RLG00000029595

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001323
Physical Location & Seq
Reverse (-)
40876294 .. 40878741
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029595

Sequence Viewer

Length: 1242 bp
ATGAGCATGGAGGTTGCACTTTGCCAGAGTGTTTTTCCTGAGATACTGAAACAAATGATGAGCAATAGGTCAACTCAGGACACTGGTACTGGACATGGAACTCCTTCAAACATCCATACTGTTAGCGGTAAATCTTCTCAGGACATGATTAAAGTAGAGATGGATAAAGGTTTCAAACACCATCAATTTGAACTTCTCGGTGATATCAATACCCTTCTTAGGGATGTTAAACAAAGTAATCATTATTCTAATACGAAGCCAATGGTGGAGGACAACACTAATCCTGCATTTTCCCAAAATCTTGGAAACTATGGCATGAGAAATGATTATCCTTTTCCAAAAAAGATTACAATGAATGATTTGAATTCATCGATATCCAAGTATGACAGCCAATCAGATACCTCTGGTATGCCTTTTTTACCATTACCTGAAGACAGTTTGACGAGGAGGGCGATACTTTTGCTGGAGTCATATGCATTGTATATTTATGATGAAAACTGGTTGCGGCATGTAATTCCATATGTTACATTATGTGACATTCTCCCTTTAGTTCAAGATTTTCCTCCTAGTGCTGCAAAAAAATTTCCGGAGTATATTCTGCCAATGCTTTCCATGCTTCCTGATGATACAGAGGAAAGTCTGGCACTAACTGCTTATGGTTTCTTGGTTCACTCAATAACCTTGAGTGAGGCTGGTGTGCTTGATGATTTAAGTTCTCCAAAGAAGCTACTGTCATCATCTAGTGAGACATCTGGTCAGCTCCACAAGTTAAATAATGATGCACAGCTTGCCCAGTTGAGGAAGTCCATAGCTGAAGTCATTCAAGAGCTTGTTATGGGTCCCAAGCAAACTCCCAATATCAGGAGAGCACTCCTTCAGGATATCAGCAATCTATGCTGCTTCTTTGGCCAGAGGCAGAGTAATTTTGCTGTAAGTGATGCTACAGAGGCTGTTATTGTCAATGCATTGGACTGTTTGGCCATTTTGTGCAAAAGTGGTTACTTGCGCAAGAGGATACTCCTGGAAATGATTGAGCGTGCATTTCCATTGTTATGCGATCTTAGTCAATGGGTAAGAAGGTCGACTGTCAGTTTTATTGCAGCCAGCAGTGATTGCTTAGGTGCAGTAGATTCCTATGTATTCATTGCTCCTGTTATTCGTCCCCTTCTTTGTAGACAGCCAGCATCTCTAGCTTCTGAGAAGGCTCTCCCTTCATGTTTGAAGCCTCCTGTCTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

414

Amino Acids

45.95

Weight (kDa)

5.94

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS15-like_hel PF22956 176 - 308 4.7e-20 VPS15-like, helical domain
VPS15-like_hel PF22956 310 - 413 1.4e-25 VPS15-like, helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1007
AccI GTMKAC 2 cut(s) 1082, 1174
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 2 cut(s) 126, 505
AcoI YGGCCR 2 cut(s) 907, 978
AcsI RAATTY 2 cut(s) 364, 581
AcuI CTGAAG 3 cut(s) 450, 834, 860
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 4 cut(s) 219, 220, 798, 861
AgsI TTSAA 7 cut(s) 108, 175, 191, 364, 554, 824, 1222
AhdI GACNNNNNGTC 1 cut(s) 753
AjnI CCWGG 1 cut(s) 1020
AluBI AGCT 6 cut(s) 727, 760, 787, 812, 829, 1193
AluI AGCT 6 cut(s) 727, 760, 787, 812, 829, 1193
Alw21I GWGCWC 1 cut(s) 871
Alw26I GTCTC 2 cut(s) 740, 1237
AlwNI CAGNNNCTG 1 cut(s) 950
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 2 cut(s) 907, 978
ApeKI GCWGC 3 cut(s) 572, 897, 1100
ApoI RAATTY 2 cut(s) 364, 581
Asp700I GAANNNNTTC 2 cut(s) 103, 819
AspLEI GCGC 1 cut(s) 1008
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 839
BalI TGGCCA 2 cut(s) 909, 980
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 871
BbvI GCAGC 3 cut(s) 559, 884, 1112
BccI CCATC 2 cut(s) 154, 189
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 1 cut(s) 1022
BciVI GTATCC 1 cut(s) 1008
BcoDI GTCTC 2 cut(s) 740, 1237
BfaI CTAG 3 cut(s) 567, 741, 1190
BfmI CTRYAG 1 cut(s) 942
BfuI GTATCC 1 cut(s) 1008
BisI GCNGC 4 cut(s) 506, 573, 898, 1101
BlsI GCNGC 4 cut(s) 507, 574, 899, 1102
Bme1390I CCNGG 1 cut(s) 1022
Bme18I GGWCC 1 cut(s) 839
BmeRI GACNNNNNGTC 1 cut(s) 753
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 2 cut(s) 840, 841
BmrFI CCNGG 1 cut(s) 1022
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 769, 928, 1193
BmuI ACTGGG 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 1117
BpuEI CTTGAG 2 cut(s) 703, 1219
Bsa29I ATCGAT 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 220, 798, 861
Bse1I ACTGG 4 cut(s) 88, 94, 503, 793
Bse3DI GCAATG 1 cut(s) 1143
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 1 cut(s) 1022
BseCI ATCGAT 1 cut(s) 371
BseGI GGATG 2 cut(s) 111, 229
BseLI CCNNNNNNNGG 4 cut(s) 219, 220, 798, 861
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 4 cut(s) 30, 89, 152, 1188
BseNI ACTGG 4 cut(s) 88, 94, 503, 793
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 559, 884, 1112
BsgI GTGCAG 1 cut(s) 1143
BshFI GGCC 2 cut(s) 909, 980
BshVI ATCGAT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 871
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 2 cut(s) 825, 1146
BslI CCNNNNNNNGG 4 cut(s) 219, 220, 798, 861
BsmAI GTCTC 2 cut(s) 740, 1237
BsmFI GGGAC 2 cut(s) 825, 1146
BsnI GGCC 2 cut(s) 909, 980
Bsp1286I GDGCHC 1 cut(s) 871
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 1 cut(s) 1057
BspACI CCGC 2 cut(s) 126, 505
BspANI GGCC 2 cut(s) 909, 980
BspCNI CTCAG 4 cut(s) 31, 88, 151, 1189
BspDI ATCGAT 1 cut(s) 371
BspEI TCCGGA 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 840, 841
BsrDI GCAATG 1 cut(s) 1143
BsrI ACTGG 4 cut(s) 88, 94, 503, 793
BssMI GATC 1 cut(s) 1057
Bst2UI CCWGG 1 cut(s) 1022
Bst4CI ACNGT 5 cut(s) 121, 437, 732, 974, 1087
BstAPI GCANNNNNTGC 4 cut(s) 650, 788, 894, 1113
BstC8I GCNNGC 4 cut(s) 789, 1038, 1105, 1182
BstDEI CTNAG 7 cut(s) 39, 75, 138, 218, 1061, 1117, 1197
BstF5I GGATG 2 cut(s) 111, 229
BstHHI GCGC 1 cut(s) 1008
BstKTI GATC 1 cut(s) 1060
BstMAI GTCTC 2 cut(s) 740, 1237
BstMBI GATC 1 cut(s) 1057
BstMWI GCNNNNNNNGC 8 cut(s) 613, 650, 788, 894, 906, 947, 1113, 1190
BstNI CCWGG 1 cut(s) 1022
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 1020
BstSFI CTRYAG 1 cut(s) 942
BstV1I GCAGC 3 cut(s) 559, 884, 1112
BstV2I GAAGAC 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 302
Bsu15I ATCGAT 1 cut(s) 371
BsuI GTATCC 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 909, 980
BsuTUI ATCGAT 1 cut(s) 371
BtsCI GGATG 2 cut(s) 111, 229
BtsI GCAGTG 1 cut(s) 1114
BtsIMutI CAGTG 2 cut(s) 81, 1114
Cac8I GCNNGC 4 cut(s) 789, 1038, 1105, 1182
CaiI CAGNNNCTG 1 cut(s) 950
CfoI GCGC 1 cut(s) 1008
Cfr13I GGNCC 1 cut(s) 839
ClaI ATCGAT 1 cut(s) 371
Csp6I GTAC 1 cut(s) 87
CviAII CATG 7 cut(s) 7, 95, 145, 316, 509, 613, 1215
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 7 cut(s) 39, 75, 138, 218, 1061, 1117, 1197
DpnI GATC 1 cut(s) 1059
DpnII GATC 1 cut(s) 1057
DriI GACNNNNNGTC 1 cut(s) 753
EaeI YGGCCR 2 cut(s) 907, 978
Eam1105I GACNNNNNGTC 1 cut(s) 753
Eco32I GATATC 3 cut(s) 205, 375, 883
Eco47I GGWCC 1 cut(s) 839
Eco57I CTGAAG 3 cut(s) 450, 834, 860
EcoO109I RGGNCCY 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 1020
EcoRV GATATC 3 cut(s) 205, 375, 883
EcoT22I ATGCAT 2 cut(s) 478, 967
FaeI CATG 7 cut(s) 10, 98, 148, 319, 512, 616, 1218
FaqI GGGAC 2 cut(s) 825, 1146
FatI CATG 7 cut(s) 6, 94, 144, 315, 508, 612, 1214
FauNDI CATATG 2 cut(s) 472, 520
FblI GTMKAC 2 cut(s) 1082, 1174
Fnu4HI GCNGC 4 cut(s) 506, 573, 898, 1101
FokI GGATG 2 cut(s) 98, 236
Fsp4HI GCNGC 4 cut(s) 506, 573, 898, 1101
FspBI CTAG 3 cut(s) 567, 741, 1190
FspI TGCGCA 1 cut(s) 1007
GlaI GCGC 1 cut(s) 1007
GluI GCNGC 4 cut(s) 506, 573, 898, 1101
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 909, 980
HapII CCGG 1 cut(s) 587
HhaI GCGC 1 cut(s) 1008
Hin1II CATG 7 cut(s) 10, 98, 148, 319, 512, 616, 1218
Hin6I GCGC 1 cut(s) 1006
HinP1I GCGC 1 cut(s) 1006
HincII GTYRAC 2 cut(s) 72, 1083
HindII GTYRAC 2 cut(s) 72, 1083
HinfI GANTC 2 cut(s) 467, 1130
HpaII CCGG 1 cut(s) 587
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 4 cut(s) 72, 670, 1083, 1175
Hpy188I TCNGA 2 cut(s) 397, 1198
Hpy8I GTNNAC 4 cut(s) 72, 670, 1083, 1175
HpyAV CCTTC 7 cut(s) 114, 224, 884, 1071, 1175, 1195, 1221
HpyCH4III ACNGT 5 cut(s) 121, 437, 732, 974, 1087
HpyF10VI GCNNNNNNNGC 8 cut(s) 613, 650, 788, 894, 906, 947, 1113, 1190
HpyF3I CTNAG 7 cut(s) 39, 75, 138, 218, 1061, 1117, 1197
Hsp92II CATG 7 cut(s) 10, 98, 148, 319, 512, 616, 1218
HspAI GCGC 1 cut(s) 1006
KflI GGGWCCC 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 586
Kzo9I GATC 1 cut(s) 1057
LmnI GCTCC 2 cut(s) 765, 1153
Lsp1109I GCAGC 3 cut(s) 559, 884, 1112
LweI GCATC 3 cut(s) 769, 928, 1193
MaeI CTAG 3 cut(s) 567, 741, 1190
MaeIII GTNAC 3 cut(s) 523, 533, 998
MalI GATC 1 cut(s) 1059
MboI GATC 1 cut(s) 1057
MboII GAAGA 2 cut(s) 126, 443
MhlI GDGCHC 1 cut(s) 871
MlsI TGGCCA 2 cut(s) 909, 980
MluCI AATT 5 cut(s) 185, 364, 513, 581, 922
MluNI TGGCCA 2 cut(s) 909, 980
MlyI GAGTC 1 cut(s) 476
Mox20I TGGCCA 2 cut(s) 909, 980
Mph1103I ATGCAT 2 cut(s) 478, 967
MroI TCCGGA 1 cut(s) 586
MroXI GAANNNNTTC 2 cut(s) 103, 819
MscI TGGCCA 2 cut(s) 909, 980
MseI TTAA 4 cut(s) 150, 228, 710, 770
MslI CAYNNNNRTG 1 cut(s) 1051
Msp20I TGGCCA 2 cut(s) 909, 980
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 1022
MwoI GCNNNNNNNGC 8 cut(s) 613, 650, 788, 894, 906, 947, 1113, 1190
NdeI CATATG 2 cut(s) 472, 520
NdeII GATC 1 cut(s) 1057
NlaIII CATG 7 cut(s) 10, 98, 148, 319, 512, 616, 1218
NlaIV GGNNCC 2 cut(s) 840, 841
NmuCI GTSAC 1 cut(s) 533
NsbI TGCGCA 1 cut(s) 1007
NsiI ATGCAT 2 cut(s) 478, 967
NspI RCATGY 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 449
PdmI GAANNNNTTC 2 cut(s) 103, 819
PfeI GAWTC 1 cut(s) 1130
PfoI TCCNGGA 1 cut(s) 1020
PkrI GCNGC 4 cut(s) 507, 574, 899, 1102
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 839
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 1020
PspGI CCWGG 1 cut(s) 1020
PspN4I GGNNCC 2 cut(s) 840, 841
PspPI GGNCC 1 cut(s) 839
PspPPI RGGWCCY 1 cut(s) 839
PstNI CAGNNNCTG 1 cut(s) 950
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 1051
SalI GTCGAC 1 cut(s) 1081
SaqAI TTAA 4 cut(s) 150, 228, 710, 770
SatI GCNGC 4 cut(s) 506, 573, 898, 1101
Sau3AI GATC 1 cut(s) 1057
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 1022
SduI GDGCHC 1 cut(s) 871
SfaNI GCATC 3 cut(s) 769, 928, 1193
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 1 cut(s) 1051
SmlI CTYRAG 2 cut(s) 682, 1234
SmoI CTYRAG 2 cut(s) 682, 1234
Sse9I AATT 5 cut(s) 185, 364, 513, 581, 922
SsiI CCGC 2 cut(s) 126, 505
SspMI CTAG 3 cut(s) 567, 741, 1190
StyD4I CCNGG 1 cut(s) 1020
TaaI ACNGT 5 cut(s) 121, 437, 732, 974, 1087
TaqI TCGA 2 cut(s) 371, 1082
TasI AATT 5 cut(s) 185, 364, 513, 581, 922
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 1 cut(s) 1130
Tru1I TTAA 4 cut(s) 150, 228, 710, 770
Tru9I TTAA 4 cut(s) 150, 228, 710, 770
TscAI CASTG 2 cut(s) 88, 1114
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 572, 897, 1100
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 5 cut(s) 357, 368, 507, 1132, 1203
TspRI CASTG 2 cut(s) 88, 1114
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 2 cut(s) 364, 581
XceI RCATGY 1 cut(s) 512
XmiI GTMKAC 2 cut(s) 1082, 1174
XmnI GAANNNNTTC 2 cut(s) 103, 819
XspI CTAG 3 cut(s) 567, 741, 1190
Zsp2I ATGCAT 2 cut(s) 478, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.