Rorug01G0094300

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001323
Physical Location & Seq
Reverse (-)
15529533 .. 15530167
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0094300.1

Sequence Viewer

Length: 357 bp
ATGAATATTCATGCAATAGCAAGGAAGAAAGGTATTTTGGGATTGTTGGAGGAGATTAGAGTTGCCTTAATAGTGAGGTTATCAAATAGAAGAAATTCTGGGGCAAAATGGAGGCGTAAGATAGGTCCAAGGGTTGAGAAGTTGTTGAAAAAGAACGCAGATTGGAGCCAAGAATATAGAGCATTGGAGTCTAATAACATGAGGTTTGAGATACAAGGCAGAGGTGTTACTTGTAATTCAGGTGTTATTTCTCAACATGCTGTGCAATTGGACAACATGGCATGTACATGTAAAAGATGGGATTTGAGTGGACTTCCCTCTGGACGTGCTATTGCAGCAATTTACTCTAAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

10.56

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 291
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 347
Bsp1407I TGTACA 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 3 cut(s) 260, 285, 291
BstV1I GCAGC 1 cut(s) 347
BtrI CACGTC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 285
CviAII CATG 6 cut(s) 11, 199, 257, 277, 282, 288
CviJI RGCY 1 cut(s) 168
CviKI_1 RGCY 1 cut(s) 168
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 6 cut(s) 14, 202, 260, 280, 285, 291
FaiI YATR 7 cut(s) 12, 177, 200, 258, 278, 283, 289
FatI CATG 6 cut(s) 10, 198, 256, 276, 281, 287
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
Hin1II CATG 6 cut(s) 14, 202, 260, 280, 285, 291
HinfI GANTC 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 14, 265, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 6 cut(s) 14, 202, 260, 280, 285, 291
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 3 cut(s) 84, 225, 306
Lsp1109I GCAGC 1 cut(s) 347
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 226
MboII GAAGA 2 cut(s) 37, 102
MfeI CAATTG 1 cut(s) 266
MluCI AATT 4 cut(s) 94, 235, 266, 339
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 6 cut(s) 43, 69, 105, 195, 215, 328
MroXI GAANNNNTTC 1 cut(s) 94
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 286
MunI CAATTG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 335
NlaIII CATG 6 cut(s) 14, 202, 260, 280, 285, 291
NlaIV GGNNCC 1 cut(s) 167
NspI RCATGY 3 cut(s) 260, 285, 291
PciI ACATGT 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 336
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 197
SetI ASST 7 cut(s) 34, 80, 127, 206, 226, 244, 328
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 286
Sse9I AATT 4 cut(s) 94, 235, 266, 339
SspI AATATT 1 cut(s) 7
StyI CCWWGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 328
TasI AATT 4 cut(s) 94, 235, 266, 339
TatI WGTACW 1 cut(s) 284
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 1 cut(s) 94
XceI RCATGY 3 cut(s) 260, 285, 291
XmnI GAANNNNTTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.