Rmu_sc0005920.1_g000001

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005920.1
OG0001323
Physical Location & Seq
Reverse (-)
138 .. 1075
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005920.1_g000001.1.cds

Sequence Viewer

Length: 660 bp
atgcttcctgatgatacagaggaaagtgtgaggatatgttatgccagtactatagctaagctggcactaactgcttatggtttcttagttcactcaataaccttgagtgaggctggtgtgcttgatgaattaagttctccaaagaagctactatcatcatctagtgaaacatctggtcagctccacaaggagagcactccttcaatatcagcaatctatgctgcttctttggccagaggcagagtaattttgttacccattctccctgcttttctgaatgatcgagatgagaagctaagagcagctgtaagtgatgctacagaggctactattgtcaatgcattggactgtttggccattttgtgcaaaagtagttacttgcgcaagaggatactcatggaaatgattgagcgtgcatttccattgttatgcagttatgctatcctagtcaatggacagccagcatctctagcttctgagaaggctctcctttcatgtttgaagcctcctgtctcaagacaagtattttaccaagttctagaaaatgcaaggagtacagacatgttggaaagacagagaaagatatggtacaattcttggcctcaatctaaacaatgggaaagcactcgagctttatgtggccacagggacgtactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

219

Amino Acids

24.26

Weight (kDa)

8.19

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 383
AcoI YGGCCR 3 cut(s) 231, 354, 640
AfaI GTAC 4 cut(s) 49, 556, 590, 654
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 2 cut(s) 204, 502
AluBI AGCT 8 cut(s) 56, 61, 148, 181, 295, 305, 473, 632
AluI AGCT 8 cut(s) 56, 61, 148, 181, 295, 305, 473, 632
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 4 cut(s) 231, 354, 599, 640
ApeKI GCWGC 2 cut(s) 221, 302
AspLEI GCGC 1 cut(s) 384
AvaI CYCGRG 1 cut(s) 627
BalI TGGCCA 3 cut(s) 233, 356, 642
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 208, 314
BciVI GTATCC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 4 cut(s) 162, 446, 470, 539
BfmI CTRYAG 2 cut(s) 51, 318
BfuI GTATCC 1 cut(s) 384
BisI GCNGC 2 cut(s) 222, 303
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 2 cut(s) 223, 304
BmcAI AGTACT 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 627
BmsI GCATC 2 cut(s) 304, 473
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 124, 499
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 208, 314
BshFI GGCC 4 cut(s) 233, 356, 601, 642
BsiHKAI GWGCWC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 627
BsmAI GTCTC 1 cut(s) 517
BsnI GGCC 4 cut(s) 233, 356, 601, 642
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 280
Bsp1720I GCTNAGC 1 cut(s) 57
BspANI GGCC 4 cut(s) 233, 356, 601, 642
BspCNI CTCAG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 350, 657
BstAPI GCANNNNNTGC 2 cut(s) 71, 218
BstC8I GCNNGC 3 cut(s) 63, 414, 462
BstDEI CTNAG 4 cut(s) 57, 85, 296, 477
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 6 cut(s) 62, 71, 218, 230, 323, 470
BstNSI RCATGY 1 cut(s) 565
BstSFI CTRYAG 2 cut(s) 51, 318
BstV1I GCAGC 2 cut(s) 208, 314
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 4 cut(s) 233, 356, 601, 642
Cac8I GCNNGC 3 cut(s) 63, 414, 462
CfoI GCGC 1 cut(s) 384
Csp6I GTAC 4 cut(s) 48, 555, 589, 653
CviAII CATG 3 cut(s) 397, 495, 562
CviQI GTAC 4 cut(s) 48, 555, 589, 653
DdeI CTNAG 4 cut(s) 57, 85, 296, 477
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EaeI YGGCCR 3 cut(s) 231, 354, 640
Eco88I CYCGRG 1 cut(s) 627
EcoT22I ATGCAT 1 cut(s) 343
FaeI CATG 3 cut(s) 400, 498, 565
FatI CATG 3 cut(s) 396, 494, 561
Fnu4HI GCNGC 2 cut(s) 222, 303
Fsp4HI GCNGC 2 cut(s) 222, 303
FspBI CTAG 4 cut(s) 162, 446, 470, 539
FspI TGCGCA 1 cut(s) 383
GlaI GCGC 1 cut(s) 383
GluI GCNGC 2 cut(s) 222, 303
HaeIII GGCC 4 cut(s) 233, 356, 601, 642
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 400, 498, 565
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 276, 478
Hpy188III TCNNGA 4 cut(s) 8, 284, 516, 539
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 210, 475
HpyCH4III ACNGT 2 cut(s) 350, 657
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 5 cut(s) 341, 366, 416, 432, 548
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 71, 218, 230, 323, 470
HpyF3I CTNAG 4 cut(s) 57, 85, 296, 477
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 3 cut(s) 400, 498, 565
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 2 cut(s) 208, 314
LweI GCATC 2 cut(s) 304, 473
MaeI CTAG 4 cut(s) 162, 446, 470, 539
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 2 cut(s) 252, 374
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 197
MlsI TGGCCA 3 cut(s) 233, 356, 642
MluCI AATT 3 cut(s) 128, 246, 592
MluNI TGGCCA 3 cut(s) 233, 356, 642
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 8 cut(s) 13, 24, 103, 230, 316, 381, 516, 612
Mox20I TGGCCA 3 cut(s) 233, 356, 642
Mph1103I ATGCAT 1 cut(s) 343
MscI TGGCCA 3 cut(s) 233, 356, 642
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 401, 427
Msp20I TGGCCA 3 cut(s) 233, 356, 642
MspA1I CMGCKG 1 cut(s) 305
MwoI GCNNNNNNNGC 6 cut(s) 62, 71, 218, 230, 323, 470
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 400, 498, 565
NsbI TGCGCA 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 565
PaeR7I CTCGAG 1 cut(s) 627
PciI ACATGT 1 cut(s) 561
PkrI GCNGC 2 cut(s) 223, 304
PscI ACATGT 1 cut(s) 561
PspXI VCTCGAGB 1 cut(s) 627
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 4 cut(s) 49, 556, 590, 654
RsaNI GTAC 4 cut(s) 48, 555, 589, 653
RseI CAYNNNNRTG 2 cut(s) 401, 427
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 222, 303
Sau3AI GATC 1 cut(s) 280
ScaI AGTACT 1 cut(s) 49
SduI GDGCHC 1 cut(s) 197
SfaNI GCATC 2 cut(s) 304, 473
SfcI CTRYAG 2 cut(s) 51, 318
Sfr274I CTCGAG 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 401, 427
SmlI CTYRAG 3 cut(s) 103, 514, 627
SmoI CTYRAG 3 cut(s) 103, 514, 627
Sse9I AATT 3 cut(s) 128, 246, 592
SspMI CTAG 4 cut(s) 162, 446, 470, 539
TaaI ACNGT 2 cut(s) 350, 657
TaiI ACGT 1 cut(s) 654
TaqI TCGA 2 cut(s) 283, 628
TasI AATT 3 cut(s) 128, 246, 592
TatI WGTACW 2 cut(s) 47, 554
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseI GCWGC 2 cut(s) 221, 302
TspDTI ATGAA 2 cut(s) 141, 483
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 565
XhoI CTCGAG 1 cut(s) 627
XspI CTAG 4 cut(s) 162, 446, 470, 539
ZrmI AGTACT 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.