Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004566.1

Orthogroup ID

OG0001879

Physical Location & Seq

Genomic Coordinates Forward (+)

21069 .. 22070

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004566.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtgcagcaagggcttccacttccacttcgacatgcagcccaaattccaatttcggtttcagatttcaacgtgcaacacggatttcaagaccccgaacccagtccagcttgccgacccggtgatcgaggacccaccgctttgtatagtagtgatcgagccgcagtacactatgtccaacaatgtagaggttctgcttgcgattttggacccttgggttttggccttggaggaagacggcgtgcaacagttagggagaagtctggtggtggtggcaggtgactggattcgggtgaaagttggccgaaatcaggtggccggtaaatggaatccgacgaacggtgacgggaatcagggggccggtgacgggaatcctgcgaagagtcttattgtttctctctctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

135

Amino Acids

14.85

Weight (kDa)

4.96

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16220 AT4G16230
fragaria_vesca	FvH4_4g19851 FvH4_4g19871 FvH4_4g19872 FvH4_4g19872 FvH4_4g19872
rosa_chinensis	RchiOBHm_Chr4g0425431 RchiOBHm_Chr4g0425441 RchiOBHm_Chr4g0425461 RchiOBHm_Chr4g0425491 RchiOBHm_Chr4g0425641
rosa_laevigata	RLG00000007351 RLG00000007369 RLG00000031471
rosa_multiflora	Rmu_sc0001900.1_g000024 Rmu_sc0001900.1_g000036 Rmu_sc0003958.1_g000016 Rmu_sc0004566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00064710 Rroxscaffold_5G00367410 Rroxscaffold_5G00367420 Rroxscaffold_5G00367580 Rroxscaffold_6G00425630
rosa_rugosa	Rorug04G0202900 Rorug04G0203000 Rorug04G0203400 Rorug04G0204500 Rorug04G0204600
rosa_samantha	Rh3BG001300 Rh4AG260100 Rh4AG260200 Rh4AG261800 Rh4BG265900 Rh4BG266000 Rh4BG267800 Rh4CG277300 Rh4CG277500 Rh4CG278900 Rh4DG262100 Rh4DG262200 Rh4DG262500 Rh4DG263600
rosa_wichuraiana	Rw4G022530 Rw4G022540 Rw4G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	2 cut(s)	137, 161
AcoI	YGGCCR	2 cut(s)	301, 315
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	4 cut(s)	310, 324, 338, 366
AgsI	TTSAA	2 cut(s)	69, 88
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AoxI	GGCC	4 cut(s)	222, 301, 315, 357
ApeKI	GCWGC	2 cut(s)	6, 37
ApoI	RAATTY	1 cut(s)	44
AspS9I	GGNCC	3 cut(s)	130, 208, 357
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	5 cut(s)	133, 290, 304, 353, 374
AvaII	GGWCC	2 cut(s)	130, 208
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	18, 49
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	7, 38, 161
BlsI	GCNGC	3 cut(s)	8, 39, 162
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	130, 208
BmgT120I	GGNCC	3 cut(s)	130, 208, 357
BmiI	GGNNCC	3 cut(s)	132, 210, 358
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	212, 225
Bsc4I	CCNNNNNNNGG	4 cut(s)	310, 324, 338, 366
Bse118I	RCCGGY	2 cut(s)	317, 359
Bse1I	ACTGG	2 cut(s)	101, 287
BseDI	CCNNGG	2 cut(s)	212, 225
BseLI	CCNNNNNNNGG	4 cut(s)	310, 324, 338, 366
BseNI	ACTGG	2 cut(s)	101, 287
BseXI	GCAGC	2 cut(s)	18, 49
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	4 cut(s)	224, 303, 317, 359
BsiSI	CCGG	3 cut(s)	119, 318, 360
BslI	CCNNNNNNNGG	4 cut(s)	310, 324, 338, 366
BsnI	GGCC	4 cut(s)	224, 303, 317, 359
Bsp143I	GATC	2 cut(s)	123, 153
BspACI	CCGC	2 cut(s)	137, 161
BspANI	GGCC	4 cut(s)	224, 303, 317, 359
BspLI	GGNNCC	3 cut(s)	132, 210, 358
BspMI	ACCTGC	1 cut(s)	266
BsrFI	RCCGGY	2 cut(s)	317, 359
BsrI	ACTGG	2 cut(s)	101, 287
BssAI	RCCGGY	2 cut(s)	317, 359
BssECI	CCNNGG	2 cut(s)	212, 225
BssMI	GATC	2 cut(s)	123, 153
BssT1I	CCWWGG	2 cut(s)	212, 225
Bst4CI	ACNGT	2 cut(s)	249, 341
Bst6I	CTCTTC	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	111, 198, 242
BstKTI	GATC	2 cut(s)	126, 156
BstMBI	GATC	2 cut(s)	123, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	18, 49
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	224, 303, 317, 359
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	111, 198, 242
Cfr10I	RCCGGY	2 cut(s)	317, 359
Cfr13I	GGNCC	3 cut(s)	130, 208, 357
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	8 cut(s)	15, 40, 109, 160, 224, 303, 317, 359
CviKI_1	RGCY	8 cut(s)	15, 40, 109, 160, 224, 303, 317, 359
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	2 cut(s)	125, 155
DpnII	GATC	2 cut(s)	123, 153
EaeI	YGGCCR	2 cut(s)	301, 315
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	212, 225
Eco47I	GGWCC	2 cut(s)	130, 208
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	212, 225
ErhI	CCWWGG	2 cut(s)	212, 225
FaeI	CATG	1 cut(s)	37
FaiI	YATR	3 cut(s)	35, 146, 173
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	7, 38, 161
Fsp4HI	GCNGC	3 cut(s)	7, 38, 161
GluI	GCNGC	3 cut(s)	7, 38, 161
HaeIII	GGCC	4 cut(s)	224, 303, 317, 359
HapII	CCGG	3 cut(s)	119, 318, 360
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	5 cut(s)	286, 328, 349, 370, 382
HpaII	CCGG	3 cut(s)	119, 318, 360
HphI	GGTGA	5 cut(s)	133, 290, 304, 353, 374
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	63, 333
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	249, 341
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	4 cut(s)	6, 37, 75, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	123, 153
Lsp1109I	GCAGC	2 cut(s)	18, 49
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	278, 341, 362
MalI	GATC	2 cut(s)	125, 155
MboI	GATC	2 cut(s)	123, 153
MboII	GAAGA	2 cut(s)	245, 391
MluCI	AATT	2 cut(s)	44, 50
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	2 cut(s)	201, 356
MnlI	CCTC	3 cut(s)	121, 181, 223
MspI	CCGG	3 cut(s)	119, 318, 360
MspR9I	CCNGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	123, 153
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	3 cut(s)	132, 210, 358
NmuCI	GTSAC	3 cut(s)	278, 341, 362
NspI	RCATGY	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	266
PfeI	GAWTC	4 cut(s)	286, 328, 349, 370
PkrI	GCNGC	3 cut(s)	8, 39, 162
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	132, 210, 358
PspPI	GGNCC	3 cut(s)	130, 208, 357
PspPPI	RGGWCCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	3 cut(s)	7, 38, 161
Sau3AI	GATC	2 cut(s)	123, 153
Sau96I	GGNCC	3 cut(s)	130, 208, 357
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	5 cut(s)	74, 111, 192, 280, 315
SinI	GGWCC	2 cut(s)	130, 208
Sse9I	AATT	2 cut(s)	44, 50
SsiI	CCGC	2 cut(s)	137, 161
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	212, 225
TaaI	ACNGT	2 cut(s)	249, 341
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	30, 126, 156
TasI	AATT	2 cut(s)	44, 50
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	4 cut(s)	286, 328, 349, 370
TseFI	GTSAC	3 cut(s)	278, 341, 362
TseI	GCWGC	2 cut(s)	6, 37
Tsp45I	GTSAC	3 cut(s)	278, 341, 362
TspGWI	ACGGA	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	130, 208
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.