Rorug01G0094200

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001323
Physical Location & Seq
Reverse (-)
15528731 .. 15529484
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0094200.1

Sequence Viewer

Length: 588 bp
ATGGCTTATGAACCAATGATCAACCTTATAGCTGGGGTCGATGAGTGGGAGCTGATTAACAGGCCAATTGCACCTCCAAGGTTTAGAAGACTAACCGGAAGGCCGAAAATGTCGAGAAACAAACAACCAGGTGAGGAGCCACCGCTACCTGAAACCACAAAGCTGCCTAAATCTTATTATTCACAGATTAAATGTGGAATGTGTGGTTTGAAATGTCATAATCAGAGGACATGTGCTAGACGTAATCAGCCTCAAAACCTAAATGTGAGAGATGAAGTTCCATCTGACAATATGGAAACCTCAAACGTGAGACCTGAAATCCCAAGTCAGCGTACTGGAGCCCCACCTGAGAACTTGGGGATGAATGTCAATGTGAACTTAAATTTGAATGTGAATGGGGGAAGTGATAATGTGATAAATGTTCCAATTGATCCTTTGCCATCTTTGACCGTCCAAGTCCCCACTATTAATGCTCCAGATGATAATTTGCAGAATCTGCAAATGCAAAATCGGAATTTGATAAATGTTCCAATTGATCCTTTGCCATCTACAATTATTATACATGCCGGTTTAGTTTTTAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

195

Amino Acids

21.74

Weight (kDa)

8.4

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 425, 530
AcsI RAATTY 2 cut(s) 382, 514
AfaI GTAC 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 211, 388
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 3 cut(s) 32, 52, 163
AluI AGCT 3 cut(s) 32, 52, 163
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 425, 530
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 2 cut(s) 62, 101
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 382, 514
AseI ATTAAT 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 150
BccI CCATC 3 cut(s) 289, 448, 553
BciT130I CCWGG 1 cut(s) 129
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 138, 340
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 2 cut(s) 357, 459
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 32
BshFI GGCC 2 cut(s) 64, 103
BsiSI CCGG 2 cut(s) 96, 567
BslFI GGGAC 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 2 cut(s) 64, 103
Bso31I GGTCTC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 3 cut(s) 18, 430, 535
BspACI CCGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 64, 103
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 138, 340
BspPI GGATC 2 cut(s) 425, 530
BspTNI GGTCTC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 18, 430, 535
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 451
BstAPI GCANNNNNTGC 1 cut(s) 496
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 3 cut(s) 21, 433, 538
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 3 cut(s) 18, 430, 535
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 2 cut(s) 234, 566
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 64, 103
BtsCI GGATG 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 566
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 1 cut(s) 333
CviAII CATG 2 cut(s) 231, 563
CviJI RGCY 9 cut(s) 5, 32, 52, 64, 103, 139, 163, 250, 341
CviKI_1 RGCY 9 cut(s) 5, 32, 52, 64, 103, 139, 163, 250, 341
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 20, 432, 537
DpnII GATC 3 cut(s) 18, 430, 535
DraI TTTAAA 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 234, 566
FaiI YATR 7 cut(s) 9, 29, 219, 232, 293, 560, 564
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 230, 562
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 164
GsaI CCCAGC 1 cut(s) 36
GsuI CTGGAG 2 cut(s) 357, 459
HaeIII GGCC 2 cut(s) 64, 103
HapII CCGG 2 cut(s) 96, 567
Hin1II CATG 2 cut(s) 234, 566
HinfI GANTC 1 cut(s) 493
HpaII CCGG 2 cut(s) 96, 567
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 225, 286, 513
Hpy188III TCNNGA 2 cut(s) 114, 476
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 2 cut(s) 241, 306
HpyCH4V TGCA 4 cut(s) 71, 490, 499, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 2 cut(s) 241, 306
Hsp92II CATG 2 cut(s) 234, 566
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 430, 535
LmnI GCTCC 4 cut(s) 49, 136, 338, 478
Lsp1109I GCAGC 1 cut(s) 150
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 241, 306
MalI GATC 3 cut(s) 20, 432, 537
MboI GATC 3 cut(s) 18, 430, 535
MboII GAAGA 1 cut(s) 99
MfeI CAATTG 3 cut(s) 66, 426, 531
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 7 cut(s) 66, 382, 426, 484, 514, 531, 552
MnlI CCTC 5 cut(s) 84, 127, 219, 261, 310
MseI TTAA 5 cut(s) 57, 189, 380, 468, 579
MspI CCGG 2 cut(s) 96, 567
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 3 cut(s) 66, 426, 531
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 496
NdeII GATC 3 cut(s) 18, 430, 535
NlaIII CATG 2 cut(s) 234, 566
NlaIV GGNNCC 2 cut(s) 138, 340
NspI RCATGY 2 cut(s) 234, 566
PciI ACATGT 1 cut(s) 230
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 1 cut(s) 165
PscI ACATGT 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 138, 340
PstNI CAGNNNCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 5 cut(s) 57, 189, 380, 468, 579
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 18, 430, 535
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 343
SexAI ACCWGGT 1 cut(s) 127
Sse9I AATT 7 cut(s) 66, 382, 426, 484, 514, 531, 552
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 2 cut(s) 244, 309
TaqI TCGA 2 cut(s) 39, 113
TasI AATT 7 cut(s) 66, 382, 426, 484, 514, 531, 552
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 5 cut(s) 57, 189, 380, 468, 579
Tru9I TTAA 5 cut(s) 57, 189, 380, 468, 579
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 24, 288, 377
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 382, 514
XceI RCATGY 2 cut(s) 234, 566
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.