Rh1DG130100

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001323
Physical Location & Seq
Reverse (-)
27083624 .. 27084769
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG130100.1

Sequence Viewer

Length: 1146 bp
ATGATGAGCAATAGGTCAACTCAGGACACTAGCACTGGACATGGAACTCCTTCAAACATCCATGCTGTTAGAGGTAAATCTTCTCGGGACATGATTGCAATGCAGAACATGAATTTGACAAAGGGCTCACTGGGAAAGAAAGTAGAGATGGATAAAGGTTTCAAACGCGATCAATTTGAACTTCTCGGTGATATCAATACCCTTCTTAGGGATGTTCAACAAAGTAATCATTATTCTAATACGAAGCCAGTGGTGGAGGACAACACCAAGTCTGCATTTTCCCAAAATCTTGGAAACTATGGCATGCAATCTCCTGGTGAATTACTTCAGACTATCTCCCATGCGTTTAGGAGAAATGATCATCCTTTTCTAAAAAAGATTACAATGAATGATTTGAATTCATTGATATCCAAGTATGACAGCCAGTCAGATACCTTTGGTATGCCTTTTTTACCATTACCTGAAGACAGTTTGAGATGTGAGGGCATTGTTCTGATTACCTCTTTGCTATGTTCCTGCATACGCAATGTCAAATTGCCTCATTTAAGGAGGAGGGCGATACTTTTGCTGAAGTCATCTGCATTGTATATTGATGATGAAAACCGGTTGCAGCGTGTTATTCCATATGTTGTTGCAATGCTTTCAGATCAAGCTGCAATTGTGCATTGTGCAGCCTTGGAGATATTATGTGACATTCTCCCCTTAGTTCGAGATTTTCCTCCTAGTGATGCAAAAAAAATTCCGGAGTATGTTCTGCCAATGCTTTCCATGCTTCCTGATGATACAGAGGAAAGTGTGAGTATATGTTATGCCAGTACTATAGCTCAGCTGGCACTAACTGCTTATGGTTTCTTAGTTCACTCAATAACCTTGAGTGAGGCTGGTGTGCTTGATGAATTAAGTTCTCCAAAGAAGCTACTGTCATCATCTAGTGAGACATCTGGTCAGCTCCACAAGGTAAATAATGATGCACAGCTTGCCCAGTTGAGGAAGTCCATAGCTGCAGTCATTCAAGAGCTTGTTATGGGTCCCAAGCAAACTCCCAATATCAGGAGAGCACTCCTTCAGGATATCAGCAATCTATGCTGCTTCTTTGTCCAGAGGCAGAGTAATTTTGTTACCCATTCTCCCTGCTTTTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

381

Amino Acids

42.35

Weight (kDa)

7.12

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS15-like_hel PF22956 166 - 371 2.7e-52 VPS15-like, helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 742
AcsI RAATTY 3 cut(s) 112, 397, 738
AcuI CTGAAG 4 cut(s) 311, 483, 590, 1049
AfaI GTAC 1 cut(s) 817
AfiI CCNNNNNNNGG 4 cut(s) 207, 208, 987, 1050
AgeI ACCGGT 1 cut(s) 603
AgsI TTSAA 6 cut(s) 54, 163, 179, 218, 397, 1013
AhdI GACNNNNNGTC 2 cut(s) 424, 942
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 8 cut(s) 653, 824, 829, 916, 949, 976, 1001, 1018
AluI AGCT 8 cut(s) 653, 824, 829, 916, 949, 976, 1001, 1018
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 1 cut(s) 929
Ama87I CYCGRG 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 742
ApeKI GCWGC 5 cut(s) 610, 653, 671, 1001, 1086
ApoI RAATTY 3 cut(s) 112, 397, 738
AsiGI ACCGGT 1 cut(s) 603
Asp700I GAANNNNTTC 2 cut(s) 49, 324
AspS9I GGNCC 1 cut(s) 1028
AsuHPI GGTGA 2 cut(s) 200, 329
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 1028
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 5 cut(s) 622, 640, 683, 988, 1073
BccI CCATC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 929
BfaI CTAG 3 cut(s) 30, 723, 930
BfmI CTRYAG 2 cut(s) 819, 1002
BisI GCNGC 5 cut(s) 611, 654, 672, 1002, 1087
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 5 cut(s) 612, 655, 673, 1003, 1088
BmcAI AGTACT 1 cut(s) 817
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 1028
BmeRI GACNNNNNGTC 2 cut(s) 424, 942
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 2 cut(s) 1029, 1030
BmrFI CCNGG 1 cut(s) 315
BmrI ACTGGG 2 cut(s) 140, 976
BmsI GCATC 2 cut(s) 718, 958
BmuI ACTGGG 2 cut(s) 140, 976
BpiI GAAGAC 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 825
BpuEI CTTGAG 1 cut(s) 892
BsaJI CCNNGG 1 cut(s) 675
BsaWI WCCGGW 2 cut(s) 603, 742
BsaXI ACNNNNNCTCC 2 cut(s) 1111, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 208, 987, 1050
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 6 cut(s) 40, 135, 248, 424, 813, 982
Bse3DI GCAATG 3 cut(s) 105, 532, 642
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 3 cut(s) 57, 217, 361
BseLI CCNNNNNNNGG 4 cut(s) 207, 208, 987, 1050
BseMI GCAATG 3 cut(s) 105, 532, 642
BseMII CTCAG 2 cut(s) 35, 839
BseNI ACTGG 6 cut(s) 40, 135, 248, 424, 813, 982
BseRI GAGGAG 1 cut(s) 565
BseXI GCAGC 5 cut(s) 622, 640, 683, 988, 1073
BsgI GTGCAG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 1060
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 604, 743
BslFI GGGAC 2 cut(s) 101, 1014
BslI CCNNNNNNNGG 4 cut(s) 207, 208, 987, 1050
BsmAI GTCTC 1 cut(s) 929
BsmFI GGGAC 2 cut(s) 101, 1014
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 128, 1060
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 3 cut(s) 169, 358, 646
Bsp1720I GCTNAGC 1 cut(s) 825
BspCNI CTCAG 2 cut(s) 34, 838
BspEI TCCGGA 1 cut(s) 742
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 1029, 1030
BspMAI CTGCAG 1 cut(s) 1006
BsrDI GCAATG 3 cut(s) 105, 532, 642
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 6 cut(s) 40, 135, 248, 424, 813, 982
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 3 cut(s) 169, 358, 646
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 470, 921
BstAPI GCANNNNNTGC 3 cut(s) 839, 977, 1083
BstC8I GCNNGC 3 cut(s) 305, 831, 978
BstDEI CTNAG 5 cut(s) 21, 206, 703, 825, 853
BstF5I GGATG 3 cut(s) 57, 217, 361
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 3 cut(s) 172, 361, 649
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 3 cut(s) 169, 358, 646
BstMWI GCNNNNNNNGC 5 cut(s) 769, 830, 839, 977, 1083
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 819, 1002
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 5 cut(s) 622, 640, 683, 988, 1073
BstV2I GAAGAC 1 cut(s) 471
BstXI CCANNNNNNTGG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 57, 217, 361
BtsIMutI CAGTG 3 cut(s) 33, 128, 255
Cac8I GCNNGC 3 cut(s) 305, 831, 978
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 816
CspAI ACCGGT 1 cut(s) 603
CviAII CATG 7 cut(s) 41, 62, 91, 109, 304, 341, 769
CviQI GTAC 1 cut(s) 816
DdeI CTNAG 5 cut(s) 21, 206, 703, 825, 853
DpnI GATC 3 cut(s) 171, 360, 648
DpnII GATC 3 cut(s) 169, 358, 646
DriI GACNNNNNGTC 2 cut(s) 424, 942
Eam1105I GACNNNNNGTC 2 cut(s) 424, 942
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 128
Eco32I GATATC 3 cut(s) 193, 408, 1072
Eco47I GGWCC 1 cut(s) 1028
Eco57I CTGAAG 4 cut(s) 311, 483, 590, 1049
Eco88I CYCGRG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 1028
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 313
EcoRV GATATC 3 cut(s) 193, 408, 1072
EcoT14I CCWWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 7 cut(s) 44, 65, 94, 112, 307, 344, 772
FaqI GGGAC 2 cut(s) 101, 1014
FatI CATG 7 cut(s) 40, 61, 90, 108, 303, 340, 768
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 5 cut(s) 611, 654, 672, 1002, 1087
FokI GGATG 3 cut(s) 44, 224, 348
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 611, 654, 672, 1002, 1087
FspBI CTAG 3 cut(s) 30, 723, 930
GluI GCNGC 5 cut(s) 611, 654, 672, 1002, 1087
HapII CCGG 2 cut(s) 604, 743
Hin1II CATG 7 cut(s) 44, 65, 94, 112, 307, 344, 772
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HpaII CCGG 2 cut(s) 604, 743
HphI GGTGA 2 cut(s) 200, 329
Hpy166II GTNNAC 2 cut(s) 18, 859
Hpy188I TCNGA 5 cut(s) 330, 430, 495, 646, 1141
Hpy188III TCNNGA 9 cut(s) 23, 86, 710, 743, 776, 1013, 1051, 1067, 1099
Hpy8I GTNNAC 2 cut(s) 18, 859
HpyAV CCTTC 3 cut(s) 60, 212, 1073
HpyCH4III ACNGT 2 cut(s) 470, 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 769, 830, 839, 977, 1083
HpyF3I CTNAG 5 cut(s) 21, 206, 703, 825, 853
Hsp92II CATG 7 cut(s) 44, 65, 94, 112, 307, 344, 772
KflI GGGWCCC 1 cut(s) 1028
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 169, 358, 646
LmnI GCTCC 1 cut(s) 954
Lsp1109I GCAGC 5 cut(s) 622, 640, 683, 988, 1073
LweI GCATC 2 cut(s) 718, 958
MaeI CTAG 3 cut(s) 30, 723, 930
MaeIII GTNAC 2 cut(s) 689, 1117
MalI GATC 3 cut(s) 171, 360, 648
MboI GATC 3 cut(s) 169, 358, 646
MboII GAAGA 2 cut(s) 72, 476
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 128, 1060
MluCI AATT 9 cut(s) 112, 173, 320, 397, 533, 657, 738, 896, 1111
MroI TCCGGA 1 cut(s) 742
MroXI GAANNNNTTC 2 cut(s) 49, 324
MseI TTAA 2 cut(s) 545, 899
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 2 cut(s) 604, 743
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 769, 830, 839, 977, 1083
NdeI CATATG 1 cut(s) 625
NdeII GATC 3 cut(s) 169, 358, 646
NlaIII CATG 7 cut(s) 44, 65, 94, 112, 307, 344, 772
NlaIV GGNNCC 2 cut(s) 1029, 1030
NmuCI GTSAC 1 cut(s) 689
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PdmI GAANNNNTTC 2 cut(s) 49, 324
PinAI ACCGGT 1 cut(s) 603
PkrI GCNGC 5 cut(s) 612, 655, 673, 1003, 1088
PpuMI RGGWCCY 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 1028
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 1029, 1030
PspPI GGNCC 1 cut(s) 1028
PspPPI RGGWCCY 1 cut(s) 1028
PstI CTGCAG 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 1 cut(s) 817
RsaNI GTAC 1 cut(s) 816
SaqAI TTAA 2 cut(s) 545, 899
SatI GCNGC 5 cut(s) 611, 654, 672, 1002, 1087
Sau3AI GATC 3 cut(s) 169, 358, 646
Sau96I GGNCC 1 cut(s) 1028
ScaI AGTACT 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 128, 1060
SfaNI GCATC 2 cut(s) 718, 958
SfcI CTRYAG 2 cut(s) 819, 1002
SinI GGWCC 1 cut(s) 1028
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
SphI GCATGC 1 cut(s) 307
Sse9I AATT 9 cut(s) 112, 173, 320, 397, 533, 657, 738, 896, 1111
SspMI CTAG 3 cut(s) 30, 723, 930
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 2 cut(s) 470, 921
TaqI TCGA 1 cut(s) 709
TasI AATT 9 cut(s) 112, 173, 320, 397, 533, 657, 738, 896, 1111
TatI WGTACW 1 cut(s) 815
Tru1I TTAA 2 cut(s) 545, 899
Tru9I TTAA 2 cut(s) 545, 899
TscAI CASTG 3 cut(s) 40, 135, 255
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 5 cut(s) 610, 653, 671, 1001, 1086
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 5 cut(s) 125, 390, 401, 612, 909
TspRI CASTG 3 cut(s) 40, 135, 255
VpaK11BI GGWCC 1 cut(s) 1028
XapI RAATTY 3 cut(s) 112, 397, 738
XceI RCATGY 1 cut(s) 307
XmnI GAANNNNTTC 2 cut(s) 49, 324
XspI CTAG 3 cut(s) 30, 723, 930
ZrmI AGTACT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.