Rh1AG125800

Phosphoinositide 3-kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001323
Physical Location & Seq
Reverse (-)
23367076 .. 23368584
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG125800.1

Sequence Viewer

Length: 1068 bp
ATGATGAGCAATAGGTCAACTCAGGACACTAGCACTGGACATGGAACTCCTTCAAACATCCATGCTGTTAGAGGTAAATCTTCTCATGACATGATTGCAATGCAGAACATGAATTTGACAAAGGGCTCACTGGGAAAGAAACTAGAGATGGATAAAGGTTTCAAACGCGATCAATTTAAACTTCTCGGTGATATCAATACCCTTCTTAGGGATGTTAAACAAAGTAATCATTATTCTAATACGAAGCCAGTGGTGGAGGACAACACCAAGTCTGCATTTTCCCAAAATCTTGGAAACTATGGCATGCAATCTCCTGGTGAATTACTTCAGACTATCTCCAATGCGTTTAGGAGAAATGATCATCCTTTTCTAAAAAAGATTACAATGAATGATTTGAATTCATTGATATCCAAGTATGACAGCCAGTCAGATACCTTTGAGGAAAGTGTGAGGATATGTTATGCCAGTACTATAGCTAAGCTGGCACTAACTGCTTATGGTTTCTTAGTTCACTCAATAACCTTGAGTGAGGCTGGTGTGCTTGATGAATTAAGTTCTCCAAAGAAGCTACTATCATCATCTAGTGAGACATCTGGTCAGCTCCACAAGGTAAATAATGATGCACAGCTTGCCCAGTTGAGGAAGTCCATAGCTGCAGTCATTCAAGAGCTTGTTATGCGTCCCAAGAAAACTCCCAATATCAGGAGAGCACTCCTTCAGGATATCAGCAATCTATGCTGCTTCTTTGGCCAGAGGCAGAGTCAAAGAAGTGTGGAAGAATATCTTTTACCTTATATTGAGCAGGCTGTAAGTGATGCTACAGAGGCTGCTATTGTCAATGCATTGGACTGTTTGGCCATTTTGTGCAAAAGTAGTTACTTGCGCAAGAGGATACTCCTGGAAATGATTGAGCGTGCATTTCCATTGTTATGCTATCCTAGTCAATGGGTAAGAAGGTCGGCTGTCAGTTTTATTGCAGCCAGCAGTGATTGCTTGGGTGCAGTAGATTCCTATGTATTCCTTGCTCCTGTTATTCGTCCCCTTCTTGTAGACAGCCAGCATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000011 GO:0000151 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005768 GO:0005770 GO:0005942 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006605 GO:0006623 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010008 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0019898 GO:0022414 GO:0023052 GO:0030242 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031461 GO:0031967 GO:0031975 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032507 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034243 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0035556 GO:0036211 GO:0042886 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045053 GO:0045184 GO:0045185 GO:0045324 GO:0045893 GO:0045935 GO:0045944 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048308 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051235 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0060255 GO:0061695 GO:0061919 GO:0065007 GO:0065008 GO:0070727 GO:0071561 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120095 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04371 map04136 map04138 map04140 map04371
Pfam Domains
Protein Families
HEAT Pkinase WD40

Protein Analysis

355

Amino Acids

39.5

Weight (kDa)

8.96

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS15-like_hel PF22956 143 - 254 1.5e-18 VPS15-like, helical domain
VPS15-like_hel PF22956 255 - 350 2e-28 VPS15-like, helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 884
AccI GTMKAC 1 cut(s) 1050
AccII CGCG 1 cut(s) 168
AcoI YGGCCR 2 cut(s) 748, 855
AcsI RAATTY 2 cut(s) 112, 397
AcuI CTGAAG 2 cut(s) 311, 701
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 207, 208, 639, 702
AgsI TTSAA 4 cut(s) 54, 163, 397, 665
AhdI GACNNNNNGTC 2 cut(s) 424, 594
AjnI CCWGG 2 cut(s) 313, 897
AluBI AGCT 7 cut(s) 476, 481, 568, 601, 628, 653, 670
AluI AGCT 7 cut(s) 476, 481, 568, 601, 628, 653, 670
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 2 cut(s) 748, 855
ApeKI GCWGC 4 cut(s) 653, 738, 827, 977
ApoI RAATTY 2 cut(s) 112, 397
Asp700I GAANNNNTTC 2 cut(s) 49, 324
AspLEI GCGC 1 cut(s) 885
AsuHPI GGTGA 2 cut(s) 200, 329
BalI TGGCCA 2 cut(s) 750, 857
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 4 cut(s) 640, 725, 814, 989
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 2 cut(s) 315, 899
BciVI GTATCC 1 cut(s) 885
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 5 cut(s) 30, 143, 582, 939, 1066
BfmI CTRYAG 3 cut(s) 471, 654, 819
BfuI GTATCC 1 cut(s) 885
BisI GCNGC 4 cut(s) 654, 739, 828, 978
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 4 cut(s) 655, 740, 829, 979
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 315, 899
BmeRI GACNNNNNGTC 2 cut(s) 424, 594
BmrFI CCNGG 2 cut(s) 315, 899
BmrI ACTGGG 2 cut(s) 140, 628
BmsI GCATC 2 cut(s) 610, 805
BmuI ACTGGG 2 cut(s) 140, 628
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 544
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 208, 639, 702
Bse1I ACTGG 6 cut(s) 40, 135, 248, 424, 465, 634
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 315, 899
BseGI GGATG 3 cut(s) 57, 217, 361
BseLI CCNNNNNNNGG 4 cut(s) 207, 208, 639, 702
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 6 cut(s) 40, 135, 248, 424, 465, 634
BseXI GCAGC 4 cut(s) 640, 725, 814, 989
BsgI GTGCAG 1 cut(s) 1020
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 750, 857
BsiHKAI GWGCWC 1 cut(s) 712
BslFI GGGAC 2 cut(s) 666, 1023
BslI CCNNNNNNNGG 4 cut(s) 207, 208, 639, 702
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 2 cut(s) 666, 1023
BsnI GGCC 2 cut(s) 750, 857
Bsp1286I GDGCHC 2 cut(s) 128, 712
Bsp143I GATC 2 cut(s) 169, 358
Bsp1720I GCTNAGC 1 cut(s) 477
BspANI GGCC 2 cut(s) 750, 857
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 6 cut(s) 40, 135, 248, 424, 465, 634
BssMI GATC 2 cut(s) 169, 358
Bst2UI CCWGG 2 cut(s) 315, 899
Bst4CI ACNGT 1 cut(s) 851
BstAPI GCANNNNNTGC 4 cut(s) 491, 629, 735, 990
BstC8I GCNNGC 7 cut(s) 305, 483, 630, 804, 915, 982, 1058
BstDEI CTNAG 4 cut(s) 21, 206, 477, 505
BstF5I GGATG 3 cut(s) 57, 217, 361
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 885
BstKTI GATC 2 cut(s) 172, 361
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 2 cut(s) 169, 358
BstMWI GCNNNNNNNGC 8 cut(s) 482, 491, 629, 676, 735, 747, 824, 990
BstNI CCWGG 2 cut(s) 315, 899
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 313, 897
BstSFI CTRYAG 3 cut(s) 471, 654, 819
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 640, 725, 814, 989
BstXI CCANNNNNNTGG 1 cut(s) 290
BsuI GTATCC 1 cut(s) 885
BsuRI GGCC 2 cut(s) 750, 857
BtsCI GGATG 3 cut(s) 57, 217, 361
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 4 cut(s) 33, 128, 255, 991
Cac8I GCNNGC 7 cut(s) 305, 483, 630, 804, 915, 982, 1058
CaiI CAGNNNCTG 1 cut(s) 827
CciI TCATGA 1 cut(s) 85
CfoI GCGC 1 cut(s) 885
CseI GACGC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 468
CviAII CATG 6 cut(s) 41, 62, 86, 91, 109, 304
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 4 cut(s) 21, 206, 477, 505
DpnI GATC 2 cut(s) 171, 360
DpnII GATC 2 cut(s) 169, 358
DraI TTTAAA 1 cut(s) 178
DriI GACNNNNNGTC 2 cut(s) 424, 594
EaeI YGGCCR 2 cut(s) 748, 855
Eam1105I GACNNNNNGTC 2 cut(s) 424, 594
Eco24I GRGCYC 1 cut(s) 128
Eco32I GATATC 3 cut(s) 193, 408, 724
Eco57I CTGAAG 2 cut(s) 311, 701
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 313, 897
EcoRV GATATC 3 cut(s) 193, 408, 724
EcoT22I ATGCAT 1 cut(s) 844
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 6 cut(s) 44, 65, 89, 94, 112, 307
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FaqI GGGAC 2 cut(s) 666, 1023
FatI CATG 6 cut(s) 40, 61, 85, 90, 108, 303
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 4 cut(s) 654, 739, 828, 978
FokI GGATG 3 cut(s) 44, 224, 348
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 654, 739, 828, 978
FspBI CTAG 5 cut(s) 30, 143, 582, 939, 1066
FspI TGCGCA 1 cut(s) 884
GlaI GCGC 1 cut(s) 884
GluI GCNGC 4 cut(s) 654, 739, 828, 978
HaeIII GGCC 2 cut(s) 750, 857
HgaI GACGC 1 cut(s) 668
HhaI GCGC 1 cut(s) 885
Hin1II CATG 6 cut(s) 44, 65, 89, 94, 112, 307
Hin6I GCGC 1 cut(s) 883
HinP1I GCGC 1 cut(s) 883
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 760, 1007
HphI GGTGA 2 cut(s) 200, 329
Hpy166II GTNNAC 3 cut(s) 18, 511, 1051
Hpy188I TCNGA 2 cut(s) 330, 430
Hpy188III TCNNGA 5 cut(s) 23, 86, 665, 703, 719
Hpy8I GTNNAC 3 cut(s) 18, 511, 1051
HpyAV CCTTC 5 cut(s) 60, 212, 725, 948, 1052
HpyCH4III ACNGT 1 cut(s) 851
HpyF10VI GCNNNNNNNGC 8 cut(s) 482, 491, 629, 676, 735, 747, 824, 990
HpyF3I CTNAG 4 cut(s) 21, 206, 477, 505
Hsp92II CATG 6 cut(s) 44, 65, 89, 94, 112, 307
HspAI GCGC 1 cut(s) 883
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 169, 358
LmnI GCTCC 2 cut(s) 606, 1030
Lsp1109I GCAGC 4 cut(s) 640, 725, 814, 989
LweI GCATC 2 cut(s) 610, 805
MaeI CTAG 5 cut(s) 30, 143, 582, 939, 1066
MaeIII GTNAC 1 cut(s) 875
MalI GATC 2 cut(s) 171, 360
MboI GATC 2 cut(s) 169, 358
MboII GAAGA 2 cut(s) 72, 788
MhlI GDGCHC 2 cut(s) 128, 712
MlsI TGGCCA 2 cut(s) 750, 857
MluCI AATT 5 cut(s) 112, 173, 320, 397, 548
MluNI TGGCCA 2 cut(s) 750, 857
MlyI GAGTC 1 cut(s) 769
MnlI CCTC 9 cut(s) 65, 250, 433, 444, 523, 633, 747, 817, 882
Mox20I TGGCCA 2 cut(s) 750, 857
Mph1103I ATGCAT 1 cut(s) 844
MroXI GAANNNNTTC 2 cut(s) 49, 324
MscI TGGCCA 2 cut(s) 750, 857
MseI TTAA 3 cut(s) 177, 216, 551
MslI CAYNNNNRTG 1 cut(s) 928
Msp20I TGGCCA 2 cut(s) 750, 857
MspR9I CCNGG 2 cut(s) 315, 899
MvaI CCWGG 2 cut(s) 315, 899
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 8 cut(s) 482, 491, 629, 676, 735, 747, 824, 990
NdeII GATC 2 cut(s) 169, 358
NlaIII CATG 6 cut(s) 44, 65, 89, 94, 112, 307
NsbI TGCGCA 1 cut(s) 884
NsiI ATGCAT 1 cut(s) 844
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PagI TCATGA 1 cut(s) 85
PdmI GAANNNNTTC 2 cut(s) 49, 324
PfeI GAWTC 1 cut(s) 1007
PfoI TCCNGGA 1 cut(s) 897
PkrI GCNGC 4 cut(s) 655, 740, 829, 979
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 313, 897
PspGI CCWGG 2 cut(s) 313, 897
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 827
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 928
SaqAI TTAA 3 cut(s) 177, 216, 551
SatI GCNGC 4 cut(s) 654, 739, 828, 978
Sau3AI GATC 2 cut(s) 169, 358
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 2 cut(s) 315, 899
SduI GDGCHC 2 cut(s) 128, 712
SfaNI GCATC 2 cut(s) 610, 805
SfcI CTRYAG 3 cut(s) 471, 654, 819
SmiMI CAYNNNNRTG 1 cut(s) 928
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
SphI GCATGC 1 cut(s) 307
Sse9I AATT 5 cut(s) 112, 173, 320, 397, 548
SspMI CTAG 5 cut(s) 30, 143, 582, 939, 1066
StyD4I CCNGG 2 cut(s) 313, 897
TaaI ACNGT 1 cut(s) 851
TasI AATT 5 cut(s) 112, 173, 320, 397, 548
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 3 cut(s) 177, 216, 551
Tru9I TTAA 3 cut(s) 177, 216, 551
TscAI CASTG 4 cut(s) 40, 135, 255, 991
TseI GCWGC 4 cut(s) 653, 738, 827, 977
TspDTI ATGAA 4 cut(s) 125, 390, 401, 561
TspRI CASTG 4 cut(s) 40, 135, 255, 991
XapI RAATTY 2 cut(s) 112, 397
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 1050
XmnI GAANNNNTTC 2 cut(s) 49, 324
XspI CTAG 5 cut(s) 30, 143, 582, 939, 1066
ZrmI AGTACT 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.