Rorug01G0101400

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001323
Physical Location & Seq
Reverse (-)
16887368 .. 16888990
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0101400.1

Sequence Viewer

Length: 834 bp
ATGAGAGCAGCCTTGTTTACCAGTTGCAGCTTTGCCTGGACTTATCAGCCAAAAGCAATCCCCTCCCACAATTTGCTTGTTCAATCTTCTTCACTAGAACATAGAGGTTGCAGCGCAAGATCCGAAGCGAGTTCAAGAGAAAGCGGTTTGGTTATTGGAGAAGCTGAGAAAGTCTCTGGGATTTTGAAGAGAAGATCAGTGGTGCTGTCTGGAGCTTCTTTGGTTTCTTCTGCAGTGTTGGGTTTTCCAGGAGAGGGTTTGGCCGTGATTAAACAGGGTCTCCTAGCAGGAAGGATTCCCGGTCTGTCCGAACCAGATGAACAAGGTTGGAGGACATACCGCAGACCAGATGAGAAGTCTGGAGGGCACGGTGTGGGTTGGAGCCCTATCATCCCTTATGTCTTCTCTGTTCCTCAAGATTGGGAAGAGGTTCCAGTATCAATAGCTGATCTTGGTGGTACAGAGATCGACCTGAGATTTGGTAGCGTCAAGGAGGGACGCCTGTCGGTCATTGTTGCTCCTGTTCTGAGATTTGCAGATAATCTTGTTGGAGATGCAACAATTGAAAAAATTGGCCGTCCAGAGACGGTGATCAATGCATTTGGACCCGAAGTTATTGGGGAGAATGTGGAAGGGAAGGTAATGAGCATAAATGTTGTTCAAGATTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGCTCTGATCACAGCAACTGCAGCAGGGAATCGCCTGTACTTGTTTAATGTAACGGGAAGTGGTCTTCAATGGAAGAGGCATTACAAAGATTTGAAGAAGATAGCAGACTCCTTTCGTGTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

277

Amino Acids

30.01

Weight (kDa)

6.98

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 133 - 276 5.8e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 340
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 2 cut(s) 261, 574
AcyI GRCGYC 1 cut(s) 499
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 460, 746
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 7 cut(s) 83, 135, 187, 566, 662, 776, 802
AjnI CCWGG 2 cut(s) 35, 247
AluBI AGCT 4 cut(s) 30, 164, 215, 446
AluI AGCT 4 cut(s) 30, 164, 215, 446
Alw26I GTCTC 3 cut(s) 178, 284, 578
AlwI GGATC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 2 cut(s) 261, 574
ApeKI GCWGC 4 cut(s) 8, 27, 111, 728
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp700I GAANNNNTTC 1 cut(s) 429
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 605
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 601
AvaII GGWCC 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 773, 805
BbsI GAAGAC 2 cut(s) 394, 764
BbvI GCAGC 4 cut(s) 20, 39, 123, 740
BceAI ACGGC 2 cut(s) 248, 561
BciT130I CCWGG 2 cut(s) 37, 249
BclI TGATCA 2 cut(s) 591, 714
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 178, 284, 578
BfaI CTAG 2 cut(s) 95, 284
BfmI CTRYAG 2 cut(s) 231, 726
BisI GCNGC 4 cut(s) 9, 28, 112, 729
BlsI GCNGC 4 cut(s) 10, 29, 113, 730
Bme1390I CCNGG 3 cut(s) 37, 249, 300
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 4 cut(s) 383, 432, 607, 699
BmrFI CCNGG 3 cut(s) 37, 249, 300
BmsI GCATC 1 cut(s) 544
BoxI GACNNNNGTC 1 cut(s) 502
BpiI GAAGAC 2 cut(s) 394, 764
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 2 cut(s) 231, 381
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 21, 434, 685
BseBI CCWGG 2 cut(s) 37, 249
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 3 cut(s) 156, 464, 518
BseNI ACTGG 3 cut(s) 21, 434, 685
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 4 cut(s) 20, 39, 123, 740
BshFI GGCC 2 cut(s) 263, 576
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 3 cut(s) 178, 284, 578
BsmBI CGTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 2 cut(s) 263, 576
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 369, 386
Bsp143I GATC 6 cut(s) 119, 194, 448, 465, 591, 714
BspACI CCGC 2 cut(s) 144, 340
BspANI GGCC 2 cut(s) 263, 576
BspCNI CTCAG 3 cut(s) 157, 465, 519
BspLI GGNNCC 4 cut(s) 383, 432, 607, 699
BspMAI CTGCAG 2 cut(s) 235, 730
BspPI GGATC 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 284
BsrI ACTGG 3 cut(s) 21, 434, 685
BssMI GATC 6 cut(s) 119, 194, 448, 465, 591, 714
BssNI GRCGYC 1 cut(s) 499
Bst2UI CCWGG 2 cut(s) 37, 249
Bst4CI ACNGT 2 cut(s) 371, 589
Bst6I CTCTTC 3 cut(s) 182, 420, 776
BstACI GRCGYC 1 cut(s) 499
BstDEI CTNAG 3 cut(s) 165, 473, 527
BstF5I GGATG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 6 cut(s) 122, 197, 451, 468, 594, 717
BstMAI GTCTC 3 cut(s) 178, 284, 578
BstMBI GATC 6 cut(s) 119, 194, 448, 465, 591, 714
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNI CCWGG 2 cut(s) 37, 249
BstPAI GACNNNNGTC 1 cut(s) 502
BstSCI CCNGG 3 cut(s) 35, 247, 298
BstSFI CTRYAG 2 cut(s) 231, 726
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 20, 39, 123, 740
BstV2I GAAGAC 2 cut(s) 394, 764
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 2 cut(s) 263, 576
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 204, 240
CaiI CAGNNNCTG 1 cut(s) 725
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 2 cut(s) 475, 507
Csp6I GTAC 2 cut(s) 459, 745
CviAII CATG 1 cut(s) 707
CviQI GTAC 2 cut(s) 459, 745
DdeI CTNAG 3 cut(s) 165, 473, 527
DpnI GATC 6 cut(s) 121, 196, 450, 467, 593, 716
DpnII GATC 6 cut(s) 119, 194, 448, 465, 591, 714
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 2 cut(s) 261, 574
Eam1104I CTCTTC 3 cut(s) 182, 420, 776
EarI CTCTTC 3 cut(s) 182, 420, 776
Eco24I GRGCYC 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 35, 247
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 1 cut(s) 710
FaiI YATR 7 cut(s) 102, 337, 399, 650, 679, 690, 708
FaqI GGGAC 1 cut(s) 510
FatI CATG 1 cut(s) 706
FbaI TGATCA 2 cut(s) 591, 714
Fnu4HI GCNGC 4 cut(s) 9, 28, 112, 729
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 4 cut(s) 9, 28, 112, 729
FspBI CTAG 2 cut(s) 95, 284
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 9, 28, 112, 729
GsuI CTGGAG 2 cut(s) 231, 381
HaeIII GGCC 2 cut(s) 263, 576
HapII CCGG 1 cut(s) 300
HgaI GACGC 2 cut(s) 475, 507
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 1 cut(s) 710
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 4 cut(s) 295, 665, 736, 815
HpaII CCGG 1 cut(s) 300
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 5 cut(s) 124, 310, 528, 714, 833
Hpy188III TCNNGA 7 cut(s) 135, 210, 360, 416, 581, 662, 669
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 3 cut(s) 285, 626, 631
HpyCH4III ACNGT 2 cut(s) 371, 589
HpyCH4V TGCA 7 cut(s) 27, 111, 233, 536, 557, 599, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 3 cut(s) 165, 473, 527
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 1 cut(s) 710
HspAI GCGC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 591, 714
Kzo9I GATC 6 cut(s) 119, 194, 448, 465, 591, 714
LmnI GCTCC 4 cut(s) 212, 381, 523, 697
Lsp1109I GCAGC 4 cut(s) 20, 39, 123, 740
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 95, 284
MaeIII GTNAC 1 cut(s) 757
MalI GATC 6 cut(s) 121, 196, 450, 467, 593, 716
MboI GATC 6 cut(s) 119, 194, 448, 465, 591, 714
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 369, 386
MluCI AATT 3 cut(s) 70, 561, 570
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 4 cut(s) 308, 359, 529, 675
Mph1103I ATGCAT 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 2 cut(s) 270, 753
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 3 cut(s) 37, 249, 300
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 2 cut(s) 37, 249
MwoI GCNNNNNNNGC 1 cut(s) 728
NciI CCSGG 1 cut(s) 300
NdeII GATC 6 cut(s) 119, 194, 448, 465, 591, 714
NlaIII CATG 1 cut(s) 710
NlaIV GGNNCC 4 cut(s) 383, 432, 607, 699
NsiI ATGCAT 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 3 cut(s) 295, 665, 736
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 10, 29, 113, 730
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PshAI GACNNNNGTC 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 35, 247
PspGI CCWGG 2 cut(s) 35, 247
PspN4I GGNNCC 4 cut(s) 383, 432, 607, 699
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 2 cut(s) 235, 730
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 460, 746
RsaNI GTAC 2 cut(s) 459, 745
SaqAI TTAA 2 cut(s) 270, 753
SatI GCNGC 4 cut(s) 9, 28, 112, 729
Sau3AI GATC 6 cut(s) 119, 194, 448, 465, 591, 714
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 3 cut(s) 37, 249, 300
SduI GDGCHC 2 cut(s) 369, 386
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 2 cut(s) 231, 726
SinI GGWCC 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 3 cut(s) 70, 561, 570
SsiI CCGC 2 cut(s) 144, 340
SspMI CTAG 2 cut(s) 95, 284
StyD4I CCNGG 3 cut(s) 35, 247, 298
TaaI ACNGT 2 cut(s) 371, 589
TaqI TCGA 1 cut(s) 468
TaqII GACCGA 1 cut(s) 496
TasI AATT 3 cut(s) 70, 561, 570
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 3 cut(s) 295, 665, 736
Tru1I TTAA 2 cut(s) 270, 753
Tru9I TTAA 2 cut(s) 270, 753
TscAI CASTG 2 cut(s) 204, 240
TseI GCWGC 4 cut(s) 8, 27, 111, 728
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 2 cut(s) 204, 240
VpaK11BI GGWCC 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 2 cut(s) 95, 284
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.