Rh1DG130000

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001323
Physical Location & Seq
Reverse (-)
27080186 .. 27080648
463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG130000.1

Sequence Viewer

Length: 387 bp
ATGAATTCAATTGTTGATGCTGTGATATTTGACTTTACCCAATTCATTTTGAACATTCAACTTTTGGTTTTTCATGTGTTGAGGGTTGCTAGTTATGAAAGTGATACTGAAATGTCTGAGATGCCTTGGGCCTTGGCGAGATCATTAACTAAAAATTCCAAAGTGGATTTGAGACGGAATGTCAATCCTCATTACAGAGTTGATGAACTGAATGAACCACCTCCTCGCATTCCTGGCATCCGTTCATTGCTTCCCTTAACTGGGGGTGATTTGTTAACTGGGGAAACCGACTTGAAGATACGTCGATGGGATCATTACAGCCCTGATCGAAGTTACTGTATTTGTGGGCCAAACTTGAAGGGTGCTGGAAATGATGATTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

128

Amino Acids

14.6

Weight (kDa)

5.53

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 318
AcsI RAATTY 2 cut(s) 4, 154
AfiI CCNNNNNNNGG 2 cut(s) 260, 261
AgsI TTSAA 5 cut(s) 9, 52, 59, 295, 358
AhdI GACNNNNNGTC 1 cut(s) 179
AjnI CCWGG 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 318
AoxI GGCC 2 cut(s) 129, 347
ApoI RAATTY 2 cut(s) 4, 154
AspS9I GGNCC 2 cut(s) 129, 347
AsuHPI GGTGA 1 cut(s) 278
BccI CCATC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 234
BmeRI GACNNNNNGTC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 129, 347
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 2 cut(s) 270, 288
BmsI GCATC 3 cut(s) 7, 111, 246
BmuI ACTGGG 2 cut(s) 270, 288
BsaJI CCNNGG 2 cut(s) 125, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 261
Bse1I ACTGG 2 cut(s) 265, 283
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 125, 132
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 260, 261
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 265, 283
BseRI GAGGAG 1 cut(s) 213
BshFI GGCC 2 cut(s) 131, 349
BslI CCNNNNNNNGG 2 cut(s) 260, 261
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 2 cut(s) 131, 349
Bsp143I GATC 3 cut(s) 140, 310, 325
BspANI GGCC 2 cut(s) 131, 349
BspCNI CTCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 2 cut(s) 265, 283
BssECI CCNNGG 2 cut(s) 125, 132
BssMI GATC 3 cut(s) 140, 310, 325
BssT1I CCWWGG 2 cut(s) 125, 132
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 3 cut(s) 143, 313, 328
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 3 cut(s) 140, 310, 325
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BsuRI GGCC 2 cut(s) 131, 349
BtsCI GGATG 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 129, 347
CviAII CATG 1 cut(s) 74
CviJI RGCY 3 cut(s) 131, 321, 349
CviKI_1 RGCY 3 cut(s) 131, 321, 349
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 142, 312, 327
DpnII GATC 3 cut(s) 140, 310, 325
DriI GACNNNNNGTC 1 cut(s) 179
Eam1105I GACNNNNNGTC 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 125, 132
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 125, 132
ErhI CCWWGG 2 cut(s) 125, 132
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 75, 96, 385
FatI CATG 1 cut(s) 73
FokI GGATG 1 cut(s) 224
FspBI CTAG 1 cut(s) 90
HaeIII GGCC 2 cut(s) 131, 349
Hin1II CATG 1 cut(s) 77
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HpaI GTTAAC 1 cut(s) 276
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 1 cut(s) 77
KspAI GTTAAC 1 cut(s) 276
Kzo9I GATC 3 cut(s) 140, 310, 325
LpnPI CCDG 6 cut(s) 219, 246, 246, 264, 336, 351
LweI GCATC 3 cut(s) 7, 111, 246
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 142, 312, 327
MboI GATC 3 cut(s) 140, 310, 325
MboII GAAGA 1 cut(s) 307
MfeI CAATTG 1 cut(s) 9
MluCI AATT 4 cut(s) 4, 9, 41, 154
MnlI CCTC 4 cut(s) 75, 198, 231, 234
MseI TTAA 3 cut(s) 146, 257, 275
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 3 cut(s) 140, 310, 325
NlaIII CATG 1 cut(s) 77
PctI GAATGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 2 cut(s) 129, 347
SaqAI TTAA 3 cut(s) 146, 257, 275
Sau3AI GATC 3 cut(s) 140, 310, 325
Sau96I GGNCC 2 cut(s) 129, 347
ScrFI CCNGG 1 cut(s) 234
SetI ASST 2 cut(s) 223, 304
SfaNI GCATC 3 cut(s) 7, 111, 246
Sse9I AATT 4 cut(s) 4, 9, 41, 154
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 2 cut(s) 125, 132
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 304, 328
TasI AATT 4 cut(s) 4, 9, 41, 154
Tru1I TTAA 3 cut(s) 146, 257, 275
Tru9I TTAA 3 cut(s) 146, 257, 275
TspDTI ATGAA 7 cut(s) 17, 34, 62, 111, 219, 228, 234
TspGWI ACGGA 2 cut(s) 190, 230
XapI RAATTY 2 cut(s) 4, 154
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.