 561, 619, 637, 1038, 1071, 1075, 1183
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	3 cut(s)	191, 973, 1178
Cac8I	GCNNGC	2 cut(s)	182, 1216
CaiI	CAGNNNCTG	2 cut(s)	238, 1156
CciI	TCATGA	1 cut(s)	1273
Cfr10I	RCCGGY	1 cut(s)	1208
Cfr13I	GGNCC	4 cut(s)	84, 214, 735, 1102
ClaI	ATCGAT	1 cut(s)	54
CspAI	ACCGGT	1 cut(s)	1208
CviAII	CATG	5 cut(s)	223, 732, 1127, 1256, 1274
DdeI	CTNAG	3 cut(s)	93, 210, 1170
DpnI	GATC	4 cut(s)	53, 1203, 1272, 1311
DpnII	GATC	4 cut(s)	51, 1201, 1270, 1309
DraI	TTTAAA	1 cut(s)	684
DraIII	CACNNNGTG	1 cut(s)	1258
Eam1104I	CTCTTC	5 cut(s)	686, 692, 979, 985, 1055
EarI	CTCTTC	5 cut(s)	686, 692, 979, 985, 1055
EciI	GGCGGA	1 cut(s)	815
Eco47I	GGWCC	2 cut(s)	84, 214
Eco88I	CYCGRG	1 cut(s)	10
Eco91I	GGTNACC	2 cut(s)	746, 1082
EcoO109I	RGGNCCY	1 cut(s)	84
EcoO65I	GGTNACC	2 cut(s)	746, 1082
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	226, 735, 1130, 1259, 1277
FaqI	GGGAC	3 cut(s)	97, 528, 716
FatI	CATG	5 cut(s)	222, 731, 1126, 1255, 1273
FbaI	TGATCA	2 cut(s)	1201, 1309
Fnu4HI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1133
FokI	GGATG	9 cut(s)	355, 536, 568, 626, 644, 1045, 1078, 1082, 1170
Fsp4HI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1133
FspBI	CTAG	4 cut(s)	105, 678, 1146, 1284
GluI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1133
HaeIII	GGCC	3 cut(s)	35, 737, 1104
HapII	CCGG	4 cut(s)	275, 288, 1090, 1209
Hin1II	CATG	5 cut(s)	226, 735, 1130, 1259, 1277
HincII	GTYRAC	1 cut(s)	1324
HindII	GTYRAC	1 cut(s)	1324
HinfI	GANTC	4 cut(s)	46, 937, 954, 1114
HpaII	CCGG	4 cut(s)	275, 288, 1090, 1209
HphI	GGTGA	4 cut(s)	608, 634, 895, 1076
Hpy166II	GTNNAC	4 cut(s)	151, 207, 1176, 1324
Hpy188I	TCNGA	6 cut(s)	51, 499, 523, 758, 1051, 1201
Hpy188III	TCNNGA	7 cut(s)	161, 217, 373, 941, 958, 1274, 1304
Hpy8I	GTNNAC	4 cut(s)	151, 207, 1176, 1324
HpyAV	CCTTC	4 cut(s)	721, 886, 944, 955
HpyCH4III	ACNGT	2 cut(s)	968, 1197
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	5 cut(s)	151, 1111, 1214, 1243, 1252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	247, 271, 1187, 1249
HpyF3I	CTNAG	3 cut(s)	93, 210, 1170
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	5 cut(s)	226, 735, 1130, 1259, 1277
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	1201, 1309
Kzo9I	GATC	4 cut(s)	51, 1201, 1270, 1309
LmnI	GCTCC	2 cut(s)	664, 916
Lsp1109I	GCAGC	4 cut(s)	277, 280, 283, 1144
LweI	GCATC	3 cut(s)	1098, 1230, 1270
MaeI	CTAG	4 cut(s)	105, 678, 1146, 1284
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	3 cut(s)	746, 1082, 1152
MalI	GATC	4 cut(s)	53, 1203, 1272, 1311
MboI	GATC	4 cut(s)	51, 1201, 1270, 1309
MhlI	GDGCHC	2 cut(s)	9, 153
MluCI	AATT	5 cut(s)	142, 283, 367, 601, 1246
MlyI	GAGTC	2 cut(s)	40, 1108
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	4 cut(s)	258, 606, 683, 1008
MslI	CAYNNNNRTG	3 cut(s)	522, 1209, 1278
MspA1I	CMGCKG	2 cut(s)	180, 1190
MspI	CCGG	4 cut(s)	275, 288, 1090, 1209
MspR9I	CCNGG	2 cut(s)	89, 1091
Mva1269I	GAATGC	1 cut(s)	1119
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	4 cut(s)	247, 271, 1187, 1249
NciI	CCSGG	1 cut(s)	1091
NdeII	GATC	4 cut(s)	51, 1201, 1270, 1309
NlaIII	CATG	5 cut(s)	226, 735, 1130, 1259, 1277
NlaIV	GGNNCC	4 cut(s)	6, 85, 86, 230
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	1082
PagI	TCATGA	1 cut(s)	1273
PctI	GAATGC	1 cut(s)	1119
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	937, 954
PflMI	CCANNNNNTGG	1 cut(s)	1156
PinAI	ACCGGT	1 cut(s)	1208
PkrI	GCNGC	6 cut(s)	267, 270, 273, 293, 296, 1134
PleI	GAGTC	2 cut(s)	40, 1108
PpsI	GAGTC	2 cut(s)	40, 1108
PpuMI	RGGWCCY	1 cut(s)	84
PshBI	ATTAAT	1 cut(s)	1008
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	2 cut(s)	746, 1082
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	6, 85, 86, 230
PspPI	GGNCC	4 cut(s)	84, 214, 735, 1102
PspPPI	RGGWCCY	1 cut(s)	84
PstNI	CAGNNNCTG	2 cut(s)	238, 1156
PvuII	CAGCTG	1 cut(s)	1190
RseI	CAYNNNNRTG	3 cut(s)	522, 1209, 1278
SaqAI	TTAA	4 cut(s)	258, 606, 683, 1008
SatI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1133
Sau3AI	GATC	4 cut(s)	51, 1201, 1270, 1309
Sau96I	GGNCC	4 cut(s)	84, 214, 735, 1102
SchI	GAGTC	2 cut(s)	40, 1108
ScrFI	CCNGG	2 cut(s)	89, 1091
SduI	GDGCHC	2 cut(s)	9, 153
SfaNI	GCATC	3 cut(s)	1098, 1230, 1270
SinI	GGWCC	2 cut(s)	84, 214
SmiMI	CAYNNNNRTG	3 cut(s)	522, 1209, 1278
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	5 cut(s)	142, 283, 367, 601, 1246
SsiI	CCGC	6 cut(s)	178, 291, 294, 297, 714, 800
SspMI	CTAG	4 cut(s)	105, 678, 1146, 1284
StyD4I	CCNGG	2 cut(s)	87, 1089
TaaI	ACNGT	2 cut(s)	968, 1197
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	3 cut(s)	54, 710, 957
TasI	AATT	5 cut(s)	142, 283, 367, 601, 1246
TauI	GCSGC	2 cut(s)	294, 297
TfiI	GAWTC	2 cut(s)	937, 954
Tru1I	TTAA	4 cut(s)	258, 606, 683, 1008
Tru9I	TTAA	4 cut(s)	258, 606, 683, 1008
TscAI	CASTG	3 cut(s)	191, 973, 1178
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	4 cut(s)	265, 268, 271, 1132
Tsp45I	GTSAC	1 cut(s)	1082
TspDTI	ATGAA	3 cut(s)	113, 1049, 1306
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	3 cut(s)	191, 973, 1178
Van91I	CCANNNNNTGG	1 cut(s)	1156
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	84, 214
VspI	ATTAAT	1 cut(s)	1008
XapI	RAATTY	3 cut(s)	142, 601, 1246
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	4 cut(s)	105, 678, 1146, 1284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.