RLG00000033873

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001323
Physical Location & Seq
Reverse (-)
33599310 .. 33600407
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033873

Sequence Viewer

Length: 1002 bp
ATGGACAGGGCCAACAGGCGTGCAGTGGGAGTTCCTCCTGCTCTATCTGATTCTTCATTACAAGTGTGTTCTGTCAGAGTTGGTGCACCATCCATACCATGGCAGGATCCAGTAAATAAATCTTTTAGTTTTGCTAGTTCTGTTCCAGCACCCAAGCTCGTGTCAGGATCATTCAACATCAGCAGTGGTTCTAAACAATTCCACAGAGTAATACATGAACCAGATGGTAGGGATAATGACCAAACAACCTTTGTCAATAGCAAGTTTCAAGATGTGGGATTATCTAGTGCTATAAAAGCAAGCTCTATTACTGTGGAAGATGCATCCTCTACAAGTGATTTAACAGGATTGGCCTCTTCGACAAGAGCTTCATCAATTCTAGATTCTGGTTGGAGGCCTCGTGGGGTTTTGGTTGCACACTTGCAAGAGCACCGGTCCGCTGTAAATGACATTGCCATATCAACTGATCATAGCTTCTTTGTGTGCGCATCTGATGATTCCACTGTCAAGGTATGGGATTTGAGAAAGTTGGAAAAGGACATCTCATTTAGAGGTCTTGGTAATGTAGTTGAGAGGTATTCATGTGTTGCTGATATCAAGGAGAAGGACACTAAAGAAAGGGCAATATGTAGCCTTTTGAATTTCTCTGCTGACAACTATACAAGTCAGATGGTTTTGTACAACACCCAAAATTGTGGGATCCATCTTTGGGATGTAAGAACAAAGTCAAATTCTTGGACATTGAAACCAACTTCGGAGAAGGGCCCTTGTGAAAATTGGTTTGTGTCAGGATCTTCGGGGGGTGTGCTCACTCTTTGGGATATGAGGTTCCTTATTGCTGTGAATTCATGGCAGTATTCTGCTATTTGCCCCATAGAGAAAACGTGTCTTTTTCTTCCTCCTCCAAATGCTTCTGTGTCTGCTGCTGCAAAGCCCCTTGTTTATGTTCATAGAACTGGTATGGATACATCAAGAGCTAATATGCAAAGCATTTTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

334

Amino Acids

36.39

Weight (kDa)

8.09

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 103 - 183 5e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 109 - 176 3.5e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 131 - 191 3.4e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 133 - 275 1.3e-08 WDR5 beta-propeller domain
WD40 PF00400 136 - 173 5e-09 WD domain, G-beta repeat
WD40_Prp19 PF24814 137 - 178 3.3e-06 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 137 - 176 3.4e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 99
AciI CCGC 1 cut(s) 438
AclWI GGATC 6 cut(s) 101, 114, 175, 694, 707, 799
AcsI RAATTY 3 cut(s) 640, 730, 844
AcvI CACGTG 1 cut(s) 999
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 2 cut(s) 99, 709
AflIII ACRYGT 1 cut(s) 884
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 4 cut(s) 175, 269, 640, 745
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 5 cut(s) 157, 303, 368, 474, 977
AluI AGCT 5 cut(s) 157, 303, 368, 474, 977
Alw21I GWGCWC 3 cut(s) 88, 432, 810
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 6 cut(s) 101, 114, 175, 694, 707, 799
AoxI GGCC 4 cut(s) 9, 351, 395, 763
ApaI GGGCCC 1 cut(s) 767
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 923, 926
ApoI RAATTY 3 cut(s) 640, 730, 844
AsiGI ACCGGT 1 cut(s) 432
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 4 cut(s) 9, 435, 763, 764
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 88, 767
BamHI GGATCC 2 cut(s) 106, 699
BanII GRGCYC 1 cut(s) 767
BauI CACGAG 2 cut(s) 158, 399
BbrPI CACGTG 1 cut(s) 999
Bbv12I GWGCWC 3 cut(s) 88, 432, 810
BbvI GCAGC 2 cut(s) 910, 913
BccI CCATC 4 cut(s) 97, 218, 664, 711
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 1 cut(s) 466
BfaI CTAG 3 cut(s) 135, 285, 380
BfuI GTATCC 1 cut(s) 958
BisI GCNGC 2 cut(s) 924, 927
BlsI GCNGC 2 cut(s) 925, 928
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 4 cut(s) 9, 435, 763, 764
BmiI GGNNCC 4 cut(s) 108, 701, 765, 830
BmsI GCATC 3 cut(s) 310, 332, 497
BsaAI YACGTR 1 cut(s) 999
BsaJI CCNNGG 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 709
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 110, 961
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 3 cut(s) 89, 323, 718
BseLI CCNNNNNNNGG 2 cut(s) 99, 709
BseMI GCAATG 1 cut(s) 450
BseNI ACTGG 2 cut(s) 110, 961
BseRI GAGGAG 1 cut(s) 891
BseSI GKGCMC 2 cut(s) 88, 767
BseXI GCAGC 2 cut(s) 910, 913
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 4 cut(s) 11, 353, 397, 765
BshTI ACCGGT 1 cut(s) 432
BsiHKAI GWGCWC 3 cut(s) 88, 432, 810
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 99, 709
BsnI GGCC 4 cut(s) 11, 353, 397, 765
Bsp120I GGGCCC 1 cut(s) 763
Bsp1286I GDGCHC 4 cut(s) 88, 432, 767, 810
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 5 cut(s) 106, 167, 466, 699, 791
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 438
BspANI GGCC 4 cut(s) 11, 353, 397, 765
BspLI GGNNCC 4 cut(s) 108, 701, 765, 830
BspPI GGATC 6 cut(s) 101, 114, 175, 694, 707, 799
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 2 cut(s) 110, 961
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 5 cut(s) 106, 167, 466, 699, 791
BssSI CACGAG 2 cut(s) 158, 399
BssT1I CCWWGG 1 cut(s) 98
Bst2BI CACGAG 2 cut(s) 158, 399
Bst4CI ACNGT 2 cut(s) 313, 505
Bst6I CTCTTC 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 999
BstC8I GCNNGC 2 cut(s) 21, 301
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 3 cut(s) 89, 323, 718
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 5 cut(s) 109, 170, 469, 702, 794
BstMBI GATC 5 cut(s) 106, 167, 466, 699, 791
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSLI GKGCMC 2 cut(s) 88, 767
BstV1I GCAGC 2 cut(s) 910, 913
BstX2I RGATCY 3 cut(s) 106, 699, 791
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 3 cut(s) 106, 699, 791
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 4 cut(s) 11, 353, 397, 765
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 3 cut(s) 89, 323, 718
BtsI GCAGTG 2 cut(s) 30, 190
BtsIMutI CAGTG 3 cut(s) 30, 190, 501
Cac8I GCNNGC 2 cut(s) 21, 301
CfoI GCGC 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 4 cut(s) 9, 435, 763, 764
CpoI CGGWCCG 1 cut(s) 435
Csp6I GTAC 1 cut(s) 679
CspAI ACCGGT 1 cut(s) 432
CspI CGGWCCG 1 cut(s) 435
CviAII CATG 4 cut(s) 99, 215, 582, 849
CviQI GTAC 1 cut(s) 679
DpnI GATC 5 cut(s) 108, 169, 468, 701, 793
DpnII GATC 5 cut(s) 106, 167, 466, 699, 791
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 767
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 435
Eco72I CACGTG 1 cut(s) 999
EcoO109I RGGNCCY 2 cut(s) 763, 764
EcoRI GAATTC 1 cut(s) 844
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 767
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 4 cut(s) 102, 218, 585, 852
FatI CATG 4 cut(s) 98, 214, 581, 848
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 924, 927
FokI GGATG 3 cut(s) 76, 310, 725
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 2 cut(s) 924, 927
FspAI RTGCGCAY 1 cut(s) 487
FspBI CTAG 3 cut(s) 135, 285, 380
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 1 cut(s) 487
GluI GCNGC 2 cut(s) 924, 927
HaeIII GGCC 4 cut(s) 11, 353, 397, 765
HapII CCGG 1 cut(s) 433
HhaI GCGC 1 cut(s) 488
Hin1II CATG 4 cut(s) 102, 218, 585, 852
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HinfI GANTC 3 cut(s) 50, 383, 497
HpaII CCGG 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 5 cut(s) 49, 77, 493, 669, 757
Hpy188III TCNNGA 5 cut(s) 165, 269, 380, 789, 972
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 598, 754
HpyCH4III ACNGT 2 cut(s) 313, 505
HpyCH4IV ACGT 2 cut(s) 884, 998
HpyCH4V TGCA 7 cut(s) 23, 86, 323, 416, 424, 929, 985
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 2 cut(s) 884, 998
Hsp92II CATG 4 cut(s) 102, 218, 585, 852
HspAI GCGC 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 5 cut(s) 106, 167, 466, 699, 791
Lsp1109I GCAGC 2 cut(s) 910, 913
LweI GCATC 3 cut(s) 310, 332, 497
MaeI CTAG 3 cut(s) 135, 285, 380
MaeII ACGT 2 cut(s) 884, 998
MalI GATC 5 cut(s) 108, 169, 468, 701, 793
MboI GATC 5 cut(s) 106, 167, 466, 699, 791
MboII GAAGA 5 cut(s) 45, 329, 348, 786, 887
MflI RGATCY 3 cut(s) 106, 699, 791
MhlI GDGCHC 4 cut(s) 88, 432, 767, 810
MluCI AATT 7 cut(s) 197, 375, 640, 691, 730, 775, 844
MmeI TCCRAC 2 cut(s) 371, 510
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 296
NcoI CCATGG 1 cut(s) 98
NdeII GATC 5 cut(s) 106, 167, 466, 699, 791
NlaIII CATG 4 cut(s) 102, 218, 585, 852
NlaIV GGNNCC 4 cut(s) 108, 701, 765, 830
NsbI TGCGCA 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 325
PceI AGGCCT 1 cut(s) 397
PfeI GAWTC 3 cut(s) 50, 383, 497
PflMI CCANNNNNTGG 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 2 cut(s) 925, 928
PmaCI CACGTG 1 cut(s) 999
PmlI CACGTG 1 cut(s) 999
Ppu21I YACGTR 1 cut(s) 999
PspCI CACGTG 1 cut(s) 999
PspN4I GGNNCC 4 cut(s) 108, 701, 765, 830
PspOMI GGGCCC 1 cut(s) 763
PspPI GGNCC 4 cut(s) 9, 435, 763, 764
PsuI RGATCY 3 cut(s) 106, 699, 791
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
Rsr2I CGGWCCG 1 cut(s) 435
RsrII CGGWCCG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 924, 927
Sau3AI GATC 5 cut(s) 106, 167, 466, 699, 791
Sau96I GGNCC 4 cut(s) 9, 435, 763, 764
SduI GDGCHC 4 cut(s) 88, 432, 767, 810
SfaNI GCATC 3 cut(s) 310, 332, 497
SinI GGWCC 1 cut(s) 435
Sse9I AATT 7 cut(s) 197, 375, 640, 691, 730, 775, 844
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 438
SspMI CTAG 3 cut(s) 135, 285, 380
StuI AGGCCT 1 cut(s) 397
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 313, 505
TaiI ACGT 2 cut(s) 887, 1001
TaqI TCGA 1 cut(s) 359
TasI AATT 7 cut(s) 197, 375, 640, 691, 730, 775, 844
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 3 cut(s) 50, 383, 497
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 3 cut(s) 30, 190, 508
TseI GCWGC 2 cut(s) 923, 926
TspDTI ATGAA 6 cut(s) 45, 231, 360, 570, 837, 938
TspRI CASTG 3 cut(s) 30, 190, 508
Van91I CCANNNNNTGG 1 cut(s) 99
VneI GTGCAC 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 3 cut(s) 640, 730, 844
XbaI TCTAGA 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XspI CTAG 3 cut(s) 135, 285, 380
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.