AT4G29380

protein kinase family protein WD-40 repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001323
Physical Location & Seq
Forward (+)
14458648 .. 14465684
7037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29380.1

Sequence Viewer

Length: 4485 bp
ATGGGAAACAAAATCGCTCGTACGACACAAGTCTCGGCGACGGAGTACTATCTCCACGACTTGCCGTCTTCATACAATCTGGTCTTAAAAGAGGTTTTAGGTCGAGGAAGATTCCTAAAGTCGATTCAATGTAAGCACGATGAAGGATTGGTTGTTGTTAAGGTTTACTTCAAGCGTGGTGACTCGATCGATCTCAGAGAGTATGAGCGTCGTCTCGTTAAGATCAAAGATGTGTTTTTGTCTCTAGAACATCCTCACGTTTGGCCTTTTCAGTTTTGGCAAGAGACTGATAAAGCAGCGTATCTAGTGAGGCAATACTTTTACAGTAATCTACATGATCGCTTGAGTACGAGGCCTTTCCTCAGTCTTGTAGAGAAGAAGTGGTTGGCGTTTCAGTTGCTTCTTGCTGTGAAGCAATGTCATGAGAAGGATATATGTCATGGTGATATCAAGTGCGAGAACGTATTGTTGACTTCCTGGAACTGGCTTTACCTTGCTGATTTTGCATCCTTCAAACCTACATACATTCCTTATGATGATCCTTCAGACTTCTCGTTCTTCTTTGACACAAGGGGACAAAGACTTTGTTATCTGGCTCCAGAGAGATTCTATGAGCATGGAGGTGAGACACAAGTAGCACAAGATGCTCCATTAAAGCCCTCCATGGATATATTTGCTGTGGGGTGTGTGATAGCCGAACTTTTTCTTGAGGGTCAGCCACTATTTGAACTGGCGCAGCTTCTCGCTTATCGTAGAGGGCAACATGATCCTAGCCAACACCTTGAAAAGATTCCTGATCCGGGAATTCGCAAGATGATTCTTCATATGATTCAGTTAGAACCCGAAGCACGCCTATCTGCTGAAGACTACCTGCAAAATTATGTGGGAGTTGTTTTCCCAAACTACTTCTCACCATTTCTGCACACTTTATATTGTTGTTGGAATCCACTTCCTTCAGACATGAGGGTAGCAACTTGCCAGGGGATATTTCAAGAAATACTTAAAAAGATGATGGAAAATAAGTCAGGTGATGAGATCGGCGTTGATTCTCCTGTAACTTCAAATCCAATGAACGCAAGCACAGTACAGGAAACTTTTGCAAATCACAAATTGAACTCATCTAAGGATTTGATAAGGAATACTGTGAACTCTAAGGATGAGATCTTTTACTCTATTTCTGATGCACTCAAGAAAAATCGCCATCCTTTCTTGAAAAAGATAACAATGGACGATTTGGGTACACTGATGTCTCTCTATGATAGCCGTTCTGACACTTATGGCACGCCTTTTCTACCGGTAGAGGGTAACATGAGATGTGAGGGAATGGTTCTGATTGCATCTATGCTCTGTTCTTGTATCCGCAATATCAAGTTGCCTCATTTGAGGAGGGAAGCTATACTTCTATTGAGATCTTGCTCTTTGTATATTGATGATGATGATCGCTTACAGCGTGTACTTCCATACGTCGTTGCCTTGCTTTCTGATCCAACAGCAATCGTGCGGTGCGCTGCCATGGAAACTTTGTGTGACATTCTGCCGCTTGTCCGAGATTTTCCTCCTAGTGATGCAAAGATTTTCCCAGAGTACATATTTCCGATGCTCTCCATGCTTCCTGAAGATACGGAAGAGAGTGTGAGGATATGCTATGCCAGCAATATTGCAAAACTCGCTCTTACTGCTTATGGATTCTTGATACATTCTTTCCAGTTGAGCGATGTAGGGGTTCTTAATGAATTGAATTCCCAGCAGATCTCCACTACACCTGCTAGTGAGACCCCTAGTCATTTGCAAAAGGCAAATGGCAATGCGCAGCTTCAACAGCTTAGAAAAACTATAGCTGAAGTTGTTCAAGAGCTTGTTATGGGTCCAAAACAAACTCCAAATGTTAGAAGAGCACTCCTTCAGGACATAGGGGAGCTCTGCTTTTTCTTTGGTCAGAGGCAGAGTAATGACTTTCTACTACCGATCCTCCCTGCCTTTCTAAACGACAGAGATGAGCAGCTAAGATCTGTATTCTTTGAGAAGATTGTTTATGTATGCTTTTTTGTTGGCCAGAGAAGTGTGGAGGAGTATCTATTGCCTTATATCGATCAAGCTTTGAGTGATCAGACGGAGGCTGTTATTGTCAATGCATTGGAGTGCTTATCCACATTATGCAAGAGTAGTTTCTTGCGGAAGAGAGCTCTCCTCCAAATGATAGAGTGTGTTTATCCTTTGTTGTGCTATCCATCTCAATGGGTAAGGAGGGCAGTTGTCACTTTCATTGCCGCAAGTAGTGAATGCTTAGGTGCAGTCGACTCTTATGCTTTTATTGCCCCAGTAATACGCTCTTATCTTAGTAGACTGCCTGCGTCAATTGCTTCTGAGGAAGGTCTACTTTCATGTTTGAAGCCCCCTGTCACAAGGGAGGTAGTTTATCGTATCTTTGAAAAAACCAGGAACCCAGAATTCATGGCGAAACAGCGAAAGATGTGGTATAGTTCTTCACCTCAGTCCAAAGATTGGGAATCTGTTGATTTGTTTGACAAAGATGCTGGGGAGTTGAATTCAGTAGAATGCAGGGCCGAACAGAAGCAAAGTGTGGAAGGAAAAAAACAGATTAAGAGTGCATCAAAGCAACCAGAAGTTCAAGGAAAGTATGCAGAAAAGGATGCTAAATTAAGAATCCCGAGAAACCCAAGACCTAATGCTTCTAACACTGTTGAGCTACGTGATCCCGTGTATCCAGAGAAGTTACAGTTCTCTGGGTTTATGGCACCATATGTATCTGGTGCGAATAGCTTTATTGAACCAGAGAACATACCTCTCTATTCGTTTAGCATGGACAAACGAGCAGCTACAAATCCTCCTGTGGCTTCTGAGTCTTCATTGCAGATGAACTCTCTGGGAATGGGTTCATTGTCTGTGCCATGGATGGATTCCATGAGTAAATCATTTAACTTGGCTAGTTCGGTCCCAGTGCCTAAGCTGATTTCTGGGTCATTCCATGTCGGTACCAATCCTAAACAATTTTACAGAGTGGTACATGAGCCAGAAAGCAGAGAAAATGATCAAATCTCCTCAGCCATCAGTAAATTTCAAGACCTCGGAGTATCAAGCTCCTCAAAAAGTGCTTCTGTAACTTCAGAAGATGCTTCTTCTCCAGCGGATCTTGTAGGAGAGCCATCTCTGTCAAGGACATCGGTTCCGGATTCAGGGTGGAAGCCTCGTGGAGTATTAGTTGCTCATCTACAAGAGCATCGCTCTGCGGTCAATGACATTGCCACTTCAAGCGATCATAGCTTTTTTGTTAGTGCATCAGATGATTCCACAGTGAAGGTGTGGGACTCTAGAAAACTGGAAAAGGACATCTCTTTTAGGTCAAGGCTAACATATCATCTCGAGGGAAGCAGAGGGATGTGCACAACAATGCTTCGGAATTCAACGCAAGTTGTAGTTGGAGCCTCTGATGGTGTGATACATATGTTTTCAATTGACCATATCTCCAGAGGCTTGGGGAACGTAGTGGAGAAGTATTCAGGCATTGTTGATATTAAAAAGAAAGATGTTAAAGAAGGCGCTCTAGTTTCTCTCTTGAATTATACTGCTGATAGCCTTTCTGGTCCGATGGTAATGTATAGTACCCAAAACTGCGGAATCCACCTTTGGGATACAAGGTCAGATTTAGATGCATGGACACTGAAAGCAAATCCTGAAGAAGGATATGTGTCTTCATTGGTTACAAGTCCTTGTGGGAATTGGTTTGTCTCTGGGTCTTCAAGGGGAGTGCTTACTCTTTGGGATTTGAGATTTCGTGTTCCTGTAAATTCGTGGCAATACCCCATCATATGTCCCATAGAGAAGATGTGCCTCTGCTTTCTTCCTCCAAGCGTCTCAGTGTCCACCACTATGAAACCTTTAATTTATGTTGCTGCCGGTTGCAACGAAGTTTCACTCTGGAATGCAGAGGGAGGTAGCTGTCACCAGGTATTGAGAGTAGCCAATTATGAAAATGAGACGGATGTTTCCGAGTTTCAATGGAAGTTACCAAGCAATAAGGTAAATCCGAAGCCGAATCATCGTCAGAACATGAGCTCCAAGTACAGAATCGAAGAGTTGAACGAGCCTCCTCCTCGTCTTCCTGGTATCCGCTCTTTGCTCCCTTTACCTGGAGGTGACTTGTTAACAGGTGGTACTGACTTGAAGATTCGGCGTTGGGATTACTCCAGCCCTGAGAGAAGTTATTGTATATGCGGTCCGAGTTTGAAAGGAGTCGGAAATGATGATTTCTATGAACTAAAAACCAACACGGGCGTGCAATTTGTTCAGGAGACAAAGAGACGGCCTCTGGCTACTAAACTGACGGCAAAGGCGGTACTTGCGGCTGCTGCGACAGACACAGCGGGTTGTCATCGTGACTCAGTTCAGTCTCTGGCATCTGTGAAGCTGAACCAGAGACTGTTGATATCAAGCAGCAGAGATGGAGCCATAAAGGTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

1494

Amino Acids

168.12

Weight (kDa)

6.68

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 28 - 287 6.6e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 29 - 293 7.6e-24 Protein kinase domain
VPS15-like_hel PF22956 445 - 806 1.6e-120 VPS15-like, helical domain
Beta-prop_WDR5 PF25175 1071 - 1324 7.8e-12 WDR5 beta-propeller domain
WD40 PF00400 1072 - 1109 1.5e-08 WD domain, G-beta repeat
WD40_Prp19 PF24814 1072 - 1273 8.4e-13 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 1074 - 1158 3.6e-06 WDR3 first beta-propeller domain
WDR55 PF24796 1074 - 1162 1.3e-06 WDR55
Beta-prop_THOC3 PF25174 1075 - 1263 5.4e-11 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 1082 - 1283 1.3e-08 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1771
Acc16I TGCGCA 1 cut(s) 1809
Acc36I ACCTGC 2 cut(s) 879, 1771
Acc65I GGTACC 1 cut(s) 2993
AccB1I GGYRCC 2 cut(s) 2755, 2993
AccB7I CCANNNNNTGG 1 cut(s) 2502
AccBSI CCGCTC 1 cut(s) 4131
AccI GTMKAC 3 cut(s) 2295, 2341, 2374
AccIII TCCGGA 1 cut(s) 3187
AclWI GGATC 7 cut(s) 533, 761, 791, 1478, 1960, 2708, 3156
AcoI YGGCCR 1 cut(s) 2050
AcsI RAATTY 7 cut(s) 804, 1738, 2447, 2545, 3074, 3418, 3805
AcuI CTGAAG 8 cut(s) 528, 882, 939, 1635, 1860, 1886, 3108, 3714
AfiI CCNNNNNNNGG 8 cut(s) 483, 800, 1301, 2502, 3194, 3646, 3698, 4148
AgeI ACCGGT 1 cut(s) 1294
AhdI GACNNNNNGTC 2 cut(s) 64, 1779
AjnI CCWGG 6 cut(s) 476, 978, 2435, 3963, 4120, 4147
AjuI GAANNNNNNNTTGG 4 cut(s) 368, 400, 3628, 3660
AleI CACNNNNGTG 1 cut(s) 4292
AloI GAACNNNNNNTCC 2 cut(s) 4058, 4090
Alw21I GWGCWC 5 cut(s) 1897, 1920, 2185, 3404, 4076
Alw44I GTGCAC 1 cut(s) 3400
AlwI GGATC 7 cut(s) 533, 761, 791, 1478, 1960, 2708, 3156
AlwNI CAGNNNCTG 2 cut(s) 4411, 4438
Ama87I CYCGRG 2 cut(s) 2668, 3380
Aor13HI TCCGGA 1 cut(s) 3187
AoxI GGCC 5 cut(s) 263, 353, 2050, 2562, 4322
ApaLI GTGCAC 1 cut(s) 3400
ApoI RAATTY 7 cut(s) 804, 1738, 2447, 2545, 3074, 3418, 3805
ArsI GACNNNNNNTTYG 2 cut(s) 567, 599
AsiGI ACCGGT 1 cut(s) 1294
Asp700I GAANNNNTTC 4 cut(s) 702, 789, 1845, 2893
Asp718I GGTACC 1 cut(s) 2993
AspLEI GCGC 4 cut(s) 736, 1508, 1810, 3560
AspS9I GGNCC 5 cut(s) 1865, 2562, 2953, 3602, 4235
AsuC2I CCSGG 1 cut(s) 801
AsuHPI GGTGA 8 cut(s) 191, 455, 635, 903, 1040, 2478, 3953, 4166
AvaI CYCGRG 2 cut(s) 2668, 3380
AvaII GGWCC 4 cut(s) 1865, 2953, 3602, 4235
BaeGI GKGCMC 1 cut(s) 3404
BaeI ACNNNNGTAYC 2 cut(s) 3449, 3482
BalI TGGCCA 1 cut(s) 2052
BanI GGYRCC 2 cut(s) 2755, 2993
BanII GRGCYC 3 cut(s) 1920, 2185, 4076
BauI CACGAG 1 cut(s) 3207
BbsI GAAGAC 6 cut(s) 60, 870, 2856, 3702, 3747, 4109
Bbv12I GWGCWC 5 cut(s) 1897, 1920, 2185, 3404, 4076
BbvCI CCTCAGC 1 cut(s) 3061
BceAI ACGGC 4 cut(s) 49, 1248, 4337, 4359
BcgI CGANNNNNNTGC 2 cut(s) 2285, 2319
BciT130I CCWGG 6 cut(s) 478, 980, 2437, 3965, 4122, 4149
BciVI GTATCC 4 cut(s) 1367, 2733, 3643, 4136
BclI TGATCA 2 cut(s) 2104, 3049
BcnI CCSGG 1 cut(s) 801
BfaI CTAG 9 cut(s) 245, 305, 771, 1560, 1767, 1779, 2946, 3330, 3563
BfmI CTRYAG 1 cut(s) 1833
BfoI RGCGCY 1 cut(s) 3561
BfuAI ACCTGC 2 cut(s) 879, 1771
BfuI GTATCC 4 cut(s) 1367, 2733, 3643, 4136
BglII AGATCT 4 cut(s) 1161, 1409, 1749, 2006
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 7 cut(s) 478, 801, 980, 2437, 3965, 4122, 4149
Bme18I GGWCC 4 cut(s) 1865, 2953, 3602, 4235
BmeRI GACNNNNNGTC 2 cut(s) 64, 1779
BmeT110I CYCGRG 2 cut(s) 2668, 3380
BmgT120I GGNCC 5 cut(s) 1865, 2562, 2953, 3602, 4235
BmiI GGNNCC 9 cut(s) 597, 1866, 2441, 2757, 2955, 2995, 3186, 3442, 4465
BmrFI CCNGG 7 cut(s) 478, 801, 980, 2437, 3965, 4122, 4149
BmrI ACTGGG 2 cut(s) 2312, 2951
BmuI ACTGGG 2 cut(s) 2312, 2951
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 6 cut(s) 60, 870, 2856, 3702, 3747, 4109
BplI GAGNNNNNCTC 6 cut(s) 2172, 2204, 3227, 3259, 4309, 4341
BpmI CTGGAG 5 cut(s) 582, 3126, 3469, 4170, 4189
Bpu10I CCTNAGC 3 cut(s) 2284, 2964, 3061
BpuEI CTTGAG 3 cut(s) 364, 728, 1172
BpuMI CCSGG 1 cut(s) 801
Bsa29I ATCGAT 2 cut(s) 189, 2088
BsaAI YACGTR 1 cut(s) 2711
BsaBI GATNNNNATC 1 cut(s) 1437
BsaI GGTCTC 1 cut(s) 1766
BsaJI CCNNGG 5 cut(s) 663, 979, 1512, 2909, 3085
BsaWI WCCGGW 2 cut(s) 1294, 3187
Bsc4I CCNNNNNNNGG 8 cut(s) 483, 800, 1301, 2502, 3194, 3646, 3698, 4148
Bse118I RCCGGY 2 cut(s) 1294, 3914
Bse1I ACTGG 6 cut(s) 488, 735, 1705, 2318, 2957, 3342
Bse3DI GCAATG 5 cut(s) 422, 1810, 2262, 2867, 3258
Bse8I GATNNNNATC 1 cut(s) 1437
BseAI TCCGGA 1 cut(s) 3187
BseBI CCWGG 6 cut(s) 478, 980, 2437, 3965, 4122, 4149
BseCI ATCGAT 2 cut(s) 189, 2088
BseDI CCNNGG 5 cut(s) 663, 979, 1512, 2909, 3085
BseGI GGATG 8 cut(s) 250, 506, 1162, 1201, 2656, 2919, 3402, 4006
BseJI GATNNNNATC 1 cut(s) 1437
BseLI CCNNNNNNNGG 8 cut(s) 483, 800, 1301, 2502, 3194, 3646, 3698, 4148
BseMI GCAATG 5 cut(s) 422, 1810, 2262, 2867, 3258
BseMII CTCAG 9 cut(s) 208, 376, 2355, 2504, 2850, 3075, 3888, 4203, 4413
BseNI ACTGG 6 cut(s) 488, 735, 1705, 2318, 2957, 3342
BseRI GAGGAG 7 cut(s) 1399, 2081, 2177, 3049, 3091, 4098, 4101
BseSI GKGCMC 1 cut(s) 3404
BseYI CCCAGC 2 cut(s) 1743, 2534
BsgI GTGCAG 2 cut(s) 905, 2310
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 5 cut(s) 265, 355, 2052, 2564, 4324
BshNI GGYRCC 2 cut(s) 2755, 2993
BshTI ACCGGT 1 cut(s) 1294
BshVI ATCGAT 2 cut(s) 189, 2088
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 5 cut(s) 1897, 1920, 2185, 3404, 4076
BsiHKCI CYCGRG 2 cut(s) 2668, 3380
BsiSI CCGG 4 cut(s) 800, 1295, 3188, 3915
BsiWI CGTACG 1 cut(s) 20
BslFI GGGAC 4 cut(s) 588, 2939, 3338, 3816
BslI CCNNNNNNNGG 8 cut(s) 483, 800, 1301, 2502, 3194, 3646, 3698, 4148
BsmBI CGTCTC 4 cut(s) 218, 3877, 3989, 4312
BsmFI GGGAC 4 cut(s) 588, 2939, 3338, 3816
BsmI GAATGC 3 cut(s) 2285, 2561, 3946
BsnI GGCC 5 cut(s) 265, 355, 2052, 2564, 4324
Bso31I GGTCTC 1 cut(s) 1766
BsoBI CYCGRG 2 cut(s) 2668, 3380
Bsp1286I GDGCHC 5 cut(s) 1897, 1920, 2185, 3404, 4076
Bsp13I TCCGGA 1 cut(s) 3187
Bsp19I CCATGG 3 cut(s) 663, 1512, 2909
BspANI GGCC 5 cut(s) 265, 355, 2052, 2564, 4324
BspCNI CTCAG 9 cut(s) 207, 375, 2356, 2503, 2851, 3074, 3887, 4204, 4412
BspDI ATCGAT 2 cut(s) 189, 2088
BspEI TCCGGA 1 cut(s) 3187
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 9 cut(s) 597, 1866, 2441, 2757, 2955, 2995, 3186, 3442, 4465
BspMI ACCTGC 2 cut(s) 879, 1771
BspPI GGATC 7 cut(s) 533, 761, 791, 1478, 1960, 2708, 3156
BspQI GCTCTTC 1 cut(s) 1885
BspT107I GGYRCC 2 cut(s) 2755, 2993
BspTNI GGTCTC 1 cut(s) 1766
BsrBI CCGCTC 1 cut(s) 4131
BsrDI GCAATG 5 cut(s) 422, 1810, 2262, 2867, 3258
BsrFI RCCGGY 2 cut(s) 1294, 3914
BsrI ACTGG 6 cut(s) 488, 735, 1705, 2318, 2957, 3342
BssAI RCCGGY 2 cut(s) 1294, 3914
BssECI CCNNGG 5 cut(s) 663, 979, 1512, 2909, 3085
BssSI CACGAG 1 cut(s) 3207
BssT1I CCWWGG 3 cut(s) 663, 1512, 2909
Bst2BI CACGAG 1 cut(s) 3207
Bst2UI CCWGG 6 cut(s) 478, 980, 2437, 3965, 4122, 4149
Bst4CI ACNGT 7 cut(s) 326, 1084, 1144, 2701, 2739, 3313, 4440
Bst6I CTCTTC 4 cut(s) 1620, 1885, 2171, 4086
BstAPI GCANNNNNTGC 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 2711
BstC8I GCNNGC 6 cut(s) 850, 1078, 1283, 1651, 2349, 4295
BstDSI CCRYGG 3 cut(s) 663, 1512, 2909
BstENI CCTNNNNNAGG 1 cut(s) 3696
BstF5I GGATG 8 cut(s) 250, 506, 1162, 1201, 2656, 2919, 3402, 4006
BstH2I RGCGCY 1 cut(s) 3561
BstHHI GCGC 4 cut(s) 736, 1508, 1810, 3560
BstMCI CGRYCG 1 cut(s) 189
BstNI CCWGG 6 cut(s) 478, 980, 2437, 3965, 4122, 4149
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 7 cut(s) 476, 799, 978, 2435, 3963, 4120, 4147
BstSFI CTRYAG 1 cut(s) 1833
BstSLI GKGCMC 1 cut(s) 3404
BstV2I GAAGAC 6 cut(s) 60, 870, 2856, 3702, 3747, 4109
BstX2I RGATCY 5 cut(s) 1161, 1409, 1749, 2006, 3148
BstXI CCANNNNNNTGG 2 cut(s) 2235, 3493
BstYI RGATCY 5 cut(s) 1161, 1409, 1749, 2006, 3148
Bsu15I ATCGAT 2 cut(s) 189, 2088
BsuI GTATCC 4 cut(s) 1367, 2733, 3643, 4136
BsuRI GGCC 5 cut(s) 265, 355, 2052, 2564, 4324
BsuTUI ATCGAT 2 cut(s) 189, 2088
BtgI CCRYGG 3 cut(s) 663, 1512, 2909
BtgZI GCGATG 2 cut(s) 1728, 3224
BtsCI GGATG 8 cut(s) 250, 506, 1162, 1201, 2656, 2919, 3402, 4006
BtsIMutI CAGTG 6 cut(s) 1241, 2697, 2964, 3318, 3677, 3882
BveI ACCTGC 2 cut(s) 879, 1771
Cac8I GCNNGC 6 cut(s) 850, 1078, 1283, 1651, 2349, 4295
CaiI CAGNNNCTG 2 cut(s) 4411, 4438
CciI TCATGA 1 cut(s) 421
CfoI GCGC 4 cut(s) 736, 1508, 1810, 3560
Cfr10I RCCGGY 2 cut(s) 1294, 3914
Cfr13I GGNCC 5 cut(s) 1865, 2562, 2953, 3602, 4235
ClaI ATCGAT 2 cut(s) 189, 2088
CpoI CGGWCCG 1 cut(s) 4235
CseI GACGC 3 cut(s) 197, 2340, 3859
CsiI ACCWGGT 1 cut(s) 3963
CspAI ACCGGT 1 cut(s) 1294
CspI CGGWCCG 1 cut(s) 4235
DriI GACNNNNNGTC 2 cut(s) 64, 1779
EaeI YGGCCR 1 cut(s) 2050
Eam1104I CTCTTC 4 cut(s) 1620, 1885, 2171, 4086
Eam1105I GACNNNNNGTC 2 cut(s) 64, 1779
EarI CTCTTC 4 cut(s) 1620, 1885, 2171, 4086
Ecl136II GAGCTC 3 cut(s) 1918, 2183, 4074
Eco130I CCWWGG 3 cut(s) 663, 1512, 2909
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 3 cut(s) 1920, 2185, 4076
Eco31I GGTCTC 1 cut(s) 1766
Eco32I GATATC 2 cut(s) 448, 4446
Eco47I GGWCC 4 cut(s) 1865, 2953, 3602, 4235
Eco53kI GAGCTC 3 cut(s) 1918, 2183, 4074
Eco57I CTGAAG 8 cut(s) 528, 882, 939, 1635, 1860, 1886, 3108, 3714
Eco88I CYCGRG 2 cut(s) 2668, 3380
EcoICRI GAGCTC 3 cut(s) 1918, 2183, 4074
EcoNI CCTNNNNNAGG 1 cut(s) 3696
EcoRI GAATTC 5 cut(s) 804, 1738, 2447, 2545, 3418
EcoRII CCWGG 6 cut(s) 476, 978, 2435, 3963, 4120, 4147
EcoRV GATATC 2 cut(s) 448, 4446
EcoT14I CCWWGG 3 cut(s) 663, 1512, 2909
EcoT22I ATGCAT 2 cut(s) 2134, 3673
EcoT38I GRGCYC 3 cut(s) 1920, 2185, 4076
ErhI CCWWGG 3 cut(s) 663, 1512, 2909
Esp3I CGTCTC 4 cut(s) 218, 3877, 3989, 4312
FalI AAGNNNNNCTT 8 cut(s) 152, 184, 984, 1016, 1383, 1415, 2361, 2393
FaqI GGGAC 4 cut(s) 588, 2939, 3338, 3816
FauI CCCGC 1 cut(s) 4375
FauNDI CATATG 4 cut(s) 825, 2761, 3462, 3827
FbaI TGATCA 2 cut(s) 2104, 3049
FblI GTMKAC 3 cut(s) 2295, 2341, 2374
FokI GGATG 8 cut(s) 237, 493, 1169, 1188, 2663, 2926, 3409, 4013
FriOI GRGCYC 3 cut(s) 1920, 2185, 4076
FspBI CTAG 9 cut(s) 245, 305, 771, 1560, 1767, 1779, 2946, 3330, 3563
FspI TGCGCA 1 cut(s) 1809
GlaI GCGC 4 cut(s) 735, 1507, 1809, 3559
GsaI CCCAGC 2 cut(s) 1747, 2538
GsuI CTGGAG 5 cut(s) 582, 3126, 3469, 4170, 4189
HaeII RGCGCY 1 cut(s) 3561
HaeIII GGCC 5 cut(s) 265, 355, 2052, 2564, 4324
HapII CCGG 4 cut(s) 800, 1295, 3188, 3915
HgaI GACGC 3 cut(s) 197, 2340, 3859
HhaI GCGC 4 cut(s) 736, 1508, 1810, 3560
Hin6I GCGC 4 cut(s) 734, 1506, 1808, 3558
HinP1I GCGC 4 cut(s) 734, 1506, 1808, 3558
HincII GTYRAC 3 cut(s) 471, 2296, 4164
HindII GTYRAC 3 cut(s) 471, 2296, 4164
HindIII AAGCTT 1 cut(s) 2094
HpaI GTTAAC 1 cut(s) 4164
HpaII CCGG 4 cut(s) 800, 1295, 3188, 3915
HphI GGTGA 8 cut(s) 191, 455, 635, 903, 1040, 2478, 3953, 4166
Hpy99I CGWCG 3 cut(s) 43, 213, 1469
HpyCH4III ACNGT 7 cut(s) 326, 1084, 1144, 2701, 2739, 3313, 4440
HpyCH4IV ACGT 5 cut(s) 258, 462, 1464, 2710, 3501
HpySE526I ACGT 5 cut(s) 258, 462, 1464, 2710, 3501
HspAI GCGC 4 cut(s) 734, 1506, 1808, 3558
Kpn2I TCCGGA 1 cut(s) 3187
KpnI GGTACC 1 cut(s) 2997
Ksp22I TGATCA 2 cut(s) 2104, 3049
KspAI GTTAAC 1 cut(s) 4164
LguI GCTCTTC 1 cut(s) 1885
LmnI GCTCC 8 cut(s) 601, 652, 1915, 3104, 3440, 4079, 4143, 4463
MabI ACCWGGT 1 cut(s) 3963
MaeI CTAG 9 cut(s) 245, 305, 771, 1560, 1767, 1779, 2946, 3330, 3563
MaeII ACGT 5 cut(s) 258, 462, 1464, 2710, 3501
MbiI CCGCTC 1 cut(s) 4131
MfeI CAATTG 2 cut(s) 2355, 3471
MflI RGATCY 5 cut(s) 1161, 1409, 1749, 2006, 3148
MhlI GDGCHC 5 cut(s) 1897, 1920, 2185, 3404, 4076
MlsI TGGCCA 1 cut(s) 2052
MluNI TGGCCA 1 cut(s) 2052
MlyI GAGTC 6 cut(s) 176, 2291, 2870, 3320, 4260, 4391
MmeI TCCRAC 4 cut(s) 920, 1511, 3418, 4234
Mox20I TGGCCA 1 cut(s) 2052
Mph1103I ATGCAT 2 cut(s) 2134, 3673
MroI TCCGGA 1 cut(s) 3187
MroXI GAANNNNTTC 4 cut(s) 702, 789, 1845, 2893
MscI TGGCCA 1 cut(s) 2052
MslI CAYNNNNRTG 6 cut(s) 621, 2137, 2233, 3407, 3887, 4292
Msp20I TGGCCA 1 cut(s) 2052
MspA1I CMGCKG 2 cut(s) 3146, 4382
MspI CCGG 4 cut(s) 800, 1295, 3188, 3915
MspR9I CCNGG 7 cut(s) 478, 801, 980, 2437, 3965, 4122, 4149
MunI CAATTG 2 cut(s) 2355, 3471
Mva1269I GAATGC 3 cut(s) 2285, 2561, 3946
MvaI CCWGG 6 cut(s) 478, 980, 2437, 3965, 4122, 4149
NciI CCSGG 1 cut(s) 801
NcoI CCATGG 3 cut(s) 663, 1512, 2909
NdeI CATATG 4 cut(s) 825, 2761, 3462, 3827
NlaIV GGNNCC 9 cut(s) 597, 1866, 2441, 2757, 2955, 2995, 3186, 3442, 4465
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 7 cut(s) 179, 1526, 2254, 2398, 3959, 4154, 4394
NsbI TGCGCA 1 cut(s) 1809
NsiI ATGCAT 2 cut(s) 2134, 3673
OliI CACNNNNGTG 1 cut(s) 4292
PaeR7I CTCGAG 1 cut(s) 3380
PagI TCATGA 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 1771
PceI AGGCCT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 1885
PcsI WCGNNNNNNNCGW 1 cut(s) 1447
PctI GAATGC 3 cut(s) 2285, 2561, 3946
PdmI GAANNNNTTC 4 cut(s) 702, 789, 1845, 2893
Pfl23II CGTACG 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 2502
PfoI TCCNGGA 2 cut(s) 476, 799
PinAI ACCGGT 1 cut(s) 1294
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 6 cut(s) 176, 2291, 2869, 3320, 4259, 4391
PpsI GAGTC 6 cut(s) 176, 2291, 2869, 3320, 4259, 4391
Ppu21I YACGTR 1 cut(s) 2711
PshAI GACNNNNGTC 1 cut(s) 29
Psp124BI GAGCTC 3 cut(s) 1920, 2185, 4076
Psp6I CCWGG 6 cut(s) 476, 978, 2435, 3963, 4120, 4147
PspFI CCCAGC 2 cut(s) 1743, 2534
PspGI CCWGG 6 cut(s) 476, 978, 2435, 3963, 4120, 4147
PspLI CGTACG 1 cut(s) 20
PspN4I GGNNCC 9 cut(s) 597, 1866, 2441, 2757, 2955, 2995, 3186, 3442, 4465
PspPI GGNCC 5 cut(s) 1865, 2562, 2953, 3602, 4235
PsrI GAACNNNNNNTAC 2 cut(s) 473, 505
PstNI CAGNNNCTG 2 cut(s) 4411, 4438
PsuI RGATCY 5 cut(s) 1161, 1409, 1749, 2006, 3148
PvuI CGATCG 1 cut(s) 189
RseI CAYNNNNRTG 6 cut(s) 621, 2137, 2233, 3407, 3887, 4292
Rsr2I CGGWCCG 1 cut(s) 4235
RsrII CGGWCCG 1 cut(s) 4235
SacI GAGCTC 3 cut(s) 1920, 2185, 4076
SalI GTCGAC 1 cut(s) 2294
SapI GCTCTTC 1 cut(s) 1885
Sau96I GGNCC 5 cut(s) 1865, 2562, 2953, 3602, 4235
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 6 cut(s) 176, 2291, 2870, 3320, 4260, 4391
ScrFI CCNGG 7 cut(s) 478, 801, 980, 2437, 3965, 4122, 4149
SduI GDGCHC 5 cut(s) 1897, 1920, 2185, 3404, 4076
SexAI ACCWGGT 1 cut(s) 3963
SfcI CTRYAG 1 cut(s) 1833
Sfr274I CTCGAG 1 cut(s) 3380
SinI GGWCC 4 cut(s) 1865, 2953, 3602, 4235
SlaI CTCGAG 1 cut(s) 3380
SmiMI CAYNNNNRTG 6 cut(s) 621, 2137, 2233, 3407, 3887, 4292
SmlI CTYRAG 4 cut(s) 343, 707, 1187, 3380
SmoI CTYRAG 4 cut(s) 343, 707, 1187, 3380
SseBI AGGCCT 1 cut(s) 355
SspI AATATT 1 cut(s) 1657
SspMI CTAG 9 cut(s) 245, 305, 771, 1560, 1767, 1779, 2946, 3330, 3563
SstI GAGCTC 3 cut(s) 1920, 2185, 4076
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 7 cut(s) 476, 799, 978, 2435, 3963, 4120, 4147
StyI CCWWGG 3 cut(s) 663, 1512, 2909
TaaI ACNGT 7 cut(s) 326, 1084, 1144, 2701, 2739, 3313, 4440
TaiI ACGT 5 cut(s) 261, 465, 1467, 2713, 3504
TaqI TCGA 8 cut(s) 103, 122, 185, 189, 2088, 2295, 3381, 4089
TaqII GACCGA 1 cut(s) 2941
TatI WGTACW 5 cut(s) 45, 1084, 1453, 1584, 4080
TauI GCSGC 3 cut(s) 1540, 2270, 4364
TscAI CASTG 6 cut(s) 1248, 2704, 2964, 3318, 3684, 3882
TseFI GTSAC 7 cut(s) 179, 1526, 2254, 2398, 3959, 4154, 4394
Tsp45I GTSAC 7 cut(s) 179, 1526, 2254, 2398, 3959, 4154, 4394
TspGWI ACGGA 4 cut(s) 56, 1637, 2126, 4013
TspRI CASTG 6 cut(s) 1248, 2704, 2964, 3318, 3684, 3882
Van91I CCANNNNNTGG 1 cut(s) 2502
VneI GTGCAC 1 cut(s) 3400
VpaK11BI GGWCC 4 cut(s) 1865, 2953, 3602, 4235
XagI CCTNNNNNAGG 1 cut(s) 3696
XapI RAATTY 7 cut(s) 804, 1738, 2447, 2545, 3074, 3418, 3805
XbaI TCTAGA 2 cut(s) 244, 3329
XhoI CTCGAG 1 cut(s) 3380
XmiI GTMKAC 3 cut(s) 2295, 2341, 2374
XmnI GAANNNNTTC 4 cut(s) 702, 789, 1845, 2893
XspI CTAG 9 cut(s) 245, 305, 771, 1560, 1767, 1779, 2946, 3330, 3563
ZrmI AGTACT 1 cut(s) 47
Zsp2I ATGCAT 2 cut(s) 2134, 3673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.