RchiOBHm_Chr1g0332491

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001323
Physical Location & Seq
Reverse (-)
23777705 .. 23778046
342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56139

Sequence Viewer

Length: 342 bp
ATGGATCCAGTAAATAAATCTTTTAGTTTAGCTAGTTCTGTTCCAGCACCCAAGCTCGTGTCAGGATCATTCAACATCAGCAATGGTTCTAAACAATTCTACAGAGTAGTACATGAACCGGATGGTAGGGATTATGACCAAACAACCTTTGTCAATAGCAAGTTTCAAGATATGGGGTTATCTAGTGCTACAAAAGCAAGTTCTATTACTGTGGAAGATGCATCCTCTACAAGGAATCTAACAGGATTGCCCTCTTCTACAAGAGCTTCATCAATTCCAGATTCTGGTTGGAGGCCTCGTGGGGTTTTCGTCGTACACTTGCAAGAGCACCTTCCGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

113

Amino Acids

12.23

Weight (kDa)

8.12

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AclWI GGATC 2 cut(s) 12, 73
AfaI GTAC 2 cut(s) 111, 315
AfiI CCNNNNNNNGG 2 cut(s) 231, 284
AgsI TTSAA 2 cut(s) 73, 167
AluBI AGCT 3 cut(s) 32, 55, 266
AluI AGCT 3 cut(s) 32, 55, 266
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 2 cut(s) 12, 73
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 56, 297
Bbv12I GWGCWC 1 cut(s) 330
BccI CCATC 1 cut(s) 116
BfaI CTAG 2 cut(s) 33, 183
BfmI CTRYAG 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 208, 230
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 284
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 88
BseGI GGATG 2 cut(s) 127, 221
BseLI CCNNNNNNNGG 2 cut(s) 231, 284
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 8
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 231, 284
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 4, 65
BspANI GGCC 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 73
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 8
BssMI GATC 2 cut(s) 4, 65
BssSI CACGAG 2 cut(s) 56, 297
Bst2BI CACGAG 2 cut(s) 56, 297
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 259
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 127, 221
BstKTI GATC 2 cut(s) 7, 68
BstMBI GATC 2 cut(s) 4, 65
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 2 cut(s) 127, 221
CaiI CAGNNNCTG 1 cut(s) 284
Csp6I GTAC 2 cut(s) 110, 314
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 32, 55, 266, 295
CviKI_1 RGCY 4 cut(s) 32, 55, 266, 295
CviQI GTAC 2 cut(s) 110, 314
DpnI GATC 2 cut(s) 6, 67
DpnII GATC 2 cut(s) 4, 65
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 295
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 114, 135, 173
FalI AAGNNNNNCTT 1 cut(s) 315
FatI CATG 1 cut(s) 112
FokI GGATG 2 cut(s) 134, 208
FspBI CTAG 2 cut(s) 33, 183
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 116
HinfI GANTC 2 cut(s) 235, 281
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 63, 167, 278
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 221, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 2 cut(s) 4, 65
LpnPI CCDG 7 cut(s) 21, 48, 57, 132, 228, 270, 291
LweI GCATC 2 cut(s) 208, 230
MaeI CTAG 2 cut(s) 33, 183
MalI GATC 2 cut(s) 6, 67
MboI GATC 2 cut(s) 4, 65
MboII GAAGA 2 cut(s) 227, 246
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 95, 273
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 4 cut(s) 235, 262, 285, 306
Mph1103I ATGCAT 1 cut(s) 223
MspI CCGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 2 cut(s) 4, 65
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 223
PceI AGGCCT 1 cut(s) 295
PfeI GAWTC 2 cut(s) 235, 281
PflMI CCANNNNNTGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 111, 315
RsaNI GTAC 2 cut(s) 110, 314
Sau3AI GATC 2 cut(s) 4, 65
SduI GDGCHC 1 cut(s) 330
SetI ASST 5 cut(s) 34, 57, 149, 268, 333
SfaNI GCATC 2 cut(s) 208, 230
SfcI CTRYAG 1 cut(s) 100
Sse9I AATT 2 cut(s) 95, 273
SseBI AGGCCT 1 cut(s) 295
SspMI CTAG 2 cut(s) 33, 183
StuI AGGCCT 1 cut(s) 295
TaaI ACNGT 1 cut(s) 211
TasI AATT 2 cut(s) 95, 273
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 2 cut(s) 235, 281
TspDTI ATGAA 2 cut(s) 129, 258
TspGWI ACGGA 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XspI CTAG 2 cut(s) 33, 183
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.