Rmu_sc0024051.1_g000001

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024051.1
OG0001323
Physical Location & Seq
Forward (+)
5156 .. 7748
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024051.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
atgagaacgaattcagattcttggacattgaaagcaactccggaggagggctatgtgtcttccctagtaacaggcccttgtgaaaattggtttgtgtcaggatcttcaaggggcgtggtcactctgtgggatatgaggttccttattcctgtgaattcatggcagtattctgctgtttgccccatagagaaaatgtgtcttttccttcctccaccaaatgcttctgtgtctgctgctgttgtttatgttgctgcaggttgcaatgaagtttctctttggaatgcagaaaatggcacctgccaccaggtgttgagggttgctagttatgaaagtgatactgaaatgtctgagatgccttgggccttggcaagatcatcaactaaaaattccaaagtggatatgagacggaatgtcaatcctcattacagagttgatgaactgaatgaaccacctcctcgcattcctggcatccgttcattgcttcccttaactgggggtgatttgttaactggggaaaccgacttgaagatacatcgatgggatcattacaggagacagagacggcctctaacaacaaagttgacagccaaggcagttcttgcagctgctgccactgatactactggctgccatcgtgtttcaatcctttcattggcctctgttaagttgaatcaaggactcttaatatcaagcagtagagatggggcaatcaaggtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

239

Amino Acids

26.37

Weight (kDa)

8.76

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 2 cut(s) 245, 305
AccB1I GGYRCC 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 40
AclWI GGATC 2 cut(s) 109, 549
AcsI RAATTY 3 cut(s) 10, 154, 385
AdeI CACNNNGTG 2 cut(s) 126, 307
AfiI CCNNNNNNNGG 4 cut(s) 47, 491, 492, 652
AgsI TTSAA 5 cut(s) 31, 108, 526, 642, 670
AhdI GACNNNNNGTC 1 cut(s) 410
AjnI CCWGG 2 cut(s) 303, 463
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 605
AluI AGCT 1 cut(s) 605
Alw26I GTCTC 3 cut(s) 397, 547, 553
AlwI GGATC 2 cut(s) 109, 549
AlwNI CAGNNNCTG 1 cut(s) 608
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 4 cut(s) 73, 360, 563, 654
ApeKI GCWGC 6 cut(s) 233, 251, 602, 605, 608, 627
ApoI RAATTY 3 cut(s) 10, 154, 385
Asp700I GAANNNNTTC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 74, 360
AsuHPI GGTGA 1 cut(s) 509
BanI GGYRCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 6 cut(s) 220, 238, 592, 595, 614, 614
BccI CCATC 3 cut(s) 531, 639, 695
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 2 cut(s) 305, 465
BcoDI GTCTC 3 cut(s) 397, 547, 553
BfaI CTAG 3 cut(s) 65, 321, 718
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 2 cut(s) 245, 305
BisI GCNGC 6 cut(s) 234, 252, 603, 606, 609, 628
BlsI GCNGC 6 cut(s) 235, 253, 604, 607, 610, 629
Bme1390I CCNGG 2 cut(s) 305, 465
BmeRI GACNNNNNGTC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 74, 360
BmiI GGNNCC 2 cut(s) 140, 295
BmrFI CCNGG 2 cut(s) 305, 465
BmrI ACTGGG 2 cut(s) 501, 519
BmsI GCATC 2 cut(s) 342, 477
BmuI ACTGGG 2 cut(s) 501, 519
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 550, 582
Bsa29I ATCGAT 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 356, 363, 588
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 491, 492, 652
Bse1I ACTGG 3 cut(s) 496, 514, 628
Bse3DI GCAATG 2 cut(s) 268, 476
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 2 cut(s) 305, 465
BseCI ATCGAT 1 cut(s) 535
BseDI CCNNGG 3 cut(s) 356, 363, 588
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 4 cut(s) 47, 491, 492, 652
BseMI GCAATG 2 cut(s) 268, 476
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 496, 514, 628
BseRI GAGGAG 2 cut(s) 59, 444
BseXI GCAGC 6 cut(s) 220, 238, 592, 595, 614, 614
BshFI GGCC 4 cut(s) 75, 362, 565, 656
BshNI GGYRCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 535
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 4 cut(s) 47, 491, 492, 652
BsmAI GTCTC 3 cut(s) 397, 547, 553
BsmBI CGTCTC 2 cut(s) 397, 553
BsmI GAATGC 2 cut(s) 286, 459
BsnI GGCC 4 cut(s) 75, 362, 565, 656
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 3 cut(s) 101, 371, 541
BspANI GGCC 4 cut(s) 75, 362, 565, 656
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 535
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 140, 295
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 2 cut(s) 245, 305
BspPI GGATC 2 cut(s) 109, 549
BspT107I GGYRCC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 268, 476
BsrI ACTGG 3 cut(s) 496, 514, 628
BssECI CCNNGG 3 cut(s) 356, 363, 588
BssMI GATC 3 cut(s) 101, 371, 541
BssT1I CCWWGG 3 cut(s) 356, 363, 588
Bst2UI CCWGG 2 cut(s) 305, 465
BstAPI GCANNNNNTGC 2 cut(s) 599, 608
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 468
BstKTI GATC 3 cut(s) 104, 374, 544
BstMAI GTCTC 3 cut(s) 397, 547, 553
BstMBI GATC 3 cut(s) 101, 371, 541
BstMWI GCNNNNNNNGC 3 cut(s) 465, 599, 608
BstNI CCWGG 2 cut(s) 305, 465
BstSCI CCNGG 2 cut(s) 303, 463
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 6 cut(s) 220, 238, 592, 595, 614, 614
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 535
BsuRI GGCC 4 cut(s) 75, 362, 565, 656
BsuTUI ATCGAT 1 cut(s) 535
BtsCI GGATG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 2 cut(s) 245, 305
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 2 cut(s) 74, 360
ClaI ATCGAT 1 cut(s) 535
CsiI ACCWGGT 1 cut(s) 303
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 1 cut(s) 159
CviJI RGCY 8 cut(s) 51, 75, 362, 565, 587, 605, 627, 656
CviKI_1 RGCY 8 cut(s) 51, 75, 362, 565, 587, 605, 627, 656
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 103, 373, 543
DpnII GATC 3 cut(s) 101, 371, 541
DraIII CACNNNGTG 2 cut(s) 126, 307
DriI GACNNNNNGTC 1 cut(s) 410
Eam1105I GACNNNNNGTC 1 cut(s) 410
Eco130I CCWWGG 3 cut(s) 356, 363, 588
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 2 cut(s) 10, 154
EcoRII CCWGG 2 cut(s) 303, 463
EcoT14I CCWWGG 3 cut(s) 356, 363, 588
ErhI CCWWGG 3 cut(s) 356, 363, 588
Esp3I CGTCTC 2 cut(s) 397, 553
FaeI CATG 1 cut(s) 162
FaiI YATR 7 cut(s) 54, 134, 160, 185, 246, 327, 401
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 6 cut(s) 234, 252, 603, 606, 609, 628
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 6 cut(s) 234, 252, 603, 606, 609, 628
FspBI CTAG 3 cut(s) 65, 321, 718
GluI GCNGC 6 cut(s) 234, 252, 603, 606, 609, 628
HaeIII GGCC 4 cut(s) 75, 362, 565, 656
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 162
HincII GTYRAC 2 cut(s) 507, 582
HindII GTYRAC 2 cut(s) 507, 582
HinfI GANTC 3 cut(s) 17, 670, 678
HpaI GTTAAC 1 cut(s) 507
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 507, 582
Hpy188I TCNGA 2 cut(s) 16, 349
Hpy188III TCNNGA 2 cut(s) 41, 99
Hpy8I GTNNAC 2 cut(s) 507, 582
HpyAV CCTTC 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 254, 261, 284, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 465, 599, 608
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 507
Kzo9I GATC 3 cut(s) 101, 371, 541
Lsp1109I GCAGC 6 cut(s) 220, 238, 592, 595, 614, 614
LweI GCATC 2 cut(s) 342, 477
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 3 cut(s) 65, 321, 718
MaeIII GTNAC 2 cut(s) 67, 118
MalI GATC 3 cut(s) 103, 373, 543
MboI GATC 3 cut(s) 101, 371, 541
MboII GAAGA 3 cut(s) 51, 96, 538
MflI RGATCY 1 cut(s) 101
MluCI AATT 4 cut(s) 10, 85, 154, 385
MlyI GAGTC 1 cut(s) 672
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 4 cut(s) 488, 506, 663, 683
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 305, 465
Mva1269I GAATGC 2 cut(s) 286, 459
MvaI CCWGG 2 cut(s) 305, 465
MwoI GCNNNNNNNGC 3 cut(s) 465, 599, 608
NdeII GATC 3 cut(s) 101, 371, 541
NlaIII CATG 1 cut(s) 162
NlaIV GGNNCC 2 cut(s) 140, 295
NmuCI GTSAC 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 305
PctI GAATGC 2 cut(s) 286, 459
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 17, 670
PkrI GCNGC 6 cut(s) 235, 253, 604, 607, 610, 629
PleI GAGTC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 672
Psp6I CCWGG 2 cut(s) 303, 463
PspGI CCWGG 2 cut(s) 303, 463
PspN4I GGNNCC 2 cut(s) 140, 295
PspPI GGNCC 2 cut(s) 74, 360
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 605
SaqAI TTAA 4 cut(s) 488, 506, 663, 683
SatI GCNGC 6 cut(s) 234, 252, 603, 606, 609, 628
Sau3AI GATC 3 cut(s) 101, 371, 541
Sau96I GGNCC 2 cut(s) 74, 360
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 2 cut(s) 305, 465
SetI ASST 7 cut(s) 140, 259, 299, 309, 454, 607, 717
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 2 cut(s) 342, 477
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 4 cut(s) 10, 85, 154, 385
SspMI CTAG 3 cut(s) 65, 321, 718
StyD4I CCNGG 2 cut(s) 303, 463
StyI CCWWGG 3 cut(s) 356, 363, 588
TaqI TCGA 1 cut(s) 535
TasI AATT 4 cut(s) 10, 85, 154, 385
TfiI GAWTC 2 cut(s) 17, 670
Tru1I TTAA 4 cut(s) 488, 506, 663, 683
Tru9I TTAA 4 cut(s) 488, 506, 663, 683
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 6 cut(s) 233, 251, 602, 605, 608, 627
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 7 cut(s) 147, 279, 342, 450, 459, 465, 639
TspGWI ACGGA 2 cut(s) 421, 461
TspRI CASTG 1 cut(s) 619
XapI RAATTY 3 cut(s) 10, 154, 385
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 3 cut(s) 65, 321, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.