RchiOBHm_Chr1g0332481

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001323
Physical Location & Seq
Reverse (-)
23775415 .. 23777355
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56138

Sequence Viewer

Length: 663 bp
ATGGTTATGTACAGCACCCAAAATTGTGGGATCCATCTTTGGGATATGAGAACGAATTCAGATTCTTGGACATTGAAAGCAACTCCGGAGGAGGGCTATGTGTCTTCCCTAGTAACAGGCCCTTATGAAAATTGGTTTGTGTCAGGATCTTCAAGGGGTGTGCTCACTCTGTGGGATATGAGGTTCCTTATTCCTGTGAATTCATGGCCGTATTCTGCTGTTTGCCCCATAGAGAAAATGTGTCTTTTCCTTCCTCCACCAAATGCTTCTGTATCTGCTGCTGTAAGGCCCCTTGTTTATGTTGCTGCAGGTTGCAATGAAGTTTCTCTTTGGAATGCAGAAAATGGCACCTGCCCCCAGGTGTTGAGGGTTGCTAGTTATGAAAGTGATACTGAAATGTCTGAGATGCCTTGGGCCTTGGCGAGATCATTAACTAAAAATTCCAAAGTGGACATGAGACGGAATGTCAATCCTCATTACAGAGTTGATGAACTGAATGAACCACCTCCTCGCATTCCTGGCATCCGTTCATTGCTTCCCTTAACTGGGGGTGATTTGTTAACTGGGGAAACCGACTTGAAGATACCCCTGATCGAAGTTACTGTATTTGATTTTATGGGGATGCTTGGTGCTTTGCTCTTATCAAGTTCATGTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

220

Amino Acids

24.38

Weight (kDa)

4.95

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 2 cut(s) 299, 359
AccB1I GGYRCC 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 85
AclWI GGATC 3 cut(s) 25, 38, 154
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 3 cut(s) 55, 199, 439
AdeI CACNNNGTG 1 cut(s) 171
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 4 cut(s) 40, 92, 545, 546
AgsI TTSAA 3 cut(s) 76, 153, 580
AhdI GACNNNNNGTC 1 cut(s) 464
AjnI CCWGG 2 cut(s) 357, 517
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 3 cut(s) 25, 38, 154
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 4 cut(s) 118, 206, 287, 414
ApeKI GCWGC 2 cut(s) 278, 305
ApoI RAATTY 3 cut(s) 55, 199, 439
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 119, 288, 414
AsuHPI GGTGA 1 cut(s) 563
BamHI GGATCC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 265, 292
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 359, 519
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 2 cut(s) 110, 375
BfmI CTRYAG 1 cut(s) 306
BfuAI ACCTGC 2 cut(s) 299, 359
BisI GCNGC 2 cut(s) 279, 306
BlsI GCNGC 2 cut(s) 280, 307
Bme1390I CCNGG 2 cut(s) 359, 519
BmeRI GACNNNNNGTC 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 119, 288, 414
BmiI GGNNCC 4 cut(s) 32, 185, 290, 349
BmrFI CCNGG 2 cut(s) 359, 519
BmrI ACTGGG 2 cut(s) 555, 573
BmsI GCATC 3 cut(s) 396, 531, 612
BmuI ACTGGG 2 cut(s) 555, 573
BpiI GAAGAC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 357, 410, 417
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 92, 545, 546
Bse1I ACTGG 2 cut(s) 550, 568
Bse3DI GCAATG 2 cut(s) 322, 530
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 2 cut(s) 359, 519
BseDI CCNNGG 3 cut(s) 357, 410, 417
BseGI GGATG 2 cut(s) 522, 627
BseLI CCNNNNNNNGG 4 cut(s) 40, 92, 545, 546
BseMI GCAATG 2 cut(s) 322, 530
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 2 cut(s) 550, 568
BseRI GAGGAG 2 cut(s) 104, 498
BseXI GCAGC 2 cut(s) 265, 292
BshFI GGCC 4 cut(s) 120, 208, 289, 416
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 4 cut(s) 40, 92, 545, 546
BsmAI GTCTC 1 cut(s) 451
BsmBI CGTCTC 1 cut(s) 451
BsmI GAATGC 2 cut(s) 340, 513
BsnI GGCC 4 cut(s) 120, 208, 289, 416
Bsp1286I GDGCHC 1 cut(s) 165
Bsp13I TCCGGA 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 9
Bsp143I GATC 4 cut(s) 30, 146, 425, 591
BspANI GGCC 4 cut(s) 120, 208, 289, 416
BspCNI CTCAG 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 85
BspLI GGNNCC 4 cut(s) 32, 185, 290, 349
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 2 cut(s) 299, 359
BspPI GGATC 3 cut(s) 25, 38, 154
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 322, 530
BsrGI TGTACA 1 cut(s) 9
BsrI ACTGG 2 cut(s) 550, 568
BssECI CCNNGG 3 cut(s) 357, 410, 417
BssMI GATC 4 cut(s) 30, 146, 425, 591
BssT1I CCWWGG 2 cut(s) 410, 417
Bst2UI CCWGG 2 cut(s) 359, 519
Bst4CI ACNGT 1 cut(s) 604
BstAUI TGTACA 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 522, 627
BstKTI GATC 4 cut(s) 33, 149, 428, 594
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 4 cut(s) 30, 146, 425, 591
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNI CCWGG 2 cut(s) 359, 519
BstSCI CCNGG 2 cut(s) 357, 517
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 265, 292
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 30, 146
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 2 cut(s) 30, 146
BsuRI GGCC 4 cut(s) 120, 208, 289, 416
BtsCI GGATG 2 cut(s) 522, 627
BveI ACCTGC 2 cut(s) 299, 359
Cfr13I GGNCC 3 cut(s) 119, 288, 414
Csp6I GTAC 1 cut(s) 10
CviAII CATG 3 cut(s) 204, 454, 651
CviJI RGCY 5 cut(s) 96, 120, 208, 289, 416
CviKI_1 RGCY 5 cut(s) 96, 120, 208, 289, 416
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 402
DpnI GATC 4 cut(s) 32, 148, 427, 593
DpnII GATC 4 cut(s) 30, 146, 425, 591
DraIII CACNNNGTG 1 cut(s) 171
DriI GACNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 206
Eam1105I GACNNNNNGTC 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 410, 417
EcoO109I RGGNCCY 2 cut(s) 119, 288
EcoRI GAATTC 2 cut(s) 55, 199
EcoRII CCWGG 2 cut(s) 357, 517
EcoT14I CCWWGG 2 cut(s) 410, 417
ErhI CCWWGG 2 cut(s) 410, 417
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 3 cut(s) 207, 457, 654
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 3 cut(s) 203, 453, 650
Fnu4HI GCNGC 2 cut(s) 279, 306
FokI GGATG 2 cut(s) 509, 634
Fsp4HI GCNGC 2 cut(s) 279, 306
FspBI CTAG 2 cut(s) 110, 375
GluI GCNGC 2 cut(s) 279, 306
HaeIII GGCC 4 cut(s) 120, 208, 289, 416
HapII CCGG 1 cut(s) 86
Hin1II CATG 3 cut(s) 207, 457, 654
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 1 cut(s) 62
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 451, 561
Hpy188I TCNGA 2 cut(s) 61, 403
Hpy188III TCNNGA 2 cut(s) 86, 144
Hpy8I GTNNAC 2 cut(s) 451, 561
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 3 cut(s) 308, 315, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 3 cut(s) 207, 457, 654
Kpn2I TCCGGA 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 30, 146, 425, 591
Lsp1109I GCAGC 2 cut(s) 265, 292
LweI GCATC 3 cut(s) 396, 531, 612
MaeI CTAG 2 cut(s) 110, 375
MaeIII GTNAC 2 cut(s) 112, 598
MalI GATC 4 cut(s) 32, 148, 427, 593
MboI GATC 4 cut(s) 30, 146, 425, 591
MboII GAAGA 3 cut(s) 96, 141, 592
MflI RGATCY 2 cut(s) 30, 146
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 22, 55, 130, 199, 439
MnlI CCTC 8 cut(s) 82, 85, 174, 264, 360, 483, 516, 519
MroI TCCGGA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 3 cut(s) 431, 542, 560
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 359, 519
Mva1269I GAATGC 2 cut(s) 340, 513
MvaI CCWGG 2 cut(s) 359, 519
MwoI GCNNNNNNNGC 1 cut(s) 519
NdeII GATC 4 cut(s) 30, 146, 425, 591
NlaIII CATG 3 cut(s) 207, 457, 654
NlaIV GGNNCC 4 cut(s) 32, 185, 290, 349
PaqCI CACCTGC 1 cut(s) 359
PctI GAATGC 2 cut(s) 340, 513
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 280, 307
Psp6I CCWGG 2 cut(s) 357, 517
PspGI CCWGG 2 cut(s) 357, 517
PspN4I GGNNCC 4 cut(s) 32, 185, 290, 349
PspPI GGNCC 3 cut(s) 119, 288, 414
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 2 cut(s) 30, 146
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 431, 542, 560
SatI GCNGC 2 cut(s) 279, 306
Sau3AI GATC 4 cut(s) 30, 146, 425, 591
Sau96I GGNCC 3 cut(s) 119, 288, 414
ScrFI CCNGG 2 cut(s) 359, 519
SduI GDGCHC 1 cut(s) 165
SetI ASST 5 cut(s) 185, 313, 353, 363, 508
SfaNI GCATC 3 cut(s) 396, 531, 612
SfcI CTRYAG 1 cut(s) 306
Sse9I AATT 5 cut(s) 22, 55, 130, 199, 439
SspMI CTAG 2 cut(s) 110, 375
StyD4I CCNGG 2 cut(s) 357, 517
StyI CCWWGG 2 cut(s) 410, 417
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 1 cut(s) 594
TasI AATT 5 cut(s) 22, 55, 130, 199, 439
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 431, 542, 560
Tru9I TTAA 3 cut(s) 431, 542, 560
TseI GCWGC 2 cut(s) 278, 305
TspDTI ATGAA 8 cut(s) 141, 192, 333, 396, 504, 513, 519, 639
TspGWI ACGGA 2 cut(s) 475, 515
XapI RAATTY 3 cut(s) 55, 199, 439
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 2 cut(s) 110, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.